RNA–Protein interactions for RNA: ENST00000383999.1

RNU6-259P-201, Transcript of RNA, U6 small nuclear 259, pseudogene, humanhuman

BASIC

Gene RNU6-259P, Length 107 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-259P-201ENST00000383999 AEBP2Q6ZN18 517 aaPredicted RBP23.34■■□□□ 1.33
RNU6-259P-201ENST00000383999 CHIC1Q5VXU3 224 aa22.5■■□□□ 1.19
RNU6-259P-201ENST00000383999 SENP3Q9H4L4 574 aaPredicted RBP19.84■□□□□ 0.77
RNU6-259P-201ENST00000383999 PHF23Q9BUL5 403 aaPredicted RBP19.77■□□□□ 0.76
RNU6-259P-201ENST00000383999 POTEDQ86YR6 584 aa18.53■□□□□ 0.56
RNU6-259P-201ENST00000383999 FOXD1Q16676 465 aa18.52■□□□□ 0.56
RNU6-259P-201ENST00000383999 PLPPR3Q6T4P5 718 aa18.13■□□□□ 0.49
RNU6-259P-201ENST00000383999 MSH5O43196 834 aa17.6■□□□□ 0.41
RNU6-259P-201ENST00000383999 PPP6R1Q9UPN7 881 aa17.55■□□□□ 0.4
RNU6-259P-201ENST00000383999 ADRA2BP18089 450 aa17.51■□□□□ 0.39
RNU6-259P-201ENST00000383999 PIAS4Q8N2W9 510 aaPredicted RBP17.32■□□□□ 0.36
RNU6-259P-201ENST00000383999 SCAF1Q9H7N4 1312 aaKnown RBP16■□□□□ 0.15
RNU6-259P-201ENST00000383999 MAPK8IP2Q13387 824 aaPredicted RBP15.99■□□□□ 0.15
RNU6-259P-201ENST00000383999 PPP4R3CPQ6ZMV5 832 aa15.95■□□□□ 0.14
RNU6-259P-201ENST00000383999 DMRT2Q9Y5R5 561 aa15.79■□□□□ 0.12
RNU6-259P-201ENST00000383999 CACNB1Q02641 598 aaPredicted RBP15.59■□□□□ 0.09
RNU6-259P-201ENST00000383999 CNKSR2Q8WXI2 1034 aa15.56■□□□□ 0.08
RNU6-259P-201ENST00000383999 NCBP3Q53F19 620 aaKnown RBP15.44■□□□□ 0.06
RNU6-259P-201ENST00000383999 HOXD11P31277 338 aaPredicted RBP15.35■□□□□ 0.05
RNU6-259P-201ENST00000383999 RNF216Q9NWF9 866 aaPredicted RBP15.32■□□□□ 0.04
RNU6-259P-201ENST00000383999 KCNA4P22459 653 aa15.24■□□□□ 0.03
RNU6-259P-201ENST00000383999 NPM3O75607 178 aaKnown RBP15.22■□□□□ 0.03
RNU6-259P-201ENST00000383999 DCAF8L1A6NGE4 600 aa15.13■□□□□ 0.01
RNU6-259P-201ENST00000383999 RNF39Q9H2S5 420 aa14.96□□□□□ -0.01
RNU6-259P-201ENST00000383999 DNAJC5BQ9UF47 199 aa14.81□□□□□ -0.04
RNU6-259P-201ENST00000383999 C1QBPQ07021 282 aaKnown RBP14.69□□□□□ -0.06
RNU6-259P-201ENST00000383999 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.64□□□□□ -0.07
RNU6-259P-201ENST00000383999 SLC4A1APQ9BWU0 796 aaKnown RBP14.46□□□□□ -0.09
RNU6-259P-201ENST00000383999 SLC4A2P04920 1241 aa14.45□□□□□ -0.1
RNU6-259P-201ENST00000383999 POTEHQ6S545 545 aa14.36□□□□□ -0.11
RNU6-259P-201ENST00000383999 U3KPZ7 1027 aaPredicted RBP14.36□□□□□ -0.11
RNU6-259P-201ENST00000383999 FOXD4L1Q9NU39 408 aa14.11□□□□□ -0.15
RNU6-259P-201ENST00000383999 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.06□□□□□ -0.16
RNU6-259P-201ENST00000383999 HNRNPUL2Q1KMD3 747 aaKnown RBP14.06□□□□□ -0.16
RNU6-259P-201ENST00000383999 MYCNP04198 464 aaPredicted RBP14.05□□□□□ -0.16
RNU6-259P-201ENST00000383999 SPINK5Q9NQ38 1064 aaPredicted RBP14.05□□□□□ -0.16
RNU6-259P-201ENST00000383999 ZBTB22O15209 634 aa14.02□□□□□ -0.17
RNU6-259P-201ENST00000383999 CAPN15O75808 1086 aa14.01□□□□□ -0.17
RNU6-259P-201ENST00000383999 SAMD1Q6SPF0 538 aaPredicted RBP14.01□□□□□ -0.17
RNU6-259P-201ENST00000383999 APLP2Q06481 763 aa13.98□□□□□ -0.17
RNU6-259P-201ENST00000383999 TRHP20396 242 aaPredicted RBP13.88□□□□□ -0.19
RNU6-259P-201ENST00000383999 DSG3P32926 999 aa13.84□□□□□ -0.19
RNU6-259P-201ENST00000383999 ZNF219Q9P2Y4 722 aaPredicted RBP13.84□□□□□ -0.19
RNU6-259P-201ENST00000383999 ABCB7O75027 752 aa13.72□□□□□ -0.21
RNU6-259P-201ENST00000383999 ATF5Q9Y2D1 282 aaPredicted RBP13.72□□□□□ -0.21
RNU6-259P-201ENST00000383999 CSRNP3Q8WYN3 585 aa13.7□□□□□ -0.22
RNU6-259P-201ENST00000383999 EHMT2Q96KQ7 1210 aa13.7□□□□□ -0.22
RNU6-259P-201ENST00000383999 ATXN8OSP0DMR3 200 aa13.64□□□□□ -0.23
RNU6-259P-201ENST00000383999 POLA2Q14181 598 aa13.58□□□□□ -0.24
RNU6-259P-201ENST00000383999 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
RNU6-259P-201ENST00000383999 RBM42Q9BTD8 480 aaKnown RBP13.19□□□□□ -0.3
RNU6-259P-201ENST00000383999 CHRDL2Q6WN34 429 aa13.16□□□□□ -0.3
RNU6-259P-201ENST00000383999 FBLN2P98095 1184 aa13.15□□□□□ -0.3
RNU6-259P-201ENST00000383999 OSCARQ8IYS5 282 aa13.12□□□□□ -0.31
RNU6-259P-201ENST00000383999 MKRN4PQ13434 485 aaPredicted RBP13.11□□□□□ -0.31
RNU6-259P-201ENST00000383999 SP7Q8TDD2 431 aaPredicted RBP13.09□□□□□ -0.31
RNU6-259P-201ENST00000383999 AKT1S1Q96B36 256 aa12.98□□□□□ -0.33
RNU6-259P-201ENST00000383999 SPDYE2BA6NHP3 402 aa12.94□□□□□ -0.34
RNU6-259P-201ENST00000383999 SPDYE6P0CI01 402 aa12.94□□□□□ -0.34
RNU6-259P-201ENST00000383999 SPDYE2Q495Y8 402 aa12.94□□□□□ -0.34
RNU6-259P-201ENST00000383999 REM2Q8IYK8 340 aaPredicted RBP12.86□□□□□ -0.35
RNU6-259P-201ENST00000383999 ZNF692Q9BU19 519 aaPredicted RBP12.86□□□□□ -0.35
RNU6-259P-201ENST00000383999 SSUH2Q9Y2M2 353 aa12.81□□□□□ -0.36
RNU6-259P-201ENST00000383999 PITPNM1O00562 1244 aa12.7□□□□□ -0.38
RNU6-259P-201ENST00000383999 PABPN1Q86U42 306 aaKnown RBP eCLIP12.68□□□□□ -0.38
RNU6-259P-201ENST00000383999 PIP4P2Q8N4L2 257 aa12.68□□□□□ -0.38
RNU6-259P-201ENST00000383999 SPDYE4A6NLX3 237 aa12.66□□□□□ -0.38
RNU6-259P-201ENST00000383999 HAX1O00165 279 aa12.66□□□□□ -0.38
RNU6-259P-201ENST00000383999 SPDYE1Q8NFV5 336 aaPredicted RBP12.64□□□□□ -0.39
RNU6-259P-201ENST00000383999 CLEC11AQ9Y240 323 aa12.6□□□□□ -0.39
RNU6-259P-201ENST00000383999 FXR2P51116 673 aaKnown RBP eCLIP12.53□□□□□ -0.4
RNU6-259P-201ENST00000383999 EVX2Q03828 476 aa12.48□□□□□ -0.41
RNU6-259P-201ENST00000383999 PRR29P0C7W0 189 aa12.44□□□□□ -0.42
RNU6-259P-201ENST00000383999 PROM2Q8N271 834 aa12.4□□□□□ -0.42
RNU6-259P-201ENST00000383999 STAG3Q9UJ98 1225 aa12.4□□□□□ -0.42
RNU6-259P-201ENST00000383999 PRKAR2AP13861 404 aaKnown RBP12.39□□□□□ -0.43
RNU6-259P-201ENST00000383999 FKBP8Q14318 412 aa12.39□□□□□ -0.43
RNU6-259P-201ENST00000383999 CHADLQ6NUI6 762 aa12.33□□□□□ -0.44
RNU6-259P-201ENST00000383999 LHX8Q68G74 356 aa12.27□□□□□ -0.45
RNU6-259P-201ENST00000383999 CREBZFQ9NS37 354 aa12.22□□□□□ -0.45
RNU6-259P-201ENST00000383999 FARP1Q9Y4F1 1045 aaPredicted RBP12.18□□□□□ -0.46
RNU6-259P-201ENST00000383999 PLSCR2Q9NRY7 297 aa12.14□□□□□ -0.47
RNU6-259P-201ENST00000383999 GABBR2O75899 941 aa12.13□□□□□ -0.47
RNU6-259P-201ENST00000383999 C19orf67A6NJJ6 358 aa12.12□□□□□ -0.47
RNU6-259P-201ENST00000383999 MIER1Q8N108 512 aa12.06□□□□□ -0.48
RNU6-259P-201ENST00000383999 MNX1P50219 401 aaPredicted RBP12.05□□□□□ -0.48
RNU6-259P-201ENST00000383999 FBXO3Q9UK99 471 aa12.03□□□□□ -0.48
RNU6-259P-201ENST00000383999 NPM1P06748 294 aaKnown RBP eCLIP12□□□□□ -0.49
RNU6-259P-201ENST00000383999 CD44P16070 742 aaKnown RBP12□□□□□ -0.49
RNU6-259P-201ENST00000383999 PLEKHG5O94827 1062 aa11.99□□□□□ -0.49
RNU6-259P-201ENST00000383999 PLCD3Q8N3E9 789 aa11.99□□□□□ -0.49
RNU6-259P-201ENST00000383999 ZRANB1Q9UGI0 708 aa11.9□□□□□ -0.5
RNU6-259P-201ENST00000383999 POTEIP0CG38 1075 aa11.88□□□□□ -0.51
RNU6-259P-201ENST00000383999 VASPP50552 380 aaPredicted RBP11.87□□□□□ -0.51
RNU6-259P-201ENST00000383999 PAK3O75914 559 aaPredicted RBP11.86□□□□□ -0.51
RNU6-259P-201ENST00000383999 ZBTB47Q9UFB7 747 aaPredicted RBP11.86□□□□□ -0.51
RNU6-259P-201ENST00000383999 ZNF579Q8NAF0 562 aaKnown RBP11.84□□□□□ -0.51
RNU6-259P-201ENST00000383999 TSPYL2Q9H2G4 693 aaPredicted RBP11.81□□□□□ -0.52
RNU6-259P-201ENST00000383999 RASEFQ8IZ41 740 aa11.79□□□□□ -0.52
RNU6-259P-201ENST00000383999 NUBP1P53384 320 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms