RNA–Protein interactions for RNA: ENST00000380281.5

PRPF40B-202, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRPF40B, Length 3,154 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-202ENST00000380281 NISCHQ9Y2I1 1504 aa24.25■■□□□ 1.47
PRPF40B-202ENST00000380281 SHROOM4Q9ULL8 1493 aa21.93■■□□□ 1.1
PRPF40B-202ENST00000380281 SUPT5HO00267 1087 aaKnown RBP21.66■■□□□ 1.06
PRPF40B-202ENST00000380281 DCAF8L2P0C7V8 631 aa21.42■■□□□ 1.02
PRPF40B-202ENST00000380281 HRCP23327 699 aa20.76■□□□□ 0.91
PRPF40B-202ENST00000380281 PCGF6Q9BYE7 350 aa20.68■□□□□ 0.9
PRPF40B-202ENST00000380281 CHIC1Q5VXU3 224 aa20.67■□□□□ 0.9
PRPF40B-202ENST00000380281 PPARGC1BQ86YN6 1023 aaKnown RBP20.56■□□□□ 0.88
PRPF40B-202ENST00000380281 MYO15BQ96JP2 1530 aa20.55■□□□□ 0.88
PRPF40B-202ENST00000380281 LOC105371045A0A1W2PR82 267 aa20.48■□□□□ 0.87
PRPF40B-202ENST00000380281 ZCCHC6Q5VYS8 1495 aaKnown RBP20.44■□□□□ 0.86
PRPF40B-202ENST00000380281 EHMT2Q96KQ7 1210 aa20.4■□□□□ 0.86
PRPF40B-202ENST00000380281 PELP1Q8IZL8 1130 aaKnown RBP20.36■□□□□ 0.85
PRPF40B-202ENST00000380281 FAM9AQ8IZU1 332 aaPredicted RBP20.19■□□□□ 0.82
PRPF40B-202ENST00000380281 CCDC180Q9P1Z9 1646 aa20.01■□□□□ 0.79
PRPF40B-202ENST00000380281 SCAF1Q9H7N4 1312 aaKnown RBP19.93■□□□□ 0.78
PRPF40B-202ENST00000380281 TRIM41Q8WV44 630 aa19.85■□□□□ 0.77
PRPF40B-202ENST00000380281 TRIM26Q12899 539 aaPredicted RBP19.78■□□□□ 0.76
PRPF40B-202ENST00000380281 TTBK1Q5TCY1 1321 aaPredicted RBP19.71■□□□□ 0.75
PRPF40B-202ENST00000380281 DCAF1Q9Y4B6 1507 aa19.6■□□□□ 0.73
PRPF40B-202ENST00000380281 MYT1Q01538 1121 aa19.58■□□□□ 0.73
PRPF40B-202ENST00000380281 SCRIBQ14160 1630 aa19.58■□□□□ 0.72
PRPF40B-202ENST00000380281 RSF1Q96T23 1441 aaPredicted RBP19.49■□□□□ 0.71
PRPF40B-202ENST00000380281 ABCC9O60706 1549 aa19.42■□□□□ 0.7
PRPF40B-202ENST00000380281 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.39■□□□□ 0.69
PRPF40B-202ENST00000380281 RB1CC1Q8TDY2 1594 aa19.33■□□□□ 0.68
PRPF40B-202ENST00000380281 CECR2Q9BXF3 1484 aa19.28■□□□□ 0.68
PRPF40B-202ENST00000380281 NEUROD1Q13562 356 aa19.28■□□□□ 0.68
PRPF40B-202ENST00000380281 CCER1Q8TC90 406 aaPredicted RBP19.27■□□□□ 0.67
PRPF40B-202ENST00000380281 ACIN1Q9UKV3 1341 aaKnown RBP19.26■□□□□ 0.67
PRPF40B-202ENST00000380281 ZEB1P37275 1124 aaPredicted RBP19.25■□□□□ 0.67
PRPF40B-202ENST00000380281 GTF3C3Q9Y5Q9 886 aa19.22■□□□□ 0.67
PRPF40B-202ENST00000380281 RANGAP1P46060 587 aaPredicted RBP19.13■□□□□ 0.65
PRPF40B-202ENST00000380281 MROH2BQ7Z745 1585 aa19.08■□□□□ 0.65
PRPF40B-202ENST00000380281 UBTFP17480 764 aaKnown RBP19.05■□□□□ 0.64
PRPF40B-202ENST00000380281 PABPN1Q86U42 306 aaKnown RBP eCLIP18.97■□□□□ 0.63
PRPF40B-202ENST00000380281 WIZO95785 1651 aa18.97■□□□□ 0.63
PRPF40B-202ENST00000380281 CENPBP07199 599 aaPredicted RBP18.93■□□□□ 0.62
PRPF40B-202ENST00000380281 YTHDC1Q96MU7 727 aaKnown RBP18.92■□□□□ 0.62
PRPF40B-202ENST00000380281 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
PRPF40B-202ENST00000380281 DIEXFQ68CQ4 756 aaKnown RBP18.87■□□□□ 0.61
PRPF40B-202ENST00000380281 ABCC8Q09428 1581 aa18.85■□□□□ 0.61
PRPF40B-202ENST00000380281 CCDC88BA6NC98 1476 aa18.79■□□□□ 0.6
PRPF40B-202ENST00000380281 SOGA1O94964 1423 aa18.78■□□□□ 0.6
PRPF40B-202ENST00000380281 CSRNP3Q8WYN3 585 aa18.72■□□□□ 0.59
PRPF40B-202ENST00000380281 RUSC2Q8N2Y8 1516 aa18.7■□□□□ 0.58
PRPF40B-202ENST00000380281 NACADO15069 1562 aa18.69■□□□□ 0.58
PRPF40B-202ENST00000380281 CEP162Q5TB80 1403 aa18.68■□□□□ 0.58
PRPF40B-202ENST00000380281 BCL11AQ9H165 835 aa18.59■□□□□ 0.57
PRPF40B-202ENST00000380281 APLP2Q06481 763 aa18.58■□□□□ 0.57
PRPF40B-202ENST00000380281 BAZ1AQ9NRL2 1556 aaPredicted RBP18.55■□□□□ 0.56
PRPF40B-202ENST00000380281 ZNF316A6NFI3 1004 aaPredicted RBP18.53■□□□□ 0.56
PRPF40B-202ENST00000380281 MIER1Q8N108 512 aa18.5■□□□□ 0.55
PRPF40B-202ENST00000380281 ITGAEP38570 1179 aa18.48■□□□□ 0.55
PRPF40B-202ENST00000380281 TNIKQ9UKE5 1360 aa18.45■□□□□ 0.54
PRPF40B-202ENST00000380281 TOP2AP11388 1531 aaKnown RBP18.4■□□□□ 0.54
PRPF40B-202ENST00000380281 SMARCA2P51531 1590 aa18.39■□□□□ 0.54
PRPF40B-202ENST00000380281 SMARCA4P51532 1647 aa18.37■□□□□ 0.53
PRPF40B-202ENST00000380281 WRNQ14191 1432 aaPredicted RBP eCLIP18.37■□□□□ 0.53
PRPF40B-202ENST00000380281 EIF4G1Q04637 1599 aaKnown RBP18.33■□□□□ 0.52
PRPF40B-202ENST00000380281 CLIP1P30622 1438 aa18.32■□□□□ 0.52
PRPF40B-202ENST00000380281 ANP32EQ9BTT0 268 aa18.32■□□□□ 0.52
PRPF40B-202ENST00000380281 GOLGA3Q08378 1498 aa18.31■□□□□ 0.52
PRPF40B-202ENST00000380281 ATP1B4Q9UN42 357 aaPredicted RBP18.24■□□□□ 0.51
PRPF40B-202ENST00000380281 KANK4Q5T7N3 995 aaPredicted RBP18.21■□□□□ 0.51
PRPF40B-202ENST00000380281 RAPGEF2Q9Y4G8 1499 aa18.2■□□□□ 0.5
PRPF40B-202ENST00000380281 EEA1Q15075 1411 aa18.17■□□□□ 0.5
PRPF40B-202ENST00000380281 TSHZ2Q9NRE2 1034 aa18.16■□□□□ 0.5
PRPF40B-202ENST00000380281 CEP164Q9UPV0 1460 aa18.14■□□□□ 0.5
PRPF40B-202ENST00000380281 SUPT16HQ9Y5B9 1047 aaKnown RBP18.14■□□□□ 0.49
PRPF40B-202ENST00000380281 SYNJ1O43426 1573 aa18.14■□□□□ 0.49
PRPF40B-202ENST00000380281 P3H3Q8IVL6 736 aa18.12■□□□□ 0.49
PRPF40B-202ENST00000380281 UNC13AQ9UPW8 1703 aa18.11■□□□□ 0.49
PRPF40B-202ENST00000380281 VPS8Q8N3P4 1428 aa18.09■□□□□ 0.49
PRPF40B-202ENST00000380281 BAZ1BQ9UIG0 1483 aaKnown RBP18.07■□□□□ 0.48
PRPF40B-202ENST00000380281 PRKCSHP14314 528 aaPredicted RBP18.06■□□□□ 0.48
PRPF40B-202ENST00000380281 HIRIP3Q9BW71 556 aaPredicted RBP18.06■□□□□ 0.48
PRPF40B-202ENST00000380281 KCNH8Q96L42 1107 aa18.03■□□□□ 0.48
PRPF40B-202ENST00000380281 BCANQ96GW7 911 aa18.03■□□□□ 0.48
PRPF40B-202ENST00000380281 ATAD2BQ9ULI0 1458 aa18.01■□□□□ 0.47
PRPF40B-202ENST00000380281 FAM50AQ14320 339 aaKnown RBP17.99■□□□□ 0.47
PRPF40B-202ENST00000380281 BICRAQ9NZM4 1560 aa17.98■□□□□ 0.47
PRPF40B-202ENST00000380281 KIF21BO75037 1637 aa17.94■□□□□ 0.46
PRPF40B-202ENST00000380281 DHX57Q6P158 1386 aaKnown RBP17.93■□□□□ 0.46
PRPF40B-202ENST00000380281 SIN3AQ96ST3 1273 aa17.92■□□□□ 0.46
PRPF40B-202ENST00000380281 DDX10Q13206 875 aaKnown RBP17.9■□□□□ 0.46
PRPF40B-202ENST00000380281 ARAP1Q96P48 1450 aa17.84■□□□□ 0.45
PRPF40B-202ENST00000380281 CLSPNQ9HAW4 1339 aa17.8■□□□□ 0.44
PRPF40B-202ENST00000380281 TRIM52Q96A61 297 aa17.77■□□□□ 0.44
PRPF40B-202ENST00000380281 CCNB3Q8WWL7 1395 aa17.77■□□□□ 0.44
PRPF40B-202ENST00000380281 KIF27Q86VH2 1401 aa17.75■□□□□ 0.43
PRPF40B-202ENST00000380281 RAB3GAP2Q9H2M9 1393 aa17.73■□□□□ 0.43
PRPF40B-202ENST00000380281 ARID3CA6NKF2 412 aa17.72■□□□□ 0.43
PRPF40B-202ENST00000380281 FKBP8Q14318 412 aa17.71■□□□□ 0.43
PRPF40B-202ENST00000380281 RBM19Q9Y4C8 960 aaKnown RBP17.71■□□□□ 0.43
PRPF40B-202ENST00000380281 CNGB1Q14028 1251 aaPredicted RBP17.69■□□□□ 0.42
PRPF40B-202ENST00000380281 PRXQ9BXM0 1461 aa17.69■□□□□ 0.42
PRPF40B-202ENST00000380281 CUX2O14529 1486 aa17.69■□□□□ 0.42
PRPF40B-202ENST00000380281 TOP2BQ02880 1626 aa17.68■□□□□ 0.42
PRPF40B-202ENST00000380281 CUX1P39880 1505 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 145.4 ms