RNA–Protein interactions for RNA: ENST00000382381.7

ABCA3-202, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 1 (best) BASIC

Gene ABCA3, Length 6,446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-202ENST00000382381 DCAF8L2P0C7V8 631 aa22.84■■□□□ 1.25
ABCA3-202ENST00000382381 NISCHQ9Y2I1 1504 aa21.69■■□□□ 1.06
ABCA3-202ENST00000382381 EHMT2Q96KQ7 1210 aa21.36■■□□□ 1.01
ABCA3-202ENST00000382381 SUPT5HO00267 1087 aaKnown RBP21.32■■□□□ 1
ABCA3-202ENST00000382381 SHROOM4Q9ULL8 1493 aa21.02■□□□□ 0.96
ABCA3-202ENST00000382381 TTBK1Q5TCY1 1321 aaPredicted RBP20.58■□□□□ 0.88
ABCA3-202ENST00000382381 PELP1Q8IZL8 1130 aaKnown RBP20.37■□□□□ 0.85
ABCA3-202ENST00000382381 FAM9AQ8IZU1 332 aaPredicted RBP20.34■□□□□ 0.85
ABCA3-202ENST00000382381 APLP2Q06481 763 aa20.24■□□□□ 0.83
ABCA3-202ENST00000382381 RANGAP1P46060 587 aaPredicted RBP20.23■□□□□ 0.83
ABCA3-202ENST00000382381 PCGF6Q9BYE7 350 aa20.09■□□□□ 0.81
ABCA3-202ENST00000382381 ATP1B4Q9UN42 357 aaPredicted RBP19.91■□□□□ 0.78
ABCA3-202ENST00000382381 ERICH6Q7L0X2 663 aa19.91■□□□□ 0.78
ABCA3-202ENST00000382381 YTHDC1Q96MU7 727 aaKnown RBP19.71■□□□□ 0.75
ABCA3-202ENST00000382381 CCER1Q8TC90 406 aaPredicted RBP19.68■□□□□ 0.74
ABCA3-202ENST00000382381 PPARGC1BQ86YN6 1023 aaKnown RBP19.59■□□□□ 0.73
ABCA3-202ENST00000382381 CENPBP07199 599 aaPredicted RBP19.58■□□□□ 0.72
ABCA3-202ENST00000382381 ABCC9O60706 1549 aa19.47■□□□□ 0.71
ABCA3-202ENST00000382381 UBTFP17480 764 aaKnown RBP19.44■□□□□ 0.7
ABCA3-202ENST00000382381 TRIM41Q8WV44 630 aa19.43■□□□□ 0.7
ABCA3-202ENST00000382381 MYT1Q01538 1121 aa19.42■□□□□ 0.7
ABCA3-202ENST00000382381 CNGB1Q14028 1251 aaPredicted RBP19.36■□□□□ 0.69
ABCA3-202ENST00000382381 PABPN1Q86U42 306 aaKnown RBP eCLIP19.35■□□□□ 0.69
ABCA3-202ENST00000382381 NEFLP07196 543 aa19.35■□□□□ 0.69
ABCA3-202ENST00000382381 POLR3GLQ9BT43 218 aa19.29■□□□□ 0.68
ABCA3-202ENST00000382381 ITGAEP38570 1179 aa19.2■□□□□ 0.66
ABCA3-202ENST00000382381 CHIC1Q5VXU3 224 aa19.18■□□□□ 0.66
ABCA3-202ENST00000382381 MYT1LQ9UL68 1186 aa19.17■□□□□ 0.66
ABCA3-202ENST00000382381 ZEB1P37275 1124 aaPredicted RBP19.17■□□□□ 0.66
ABCA3-202ENST00000382381 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.04■□□□□ 0.64
ABCA3-202ENST00000382381 HNRNPUL2Q1KMD3 747 aaKnown RBP19.04■□□□□ 0.64
ABCA3-202ENST00000382381 DAXXQ9UER7 740 aaPredicted RBP18.98■□□□□ 0.63
ABCA3-202ENST00000382381 SLC4A1APQ9BWU0 796 aaKnown RBP18.91■□□□□ 0.62
ABCA3-202ENST00000382381 LOC105371045A0A1W2PR82 267 aa18.77■□□□□ 0.6
ABCA3-202ENST00000382381 HRCP23327 699 aa18.73■□□□□ 0.59
ABCA3-202ENST00000382381 TRIM26Q12899 539 aaPredicted RBP18.68■□□□□ 0.58
ABCA3-202ENST00000382381 FBLN2P98095 1184 aa18.66■□□□□ 0.58
ABCA3-202ENST00000382381 CLSPNQ9HAW4 1339 aa18.65■□□□□ 0.58
ABCA3-202ENST00000382381 BCL11AQ9H165 835 aa18.62■□□□□ 0.57
ABCA3-202ENST00000382381 BCANQ96GW7 911 aa18.54■□□□□ 0.56
ABCA3-202ENST00000382381 ZNF316A6NFI3 1004 aaPredicted RBP18.53■□□□□ 0.56
ABCA3-202ENST00000382381 RTL5Q5HYW3 569 aaPredicted RBP18.45■□□□□ 0.54
ABCA3-202ENST00000382381 NEUROD1Q13562 356 aa18.42■□□□□ 0.54
ABCA3-202ENST00000382381 FAM50AQ14320 339 aaKnown RBP18.41■□□□□ 0.54
ABCA3-202ENST00000382381 ZNF326Q5BKZ1 582 aaKnown RBP18.39■□□□□ 0.53
ABCA3-202ENST00000382381 SLC24A1O60721 1099 aa18.38■□□□□ 0.53
ABCA3-202ENST00000382381 TRIM52Q96A61 297 aa18.37■□□□□ 0.53
ABCA3-202ENST00000382381 DIEXFQ68CQ4 756 aaKnown RBP18.35■□□□□ 0.53
ABCA3-202ENST00000382381 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
ABCA3-202ENST00000382381 ARID3CA6NKF2 412 aa18.3■□□□□ 0.52
ABCA3-202ENST00000382381 P3H3Q8IVL6 736 aa18.18■□□□□ 0.5
ABCA3-202ENST00000382381 GTF3C3Q9Y5Q9 886 aa18.14■□□□□ 0.5
ABCA3-202ENST00000382381 ZBTB47Q9UFB7 747 aaPredicted RBP18.1■□□□□ 0.49
ABCA3-202ENST00000382381 PLPPR3Q6T4P5 718 aa18.07■□□□□ 0.48
ABCA3-202ENST00000382381 CANXP27824 592 aaKnown RBP18.06■□□□□ 0.48
ABCA3-202ENST00000382381 NPM2Q86SE8 214 aaKnown RBP18.01■□□□□ 0.47
ABCA3-202ENST00000382381 ANP32CO43423 234 aa18■□□□□ 0.47
ABCA3-202ENST00000382381 CDK11AQ9UQ88 783 aaPredicted RBP17.99■□□□□ 0.47
ABCA3-202ENST00000382381 ZNF777Q9ULD5 760 aaPredicted RBP17.92■□□□□ 0.46
ABCA3-202ENST00000382381 RB1CC1Q8TDY2 1594 aa17.85■□□□□ 0.45
ABCA3-202ENST00000382381 CCDC180Q9P1Z9 1646 aa17.85■□□□□ 0.45
ABCA3-202ENST00000382381 SALL2Q9Y467 1007 aaPredicted RBP17.85■□□□□ 0.45
ABCA3-202ENST00000382381 ZCCHC6Q5VYS8 1495 aaKnown RBP17.84■□□□□ 0.45
ABCA3-202ENST00000382381 EIF5BO60841 1220 aaKnown RBP17.83■□□□□ 0.44
ABCA3-202ENST00000382381 NPM1P06748 294 aaKnown RBP eCLIP17.81■□□□□ 0.44
ABCA3-202ENST00000382381 NEFMP07197 916 aa17.8■□□□□ 0.44
ABCA3-202ENST00000382381 ARXQ96QS3 562 aa17.77■□□□□ 0.44
ABCA3-202ENST00000382381 CHGAP10645 457 aaKnown RBP17.75■□□□□ 0.43
ABCA3-202ENST00000382381 SENP3Q9H4L4 574 aaPredicted RBP17.74■□□□□ 0.43
ABCA3-202ENST00000382381 CHMP7Q8WUX9 453 aaPredicted RBP17.73■□□□□ 0.43
ABCA3-202ENST00000382381 CSRNP3Q8WYN3 585 aa17.73■□□□□ 0.43
ABCA3-202ENST00000382381 ESF1Q9H501 851 aaKnown RBP17.73■□□□□ 0.43
ABCA3-202ENST00000382381 ANP32AP39687 249 aaKnown RBP17.71■□□□□ 0.43
ABCA3-202ENST00000382381 PLEKHG5O94827 1062 aa17.7■□□□□ 0.42
ABCA3-202ENST00000382381 HSP90AA1P07900 732 aaKnown RBP17.68■□□□□ 0.42
ABCA3-202ENST00000382381 FKBP8Q14318 412 aa17.66■□□□□ 0.42
ABCA3-202ENST00000382381 FAM9BQ8IZU0 186 aa17.65■□□□□ 0.42
ABCA3-202ENST00000382381 STAG3Q9UJ98 1225 aa17.6■□□□□ 0.41
ABCA3-202ENST00000382381 A0A0G2JS52 829 aa17.6■□□□□ 0.41
ABCA3-202ENST00000382381 ERCC6Q03468 1493 aa17.6■□□□□ 0.41
ABCA3-202ENST00000382381 NBR1Q14596 966 aa17.6■□□□□ 0.41
ABCA3-202ENST00000382381 ACIN1Q9UKV3 1341 aaKnown RBP17.57■□□□□ 0.4
ABCA3-202ENST00000382381 HNRNPUQ00839 825 aaKnown RBP eCLIP17.57■□□□□ 0.4
ABCA3-202ENST00000382381 SCAF1Q9H7N4 1312 aaKnown RBP17.56■□□□□ 0.4
ABCA3-202ENST00000382381 SENP3-EIF4A1A0A087X0R7 540 aa17.56■□□□□ 0.4
ABCA3-202ENST00000382381 DDX10Q13206 875 aaKnown RBP17.54■□□□□ 0.4
ABCA3-202ENST00000382381 KCNH8Q96L42 1107 aa17.53■□□□□ 0.4
ABCA3-202ENST00000382381 IRX6P78412 446 aaPredicted RBP17.52■□□□□ 0.4
ABCA3-202ENST00000382381 NACADO15069 1562 aa17.52■□□□□ 0.39
ABCA3-202ENST00000382381 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.51■□□□□ 0.39
ABCA3-202ENST00000382381 ANP32BQ92688 251 aaKnown RBP17.5■□□□□ 0.39
ABCA3-202ENST00000382381 HIRIP3Q9BW71 556 aaPredicted RBP17.49■□□□□ 0.39
ABCA3-202ENST00000382381 CHIC2Q9UKJ5 165 aa17.48■□□□□ 0.39
ABCA3-202ENST00000382381 BAZ1BQ9UIG0 1483 aaKnown RBP17.47■□□□□ 0.39
ABCA3-202ENST00000382381 ZBTB7CA1YPR0 619 aa17.46■□□□□ 0.38
ABCA3-202ENST00000382381 KDM2AQ9Y2K7 1162 aa17.44■□□□□ 0.38
ABCA3-202ENST00000382381 UPF2Q9HAU5 1272 aaKnown RBP17.41■□□□□ 0.38
ABCA3-202ENST00000382381 TRHP20396 242 aaPredicted RBP17.4■□□□□ 0.38
ABCA3-202ENST00000382381 CCDC136Q96JN2 1154 aa17.37■□□□□ 0.37
ABCA3-202ENST00000382381 TONSLQ96HA7 1378 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms