RNA–Protein interactions for RNA: ENST00000381033.4

PDX1-201, Transcript of pancreatic and duodenal homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDX1, Length 2,501 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1-201ENST00000381033 NISCHQ9Y2I1 1504 aa37.07■■■■□ 3.52
PDX1-201ENST00000381033 CCDC180Q9P1Z9 1646 aa31.69■■■□□ 2.66
PDX1-201ENST00000381033 SHROOM4Q9ULL8 1493 aa31.35■■■□□ 2.61
PDX1-201ENST00000381033 ZCCHC6Q5VYS8 1495 aaKnown RBP31.23■■■□□ 2.59
PDX1-201ENST00000381033 DCAF8L2P0C7V8 631 aa31.07■■■□□ 2.56
PDX1-201ENST00000381033 SUPT5HO00267 1087 aaKnown RBP30.45■■■□□ 2.46
PDX1-201ENST00000381033 DCAF1Q9Y4B6 1507 aa30.32■■■□□ 2.44
PDX1-201ENST00000381033 ABCC9O60706 1549 aa30.03■■■□□ 2.4
PDX1-201ENST00000381033 SCRIBQ14160 1630 aa29.75■■■□□ 2.35
PDX1-201ENST00000381033 MYO15BQ96JP2 1530 aa29.64■■■□□ 2.33
PDX1-201ENST00000381033 NACADO15069 1562 aa29.46■■■□□ 2.31
PDX1-201ENST00000381033 CHIC1Q5VXU3 224 aa29.27■■■□□ 2.28
PDX1-201ENST00000381033 RSF1Q96T23 1441 aaPredicted RBP29.15■■■□□ 2.26
PDX1-201ENST00000381033 RB1CC1Q8TDY2 1594 aa29.12■■■□□ 2.25
PDX1-201ENST00000381033 CECR2Q9BXF3 1484 aa29.06■■■□□ 2.24
PDX1-201ENST00000381033 MROH2BQ7Z745 1585 aa28.86■■■□□ 2.21
PDX1-201ENST00000381033 UNC13AQ9UPW8 1703 aa28.76■■■□□ 2.19
PDX1-201ENST00000381033 WIZO95785 1651 aa28.67■■■□□ 2.18
PDX1-201ENST00000381033 PABPN1Q86U42 306 aaKnown RBP eCLIP28.67■■■□□ 2.18
PDX1-201ENST00000381033 BAZ1AQ9NRL2 1556 aaPredicted RBP28.47■■■□□ 2.15
PDX1-201ENST00000381033 LOC105371045A0A1W2PR82 267 aa28.47■■■□□ 2.15
PDX1-201ENST00000381033 BICRAQ9NZM4 1560 aa28.43■■■□□ 2.14
PDX1-201ENST00000381033 SMARCA4P51532 1647 aa28.35■■■□□ 2.13
PDX1-201ENST00000381033 TRIM41Q8WV44 630 aa28.33■■■□□ 2.13
PDX1-201ENST00000381033 FAM9AQ8IZU1 332 aaPredicted RBP28.19■■■□□ 2.1
PDX1-201ENST00000381033 TOP2AP11388 1531 aaKnown RBP28.12■■■□□ 2.09
PDX1-201ENST00000381033 CCDC88BA6NC98 1476 aa28.06■■■□□ 2.08
PDX1-201ENST00000381033 EHMT2Q96KQ7 1210 aa28.04■■■□□ 2.08
PDX1-201ENST00000381033 PELP1Q8IZL8 1130 aaKnown RBP28.01■■■□□ 2.08
PDX1-201ENST00000381033 SMARCA2P51531 1590 aa27.99■■■□□ 2.07
PDX1-201ENST00000381033 EIF4G1Q04637 1599 aaKnown RBP27.96■■■□□ 2.07
PDX1-201ENST00000381033 ABCC8Q09428 1581 aa27.85■■■□□ 2.05
PDX1-201ENST00000381033 PCGF6Q9BYE7 350 aa27.8■■■□□ 2.04
PDX1-201ENST00000381033 ATAD2BQ9ULI0 1458 aa27.78■■■□□ 2.04
PDX1-201ENST00000381033 PEG3Q9GZU2 1588 aa27.78■■■□□ 2.04
PDX1-201ENST00000381033 MYT1Q01538 1121 aa27.7■■■□□ 2.02
PDX1-201ENST00000381033 BAZ1BQ9UIG0 1483 aaKnown RBP27.66■■■□□ 2.02
PDX1-201ENST00000381033 SOGA1O94964 1423 aa27.48■■□□□ 1.99
PDX1-201ENST00000381033 RUSC2Q8N2Y8 1516 aa27.41■■□□□ 1.98
PDX1-201ENST00000381033 WRNQ14191 1432 aaPredicted RBP eCLIP27.37■■□□□ 1.97
PDX1-201ENST00000381033 NCAPD3P42695 1498 aa27.31■■□□□ 1.96
PDX1-201ENST00000381033 SYNJ1O43426 1573 aa27.3■■□□□ 1.96
PDX1-201ENST00000381033 HRCP23327 699 aa27.3■■□□□ 1.96
PDX1-201ENST00000381033 TRIM26Q12899 539 aaPredicted RBP27.3■■□□□ 1.96
PDX1-201ENST00000381033 PPARGC1BQ86YN6 1023 aaKnown RBP27.28■■□□□ 1.96
PDX1-201ENST00000381033 HMGXB3Q12766 1538 aa27.21■■□□□ 1.95
PDX1-201ENST00000381033 CSRNP3Q8WYN3 585 aa27.21■■□□□ 1.95
PDX1-201ENST00000381033 UBTFP17480 764 aaKnown RBP27.09■■□□□ 1.93
PDX1-201ENST00000381033 EEA1Q15075 1411 aa27.04■■□□□ 1.92
PDX1-201ENST00000381033 CEP162Q5TB80 1403 aa27■■□□□ 1.91
PDX1-201ENST00000381033 CC2D2AQ9P2K1 1620 aa26.99■■□□□ 1.91
PDX1-201ENST00000381033 TNIKQ9UKE5 1360 aa26.96■■□□□ 1.91
PDX1-201ENST00000381033 TOP2BQ02880 1626 aa26.95■■□□□ 1.9
PDX1-201ENST00000381033 CFTRP13569 1480 aa26.95■■□□□ 1.9
PDX1-201ENST00000381033 TTBK1Q5TCY1 1321 aaPredicted RBP26.95■■□□□ 1.9
PDX1-201ENST00000381033 GOLGA3Q08378 1498 aa26.9■■□□□ 1.9
PDX1-201ENST00000381033 CUX1P39880 1505 aa26.88■■□□□ 1.89
PDX1-201ENST00000381033 BIVM-ERCC5R4GMW8 1640 aa26.84■■□□□ 1.89
PDX1-201ENST00000381033 RANGAP1P46060 587 aaPredicted RBP26.83■■□□□ 1.89
PDX1-201ENST00000381033 RAPGEF2Q9Y4G8 1499 aa26.81■■□□□ 1.88
PDX1-201ENST00000381033 CEP164Q9UPV0 1460 aa26.8■■□□□ 1.88
PDX1-201ENST00000381033 CADPSQ9ULU8 1353 aa26.77■■□□□ 1.88
PDX1-201ENST00000381033 KIF21BO75037 1637 aa26.75■■□□□ 1.87
PDX1-201ENST00000381033 DNAJC5BQ9UF47 199 aa26.7■■□□□ 1.87
PDX1-201ENST00000381033 CLIP1P30622 1438 aa26.62■■□□□ 1.85
PDX1-201ENST00000381033 NESP48681 1621 aa26.62■■□□□ 1.85
PDX1-201ENST00000381033 PRDM2Q13029 1718 aa26.61■■□□□ 1.85
PDX1-201ENST00000381033 KIF27Q86VH2 1401 aa26.55■■□□□ 1.84
PDX1-201ENST00000381033 PRXQ9BXM0 1461 aa26.55■■□□□ 1.84
PDX1-201ENST00000381033 FANCD2Q9BXW9 1451 aa26.52■■□□□ 1.84
PDX1-201ENST00000381033 FGD5Q6ZNL6 1462 aa26.48■■□□□ 1.83
PDX1-201ENST00000381033 CUX2O14529 1486 aa26.47■■□□□ 1.83
PDX1-201ENST00000381033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.47■■□□□ 1.83
PDX1-201ENST00000381033 ERICH3Q5RHP9 1530 aa26.41■■□□□ 1.82
PDX1-201ENST00000381033 VPS8Q8N3P4 1428 aa26.4■■□□□ 1.82
PDX1-201ENST00000381033 IGF1RP08069 1367 aa26.38■■□□□ 1.81
PDX1-201ENST00000381033 RAD54L2Q9Y4B4 1467 aa26.35■■□□□ 1.81
PDX1-201ENST00000381033 ZEB1P37275 1124 aaPredicted RBP26.3■■□□□ 1.8
PDX1-201ENST00000381033 PRKCSHP14314 528 aaPredicted RBP26.29■■□□□ 1.8
PDX1-201ENST00000381033 TOPBP1Q92547 1522 aa26.28■■□□□ 1.8
PDX1-201ENST00000381033 ARAP1Q96P48 1450 aa26.28■■□□□ 1.8
PDX1-201ENST00000381033 CCER1Q8TC90 406 aaPredicted RBP26.27■■□□□ 1.8
PDX1-201ENST00000381033 POLA1P09884 1462 aaPredicted RBP26.25■■□□□ 1.79
PDX1-201ENST00000381033 APLP2Q06481 763 aa26.25■■□□□ 1.79
PDX1-201ENST00000381033 CARMIL1Q5VZK9 1371 aa26.24■■□□□ 1.79
PDX1-201ENST00000381033 DNMBPQ6XZF7 1577 aa26.24■■□□□ 1.79
PDX1-201ENST00000381033 LAMC3Q9Y6N6 1575 aa26.2■■□□□ 1.78
PDX1-201ENST00000381033 URB2Q14146 1524 aaKnown RBP26.2■■□□□ 1.78
PDX1-201ENST00000381033 HNRNPUL2Q1KMD3 747 aaKnown RBP26.18■■□□□ 1.78
PDX1-201ENST00000381033 ARHGAP35Q9NRY4 1499 aa26.16■■□□□ 1.78
PDX1-201ENST00000381033 KANK4Q5T7N3 995 aaPredicted RBP26.16■■□□□ 1.78
PDX1-201ENST00000381033 ABCA10Q8WWZ4 1543 aa26.11■■□□□ 1.77
PDX1-201ENST00000381033 TDRD9Q8NDG6 1382 aaKnown RBP26.08■■□□□ 1.76
PDX1-201ENST00000381033 KIF21AQ7Z4S6 1674 aa26.08■■□□□ 1.76
PDX1-201ENST00000381033 PDS5BQ9NTI5 1447 aa26.07■■□□□ 1.76
PDX1-201ENST00000381033 P3H3Q8IVL6 736 aa26.07■■□□□ 1.76
PDX1-201ENST00000381033 SLC24A1O60721 1099 aa25.97■■□□□ 1.75
PDX1-201ENST00000381033 WDR97A6NE52 1622 aa25.91■■□□□ 1.74
PDX1-201ENST00000381033 GAPVD1Q14C86 1478 aa25.87■■□□□ 1.73
PDX1-201ENST00000381033 ATP1B4Q9UN42 357 aaPredicted RBP25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms