RNA–Protein interactions for RNA: ENST00000374680.3

RXRB-201, Transcript of retinoid X receptor beta, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RXRB, Length 2,908 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRB-201ENST00000374680 NISCHQ9Y2I1 1504 aa35.12■■■■□ 3.21
RXRB-201ENST00000374680 SHROOM4Q9ULL8 1493 aa30.68■■■□□ 2.5
RXRB-201ENST00000374680 DCAF8L2P0C7V8 631 aa30.19■■■□□ 2.42
RXRB-201ENST00000374680 SUPT5HO00267 1087 aaKnown RBP30.08■■■□□ 2.41
RXRB-201ENST00000374680 ZCCHC6Q5VYS8 1495 aaKnown RBP29.59■■■□□ 2.33
RXRB-201ENST00000374680 CCDC180Q9P1Z9 1646 aa29.5■■■□□ 2.31
RXRB-201ENST00000374680 CHIC1Q5VXU3 224 aa28.83■■■□□ 2.21
RXRB-201ENST00000374680 MYO15BQ96JP2 1530 aa28.6■■■□□ 2.17
RXRB-201ENST00000374680 DCAF1Q9Y4B6 1507 aa28.43■■■□□ 2.14
RXRB-201ENST00000374680 LOC105371045A0A1W2PR82 267 aa28.3■■■□□ 2.12
RXRB-201ENST00000374680 ABCC9O60706 1549 aa28.25■■■□□ 2.11
RXRB-201ENST00000374680 SCRIBQ14160 1630 aa28.23■■■□□ 2.11
RXRB-201ENST00000374680 PCGF6Q9BYE7 350 aa28.13■■■□□ 2.09
RXRB-201ENST00000374680 EHMT2Q96KQ7 1210 aa28■■■□□ 2.07
RXRB-201ENST00000374680 FAM9AQ8IZU1 332 aaPredicted RBP27.94■■■□□ 2.06
RXRB-201ENST00000374680 RSF1Q96T23 1441 aaPredicted RBP27.92■■■□□ 2.06
RXRB-201ENST00000374680 TRIM41Q8WV44 630 aa27.8■■■□□ 2.04
RXRB-201ENST00000374680 HRCP23327 699 aa27.71■■■□□ 2.03
RXRB-201ENST00000374680 CECR2Q9BXF3 1484 aa27.7■■■□□ 2.02
RXRB-201ENST00000374680 RB1CC1Q8TDY2 1594 aa27.58■■■□□ 2.01
RXRB-201ENST00000374680 PPARGC1BQ86YN6 1023 aaKnown RBP27.58■■■□□ 2.01
RXRB-201ENST00000374680 NACADO15069 1562 aa27.5■■□□□ 1.99
RXRB-201ENST00000374680 MROH2BQ7Z745 1585 aa27.46■■□□□ 1.99
RXRB-201ENST00000374680 PABPN1Q86U42 306 aaKnown RBP eCLIP27.29■■□□□ 1.968e-7■■□□□ 14.1
RXRB-201ENST00000374680 WIZO95785 1651 aa27.28■■□□□ 1.96
RXRB-201ENST00000374680 TRIM26Q12899 539 aaPredicted RBP27.28■■□□□ 1.96
RXRB-201ENST00000374680 TTBK1Q5TCY1 1321 aaPredicted RBP26.98■■□□□ 1.91
RXRB-201ENST00000374680 BAZ1AQ9NRL2 1556 aaPredicted RBP26.92■■□□□ 1.9
RXRB-201ENST00000374680 ABCC8Q09428 1581 aa26.8■■□□□ 1.88
RXRB-201ENST00000374680 CCDC88BA6NC98 1476 aa26.78■■□□□ 1.88
RXRB-201ENST00000374680 SMARCA4P51532 1647 aa26.71■■□□□ 1.87
RXRB-201ENST00000374680 UNC13AQ9UPW8 1703 aa26.69■■□□□ 1.86
RXRB-201ENST00000374680 TOP2AP11388 1531 aaKnown RBP26.64■■□□□ 1.85
RXRB-201ENST00000374680 UBTFP17480 764 aaKnown RBP26.62■■□□□ 1.85
RXRB-201ENST00000374680 SOGA1O94964 1423 aa26.6■■□□□ 1.85
RXRB-201ENST00000374680 SMARCA2P51531 1590 aa26.56■■□□□ 1.84
RXRB-201ENST00000374680 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.56■■□□□ 1.84
RXRB-201ENST00000374680 RANGAP1P46060 587 aaPredicted RBP26.52■■□□□ 1.84
RXRB-201ENST00000374680 RUSC2Q8N2Y8 1516 aa26.49■■□□□ 1.83
RXRB-201ENST00000374680 EIF4G1Q04637 1599 aaKnown RBP26.49■■□□□ 1.83
RXRB-201ENST00000374680 BICRAQ9NZM4 1560 aa26.47■■□□□ 1.83
RXRB-201ENST00000374680 CSRNP3Q8WYN3 585 aa26.46■■□□□ 1.83
RXRB-201ENST00000374680 ZEB1P37275 1124 aaPredicted RBP26.45■■□□□ 1.82
RXRB-201ENST00000374680 CCER1Q8TC90 406 aaPredicted RBP26.39■■□□□ 1.82
RXRB-201ENST00000374680 CEP162Q5TB80 1403 aa26.3■■□□□ 1.8
RXRB-201ENST00000374680 WRNQ14191 1432 aaPredicted RBP eCLIP26.26■■□□□ 1.795e-6■■■■■ 29.2
RXRB-201ENST00000374680 ATAD2BQ9ULI0 1458 aa26.19■■□□□ 1.78
RXRB-201ENST00000374680 BAZ1BQ9UIG0 1483 aaKnown RBP26.17■■□□□ 1.78
RXRB-201ENST00000374680 TNIKQ9UKE5 1360 aa26.15■■□□□ 1.78
RXRB-201ENST00000374680 HNRNPUL2Q1KMD3 747 aaKnown RBP26.06■■□□□ 1.76
RXRB-201ENST00000374680 SYNJ1O43426 1573 aa26.04■■□□□ 1.76
RXRB-201ENST00000374680 GOLGA3Q08378 1498 aa26■■□□□ 1.75
RXRB-201ENST00000374680 EEA1Q15075 1411 aa25.99■■□□□ 1.75
RXRB-201ENST00000374680 PEG3Q9GZU2 1588 aa25.95■■□□□ 1.74
RXRB-201ENST00000374680 APLP2Q06481 763 aa25.91■■□□□ 1.74
RXRB-201ENST00000374680 CLIP1P30622 1438 aa25.87■■□□□ 1.73
RXRB-201ENST00000374680 RAPGEF2Q9Y4G8 1499 aa25.86■■□□□ 1.73
RXRB-201ENST00000374680 CEP164Q9UPV0 1460 aa25.84■■□□□ 1.73
RXRB-201ENST00000374680 DIEXFQ68CQ4 756 aaKnown RBP25.7■■□□□ 1.71
RXRB-201ENST00000374680 VPS8Q8N3P4 1428 aa25.6■■□□□ 1.69
RXRB-201ENST00000374680 SCAF1Q9H7N4 1312 aaKnown RBP25.6■■□□□ 1.69
RXRB-201ENST00000374680 KIF21BO75037 1637 aa25.59■■□□□ 1.69
RXRB-201ENST00000374680 NCAPD3P42695 1498 aa25.58■■□□□ 1.69
RXRB-201ENST00000374680 KANK4Q5T7N3 995 aaPredicted RBP25.57■■□□□ 1.68
RXRB-201ENST00000374680 TOP2BQ02880 1626 aa25.56■■□□□ 1.68
RXRB-201ENST00000374680 ITGAEP38570 1179 aa25.55■■□□□ 1.68
RXRB-201ENST00000374680 CUX1P39880 1505 aa25.51■■□□□ 1.67
RXRB-201ENST00000374680 ZNF316A6NFI3 1004 aaPredicted RBP25.44■■□□□ 1.66
RXRB-201ENST00000374680 NEUROD1Q13562 356 aa25.44■■□□□ 1.66
RXRB-201ENST00000374680 P3H3Q8IVL6 736 aa25.44■■□□□ 1.66
RXRB-201ENST00000374680 YTHDC1Q96MU7 727 aaKnown RBP25.44■■□□□ 1.66
RXRB-201ENST00000374680 ATP1B4Q9UN42 357 aaPredicted RBP25.44■■□□□ 1.66
RXRB-201ENST00000374680 KIF27Q86VH2 1401 aa25.44■■□□□ 1.66
RXRB-201ENST00000374680 CFTRP13569 1480 aa25.4■■□□□ 1.66
RXRB-201ENST00000374680 HMGXB3Q12766 1538 aa25.39■■□□□ 1.66
RXRB-201ENST00000374680 PRXQ9BXM0 1461 aa25.39■■□□□ 1.66
RXRB-201ENST00000374680 BIVM-ERCC5R4GMW8 1640 aa25.34■■□□□ 1.65
RXRB-201ENST00000374680 ARAP1Q96P48 1450 aa25.34■■□□□ 1.65
RXRB-201ENST00000374680 CUX2O14529 1486 aa25.33■■□□□ 1.65
RXRB-201ENST00000374680 ACIN1Q9UKV3 1341 aaKnown RBP25.31■■□□□ 1.64
RXRB-201ENST00000374680 CADPSQ9ULU8 1353 aa25.28■■□□□ 1.64
RXRB-201ENST00000374680 IGF1RP08069 1367 aa25.25■■□□□ 1.63
RXRB-201ENST00000374680 MIER1Q8N108 512 aa25.23■■□□□ 1.63
RXRB-201ENST00000374680 GTF3C3Q9Y5Q9 886 aa25.19■■□□□ 1.62
RXRB-201ENST00000374680 ERICH3Q5RHP9 1530 aa25.19■■□□□ 1.62
RXRB-201ENST00000374680 CARMIL1Q5VZK9 1371 aa25.18■■□□□ 1.62
RXRB-201ENST00000374680 CENPBP07199 599 aaPredicted RBP25.17■■□□□ 1.62
RXRB-201ENST00000374680 ARHGAP35Q9NRY4 1499 aa25.16■■□□□ 1.62
RXRB-201ENST00000374680 DNAJC5BQ9UF47 199 aa25.16■■□□□ 1.62
RXRB-201ENST00000374680 FGD5Q6ZNL6 1462 aa25.15■■□□□ 1.62
RXRB-201ENST00000374680 CC2D2AQ9P2K1 1620 aa25.11■■□□□ 1.61
RXRB-201ENST00000374680 FAM50AQ14320 339 aaKnown RBP25.1■■□□□ 1.61
RXRB-201ENST00000374680 NESP48681 1621 aa25.1■■□□□ 1.61
RXRB-201ENST00000374680 RAD54L2Q9Y4B4 1467 aa25.09■■□□□ 1.61
RXRB-201ENST00000374680 DHX57Q6P158 1386 aaKnown RBP25.06■■□□□ 1.6
RXRB-201ENST00000374680 FANCD2Q9BXW9 1451 aa25.04■■□□□ 1.6
RXRB-201ENST00000374680 CCNB3Q8WWL7 1395 aa25.02■■□□□ 1.6
RXRB-201ENST00000374680 TDRD9Q8NDG6 1382 aaKnown RBP24.91■■□□□ 1.58
RXRB-201ENST00000374680 FHOD3Q2V2M9 1422 aa24.91■■□□□ 1.58
RXRB-201ENST00000374680 RRBP1Q9P2E9 1410 aaKnown RBP24.89■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms