RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 DCAF8L2P0C7V8 631 aa19.68■□□□□ 0.74
PTCH1-203ENST00000375274 NISCHQ9Y2I1 1504 aa19.59■□□□□ 0.73
PTCH1-203ENST00000375274 SUPT5HO00267 1087 aaKnown RBP19.21■□□□□ 0.67
PTCH1-203ENST00000375274 SHROOM4Q9ULL8 1493 aa18.86■□□□□ 0.61
PTCH1-203ENST00000375274 EHMT2Q96KQ7 1210 aa18.35■□□□□ 0.53
PTCH1-203ENST00000375274 PCGF6Q9BYE7 350 aa18.26■□□□□ 0.51
PTCH1-203ENST00000375274 FAM9AQ8IZU1 332 aaPredicted RBP18.04■□□□□ 0.48
PTCH1-203ENST00000375274 PELP1Q8IZL8 1130 aaKnown RBP17.98■□□□□ 0.47
PTCH1-203ENST00000375274 APLP2Q06481 763 aa17.89■□□□□ 0.45
PTCH1-203ENST00000375274 ZEB1P37275 1124 aaPredicted RBP17.86■□□□□ 0.45
PTCH1-203ENST00000375274 TTBK1Q5TCY1 1321 aaPredicted RBP17.79■□□□□ 0.44
PTCH1-203ENST00000375274 TRIM41Q8WV44 630 aa17.77■□□□□ 0.44
PTCH1-203ENST00000375274 CENPBP07199 599 aaPredicted RBP17.72■□□□□ 0.43
PTCH1-203ENST00000375274 CCER1Q8TC90 406 aaPredicted RBP17.68■□□□□ 0.42
PTCH1-203ENST00000375274 HRCP23327 699 aa17.6■□□□□ 0.41
PTCH1-203ENST00000375274 TRIM26Q12899 539 aaPredicted RBP17.5■□□□□ 0.39
PTCH1-203ENST00000375274 CHIC1Q5VXU3 224 aa17.45■□□□□ 0.38
PTCH1-203ENST00000375274 RANGAP1P46060 587 aaPredicted RBP17.44■□□□□ 0.38
PTCH1-203ENST00000375274 UBTFP17480 764 aaKnown RBP17.42■□□□□ 0.38
PTCH1-203ENST00000375274 PPARGC1BQ86YN6 1023 aaKnown RBP17.36■□□□□ 0.37
PTCH1-203ENST00000375274 LOC105371045A0A1W2PR82 267 aa17.36■□□□□ 0.37
PTCH1-203ENST00000375274 YTHDC1Q96MU7 727 aaKnown RBP17.31■□□□□ 0.36
PTCH1-203ENST00000375274 MYT1Q01538 1121 aa17.22■□□□□ 0.35
PTCH1-203ENST00000375274 ERICH6Q7L0X2 663 aa17.19■□□□□ 0.34
PTCH1-203ENST00000375274 ATP1B4Q9UN42 357 aaPredicted RBP17.15■□□□□ 0.34
PTCH1-203ENST00000375274 NEFLP07196 543 aa17.11■□□□□ 0.33
PTCH1-203ENST00000375274 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.94■□□□□ 0.3
PTCH1-203ENST00000375274 HNRNPUL2Q1KMD3 747 aaKnown RBP16.93■□□□□ 0.3
PTCH1-203ENST00000375274 DIEXFQ68CQ4 756 aaKnown RBP16.89■□□□□ 0.29
PTCH1-203ENST00000375274 ITGAEP38570 1179 aa16.85■□□□□ 0.29
PTCH1-203ENST00000375274 GTF3C3Q9Y5Q9 886 aa16.65■□□□□ 0.26
PTCH1-203ENST00000375274 CCDC180Q9P1Z9 1646 aa16.59■□□□□ 0.25
PTCH1-203ENST00000375274 POLR3GLQ9BT43 218 aa16.54■□□□□ 0.24
PTCH1-203ENST00000375274 ZNF316A6NFI3 1004 aaPredicted RBP16.5■□□□□ 0.23
PTCH1-203ENST00000375274 ACIN1Q9UKV3 1341 aaKnown RBP16.5■□□□□ 0.23
PTCH1-203ENST00000375274 CNGB1Q14028 1251 aaPredicted RBP16.46■□□□□ 0.23
PTCH1-203ENST00000375274 DAXXQ9UER7 740 aaPredicted RBP16.42■□□□□ 0.22
PTCH1-203ENST00000375274 DCAF1Q9Y4B6 1507 aa16.42■□□□□ 0.22
PTCH1-203ENST00000375274 FAM50AQ14320 339 aaKnown RBP16.42■□□□□ 0.22
PTCH1-203ENST00000375274 NEUROD1Q13562 356 aa16.37■□□□□ 0.21
PTCH1-203ENST00000375274 BCANQ96GW7 911 aa16.37■□□□□ 0.21
PTCH1-203ENST00000375274 ABCC9O60706 1549 aa16.36■□□□□ 0.21
PTCH1-203ENST00000375274 CSRNP3Q8WYN3 585 aa16.35■□□□□ 0.21
PTCH1-203ENST00000375274 PABPN1Q86U42 306 aaKnown RBP eCLIP16.32■□□□□ 0.2
PTCH1-203ENST00000375274 ZCCHC6Q5VYS8 1495 aaKnown RBP16.29■□□□□ 0.2
PTCH1-203ENST00000375274 ANP32CO43423 234 aa16.28■□□□□ 0.2
PTCH1-203ENST00000375274 RTL5Q5HYW3 569 aaPredicted RBP16.27■□□□□ 0.19
PTCH1-203ENST00000375274 TRIM52Q96A61 297 aa16.24■□□□□ 0.19
PTCH1-203ENST00000375274 MYT1LQ9UL68 1186 aa16.2■□□□□ 0.18
PTCH1-203ENST00000375274 CDK11AQ9UQ88 783 aaPredicted RBP16.17■□□□□ 0.18
PTCH1-203ENST00000375274 MYO15BQ96JP2 1530 aa16.15■□□□□ 0.18
PTCH1-203ENST00000375274 SCAF1Q9H7N4 1312 aaKnown RBP16.13■□□□□ 0.17
PTCH1-203ENST00000375274 CLSPNQ9HAW4 1339 aa16.11■□□□□ 0.17
PTCH1-203ENST00000375274 ZNF326Q5BKZ1 582 aaKnown RBP16.05■□□□□ 0.16
PTCH1-203ENST00000375274 P3H3Q8IVL6 736 aa16.03■□□□□ 0.16
PTCH1-203ENST00000375274 SLC4A1APQ9BWU0 796 aaKnown RBP16.01■□□□□ 0.15
PTCH1-203ENST00000375274 FKBP8Q14318 412 aa16■□□□□ 0.15
PTCH1-203ENST00000375274 SCRIBQ14160 1630 aa16■□□□□ 0.15
PTCH1-203ENST00000375274 DDX10Q13206 875 aaKnown RBP15.96■□□□□ 0.15
PTCH1-203ENST00000375274 MIER1Q8N108 512 aa15.96■□□□□ 0.15
PTCH1-203ENST00000375274 TONSLQ96HA7 1378 aa15.9■□□□□ 0.14
PTCH1-203ENST00000375274 HNRNPUQ00839 825 aaKnown RBP eCLIP15.89■□□□□ 0.13
PTCH1-203ENST00000375274 ANP32AP39687 249 aaKnown RBP15.87■□□□□ 0.13
PTCH1-203ENST00000375274 RSF1Q96T23 1441 aaPredicted RBP15.84■□□□□ 0.13
PTCH1-203ENST00000375274 ARID3CA6NKF2 412 aa15.84■□□□□ 0.13
PTCH1-203ENST00000375274 CLIP1P30622 1438 aa15.8■□□□□ 0.12
PTCH1-203ENST00000375274 FAM9BQ8IZU0 186 aa15.77■□□□□ 0.12
PTCH1-203ENST00000375274 CEP162Q5TB80 1403 aa15.77■□□□□ 0.12
PTCH1-203ENST00000375274 FBLN2P98095 1184 aa15.77■□□□□ 0.11
PTCH1-203ENST00000375274 NPM2Q86SE8 214 aaKnown RBP15.75■□□□□ 0.11
PTCH1-203ENST00000375274 ZNF777Q9ULD5 760 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-203ENST00000375274 EEA1Q15075 1411 aa15.72■□□□□ 0.11
PTCH1-203ENST00000375274 CANXP27824 592 aaKnown RBP15.72■□□□□ 0.11
PTCH1-203ENST00000375274 NACADO15069 1562 aa15.71■□□□□ 0.11
PTCH1-203ENST00000375274 HIRIP3Q9BW71 556 aaPredicted RBP15.7■□□□□ 0.1
PTCH1-203ENST00000375274 RB1CC1Q8TDY2 1594 aa15.68■□□□□ 0.1
PTCH1-203ENST00000375274 GOLGA3Q08378 1498 aa15.67■□□□□ 0.1
PTCH1-203ENST00000375274 CHIC2Q9UKJ5 165 aa15.66■□□□□ 0.1
PTCH1-203ENST00000375274 CCDC136Q96JN2 1154 aa15.66■□□□□ 0.1
PTCH1-203ENST00000375274 MRS2Q9HD23 443 aa15.66■□□□□ 0.1
PTCH1-203ENST00000375274 TNIKQ9UKE5 1360 aa15.66■□□□□ 0.1
PTCH1-203ENST00000375274 ZBTB47Q9UFB7 747 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-203ENST00000375274 IRX6P78412 446 aaPredicted RBP15.63■□□□□ 0.09
PTCH1-203ENST00000375274 TMC1Q8TDI8 760 aa15.63■□□□□ 0.09
PTCH1-203ENST00000375274 SALL2Q9Y467 1007 aaPredicted RBP15.61■□□□□ 0.09
PTCH1-203ENST00000375274 MTUS2Q5JR59 1369 aa15.6■□□□□ 0.09
PTCH1-203ENST00000375274 NBR1Q14596 966 aa15.57■□□□□ 0.08
PTCH1-203ENST00000375274 WRNQ14191 1432 aaPredicted RBP eCLIP15.57■□□□□ 0.08
PTCH1-203ENST00000375274 EIF4G2P78344 907 aaKnown RBP eCLIP15.57■□□□□ 0.08
PTCH1-203ENST00000375274 BCL11AQ9H165 835 aa15.56■□□□□ 0.08
PTCH1-203ENST00000375274 NEFMP07197 916 aa15.54■□□□□ 0.08
PTCH1-203ENST00000375274 CEP164Q9UPV0 1460 aa15.52■□□□□ 0.07
PTCH1-203ENST00000375274 ANP32EQ9BTT0 268 aa15.51■□□□□ 0.07
PTCH1-203ENST00000375274 EIF5BO60841 1220 aaKnown RBP15.51■□□□□ 0.07
PTCH1-203ENST00000375274 RRP7BPQ9NSQ0 103 aa15.49■□□□□ 0.07
PTCH1-203ENST00000375274 SUPT16HQ9Y5B9 1047 aaKnown RBP15.48■□□□□ 0.07
PTCH1-203ENST00000375274 UPF2Q9HAU5 1272 aaKnown RBP15.47■□□□□ 0.07
PTCH1-203ENST00000375274 KDM2AQ9Y2K7 1162 aa15.46■□□□□ 0.07
PTCH1-203ENST00000375274 TSPY4P0CV99 314 aa15.44■□□□□ 0.06
PTCH1-203ENST00000375274 TSPY10P0CW01 314 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms