RNA–Protein interactions for RNA: ENST00000376230.7

ZNF550-203, Transcript of zinc finger protein 550, humanhuman

TSL 1 (best)

Gene ZNF550, Length 3,719 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF550-203ENST00000376230 NISCHQ9Y2I1 1504 aa19.28■□□□□ 0.68
ZNF550-203ENST00000376230 DCAF8L2P0C7V8 631 aa18.28■□□□□ 0.52
ZNF550-203ENST00000376230 SHROOM4Q9ULL8 1493 aa18.02■□□□□ 0.48
ZNF550-203ENST00000376230 SUPT5HO00267 1087 aaKnown RBP17.82■□□□□ 0.44
ZNF550-203ENST00000376230 EHMT2Q96KQ7 1210 aa17.13■□□□□ 0.33
ZNF550-203ENST00000376230 FAM9AQ8IZU1 332 aaPredicted RBP16.74■□□□□ 0.27
ZNF550-203ENST00000376230 PCGF6Q9BYE7 350 aa16.57■□□□□ 0.24
ZNF550-203ENST00000376230 LOC105371045A0A1W2PR82 267 aa16.5■□□□□ 0.23
ZNF550-203ENST00000376230 CHIC1Q5VXU3 224 aa16.45■□□□□ 0.22
ZNF550-203ENST00000376230 TTBK1Q5TCY1 1321 aaPredicted RBP16.44■□□□□ 0.22
ZNF550-203ENST00000376230 PPARGC1BQ86YN6 1023 aaKnown RBP16.35■□□□□ 0.21
ZNF550-203ENST00000376230 HRCP23327 699 aa16.26■□□□□ 0.19
ZNF550-203ENST00000376230 TRIM41Q8WV44 630 aa16.24■□□□□ 0.19
ZNF550-203ENST00000376230 ABCC9O60706 1549 aa16.21■□□□□ 0.18
ZNF550-203ENST00000376230 RANGAP1P46060 587 aaPredicted RBP16.16■□□□□ 0.18
ZNF550-203ENST00000376230 ZCCHC6Q5VYS8 1495 aaKnown RBP16.09■□□□□ 0.17
ZNF550-203ENST00000376230 PABPN1Q86U42 306 aaKnown RBP eCLIP16.01■□□□□ 0.15
ZNF550-203ENST00000376230 MYO15BQ96JP2 1530 aa15.97■□□□□ 0.15
ZNF550-203ENST00000376230 SCRIBQ14160 1630 aa15.81■□□□□ 0.12
ZNF550-203ENST00000376230 UBTFP17480 764 aaKnown RBP15.78■□□□□ 0.12
ZNF550-203ENST00000376230 TRIM26Q12899 539 aaPredicted RBP15.69■□□□□ 0.1
ZNF550-203ENST00000376230 CCDC180Q9P1Z9 1646 aa15.69■□□□□ 0.1
ZNF550-203ENST00000376230 CCER1Q8TC90 406 aaPredicted RBP15.64■□□□□ 0.09
ZNF550-203ENST00000376230 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.61■□□□□ 0.09
ZNF550-203ENST00000376230 RSF1Q96T23 1441 aaPredicted RBP15.51■□□□□ 0.07
ZNF550-203ENST00000376230 CECR2Q9BXF3 1484 aa15.49■□□□□ 0.07
ZNF550-203ENST00000376230 APLP2Q06481 763 aa15.48■□□□□ 0.07
ZNF550-203ENST00000376230 ATP1B4Q9UN42 357 aaPredicted RBP15.48■□□□□ 0.07
ZNF550-203ENST00000376230 HNRNPUL2Q1KMD3 747 aaKnown RBP15.47■□□□□ 0.07
ZNF550-203ENST00000376230 ITGAEP38570 1179 aa15.4■□□□□ 0.06
ZNF550-203ENST00000376230 ZEB1P37275 1124 aaPredicted RBP15.39■□□□□ 0.05
ZNF550-203ENST00000376230 YTHDC1Q96MU7 727 aaKnown RBP15.35■□□□□ 0.05
ZNF550-203ENST00000376230 SCAF1Q9H7N4 1312 aaKnown RBP15.34■□□□□ 0.05
ZNF550-203ENST00000376230 DCAF1Q9Y4B6 1507 aa15.32■□□□□ 0.04
ZNF550-203ENST00000376230 PELP1Q8IZL8 1130 aaKnown RBP15.26■□□□□ 0.03
ZNF550-203ENST00000376230 RB1CC1Q8TDY2 1594 aa15.25■□□□□ 0.03
ZNF550-203ENST00000376230 MROH2BQ7Z745 1585 aa15.21■□□□□ 0.03
ZNF550-203ENST00000376230 CSRNP3Q8WYN3 585 aa15.19■□□□□ 0.02
ZNF550-203ENST00000376230 P3H3Q8IVL6 736 aa15.12■□□□□ 0.01
ZNF550-203ENST00000376230 GTF3C3Q9Y5Q9 886 aa15.11■□□□□ 0.01
ZNF550-203ENST00000376230 NEUROD1Q13562 356 aa15.1■□□□□ 0.01
ZNF550-203ENST00000376230 DIEXFQ68CQ4 756 aaKnown RBP15.07■□□□□ 0
ZNF550-203ENST00000376230 CENPBP07199 599 aaPredicted RBP15.07■□□□□ 0
ZNF550-203ENST00000376230 WIZO95785 1651 aa15.04■□□□□ -0
ZNF550-203ENST00000376230 ACIN1Q9UKV3 1341 aaKnown RBP15.03■□□□□ -0
ZNF550-203ENST00000376230 ABCC8Q09428 1581 aa15.03■□□□□ -0
ZNF550-203ENST00000376230 SOGA1O94964 1423 aa15.03■□□□□ -0
ZNF550-203ENST00000376230 ARID3CA6NKF2 412 aa15□□□□□ -0.01
ZNF550-203ENST00000376230 NACADO15069 1562 aa14.98□□□□□ -0.01
ZNF550-203ENST00000376230 CCDC88BA6NC98 1476 aa14.96□□□□□ -0.01
ZNF550-203ENST00000376230 CNGB1Q14028 1251 aaPredicted RBP14.9□□□□□ -0.02
ZNF550-203ENST00000376230 FAM50AQ14320 339 aaKnown RBP14.9□□□□□ -0.02
ZNF550-203ENST00000376230 RUSC2Q8N2Y8 1516 aa14.9□□□□□ -0.02
ZNF550-203ENST00000376230 CEP162Q5TB80 1403 aa14.86□□□□□ -0.03
ZNF550-203ENST00000376230 BAZ1AQ9NRL2 1556 aaPredicted RBP14.81□□□□□ -0.04
ZNF550-203ENST00000376230 WRNQ14191 1432 aaPredicted RBP eCLIP14.8□□□□□ -0.04
ZNF550-203ENST00000376230 HIRIP3Q9BW71 556 aaPredicted RBP14.74□□□□□ -0.05
ZNF550-203ENST00000376230 CLIP1P30622 1438 aa14.72□□□□□ -0.05
ZNF550-203ENST00000376230 BAZ1BQ9UIG0 1483 aaKnown RBP14.71□□□□□ -0.05
ZNF550-203ENST00000376230 ZNF316A6NFI3 1004 aaPredicted RBP14.71□□□□□ -0.05
ZNF550-203ENST00000376230 FBLN2P98095 1184 aa14.68□□□□□ -0.06
ZNF550-203ENST00000376230 MIER1Q8N108 512 aa14.68□□□□□ -0.06
ZNF550-203ENST00000376230 KANK4Q5T7N3 995 aaPredicted RBP14.66□□□□□ -0.06
ZNF550-203ENST00000376230 POLR3GLQ9BT43 218 aa14.66□□□□□ -0.06
ZNF550-203ENST00000376230 TNIKQ9UKE5 1360 aa14.63□□□□□ -0.07
ZNF550-203ENST00000376230 GOLGA3Q08378 1498 aa14.6□□□□□ -0.07
ZNF550-203ENST00000376230 SMARCA4P51532 1647 aa14.58□□□□□ -0.08
ZNF550-203ENST00000376230 BCANQ96GW7 911 aa14.57□□□□□ -0.08
ZNF550-203ENST00000376230 CHIC2Q9UKJ5 165 aa14.57□□□□□ -0.08
ZNF550-203ENST00000376230 TOP2AP11388 1531 aaKnown RBP14.56□□□□□ -0.08
ZNF550-203ENST00000376230 TRIM52Q96A61 297 aa14.56□□□□□ -0.08
ZNF550-203ENST00000376230 RAPGEF2Q9Y4G8 1499 aa14.53□□□□□ -0.08
ZNF550-203ENST00000376230 MYT1Q01538 1121 aa14.53□□□□□ -0.08
ZNF550-203ENST00000376230 ATAD2BQ9ULI0 1458 aa14.52□□□□□ -0.09
ZNF550-203ENST00000376230 SMARCA2P51531 1590 aa14.51□□□□□ -0.09
ZNF550-203ENST00000376230 SIN3AQ96ST3 1273 aa14.5□□□□□ -0.09
ZNF550-203ENST00000376230 DDX10Q13206 875 aaKnown RBP14.48□□□□□ -0.09
ZNF550-203ENST00000376230 ZNF326Q5BKZ1 582 aaKnown RBP14.48□□□□□ -0.09
ZNF550-203ENST00000376230 DNAJC5BQ9UF47 199 aa14.47□□□□□ -0.09
ZNF550-203ENST00000376230 CEP164Q9UPV0 1460 aa14.47□□□□□ -0.09
ZNF550-203ENST00000376230 SENP3-EIF4A1A0A087X0R7 540 aa14.46□□□□□ -0.09
ZNF550-203ENST00000376230 ZNF777Q9ULD5 760 aaPredicted RBP14.45□□□□□ -0.1
ZNF550-203ENST00000376230 EEA1Q15075 1411 aa14.42□□□□□ -0.1
ZNF550-203ENST00000376230 CUX2O14529 1486 aa14.41□□□□□ -0.1
ZNF550-203ENST00000376230 RRP7BPQ9NSQ0 103 aa14.41□□□□□ -0.1
ZNF550-203ENST00000376230 KIF27Q86VH2 1401 aa14.39□□□□□ -0.11
ZNF550-203ENST00000376230 TDRD9Q8NDG6 1382 aaKnown RBP14.37□□□□□ -0.11
ZNF550-203ENST00000376230 VPS8Q8N3P4 1428 aa14.35□□□□□ -0.11
ZNF550-203ENST00000376230 CARMIL1Q5VZK9 1371 aa14.33□□□□□ -0.12
ZNF550-203ENST00000376230 MYT1LQ9UL68 1186 aa14.32□□□□□ -0.12
ZNF550-203ENST00000376230 SYNJ1O43426 1573 aa14.32□□□□□ -0.12
ZNF550-203ENST00000376230 KCNH8Q96L42 1107 aa14.3□□□□□ -0.12
ZNF550-203ENST00000376230 BICRAQ9NZM4 1560 aa14.29□□□□□ -0.12
ZNF550-203ENST00000376230 FOXD1Q16676 465 aa14.28□□□□□ -0.12
ZNF550-203ENST00000376230 MTUS2Q5JR59 1369 aa14.27□□□□□ -0.12
ZNF550-203ENST00000376230 SUPT16HQ9Y5B9 1047 aaKnown RBP14.25□□□□□ -0.13
ZNF550-203ENST00000376230 NEFLP07196 543 aa14.25□□□□□ -0.13
ZNF550-203ENST00000376230 CCNB3Q8WWL7 1395 aa14.23□□□□□ -0.13
ZNF550-203ENST00000376230 IRX6P78412 446 aaPredicted RBP14.22□□□□□ -0.13
ZNF550-203ENST00000376230 FHOD3Q2V2M9 1422 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms