RNA–Protein interactions for RNA: ENST00000374338.4

LDLRAP1-201, Transcript of low density lipoprotein receptor adaptor protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDLRAP1, Length 2,940 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAP1-201ENST00000374338 NISCHQ9Y2I1 1504 aa35.11■■■■□ 3.21
LDLRAP1-201ENST00000374338 SHROOM4Q9ULL8 1493 aa30.74■■■□□ 2.51
LDLRAP1-201ENST00000374338 DCAF8L2P0C7V8 631 aa30.2■■■□□ 2.43
LDLRAP1-201ENST00000374338 SUPT5HO00267 1087 aaKnown RBP30.06■■■□□ 2.4
LDLRAP1-201ENST00000374338 ZCCHC6Q5VYS8 1495 aaKnown RBP29.59■■■□□ 2.33
LDLRAP1-201ENST00000374338 CCDC180Q9P1Z9 1646 aa29.5■■■□□ 2.31
LDLRAP1-201ENST00000374338 HRCP23327 699 aa28.95■■■□□ 2.22
LDLRAP1-201ENST00000374338 CHIC1Q5VXU3 224 aa28.77■■■□□ 2.2
LDLRAP1-201ENST00000374338 PELP1Q8IZL8 1130 aaKnown RBP28.73■■■□□ 2.19
LDLRAP1-201ENST00000374338 MYO15BQ96JP2 1530 aa28.67■■■□□ 2.18
LDLRAP1-201ENST00000374338 PPARGC1BQ86YN6 1023 aaKnown RBP28.59■■■□□ 2.17
LDLRAP1-201ENST00000374338 PCGF6Q9BYE7 350 aa28.46■■■□□ 2.15
LDLRAP1-201ENST00000374338 DCAF1Q9Y4B6 1507 aa28.37■■■□□ 2.13
LDLRAP1-201ENST00000374338 ABCC9O60706 1549 aa28.33■■■□□ 2.13
LDLRAP1-201ENST00000374338 SCRIBQ14160 1630 aa28.32■■■□□ 2.12
LDLRAP1-201ENST00000374338 LOC105371045A0A1W2PR82 267 aa28.3■■■□□ 2.12
LDLRAP1-201ENST00000374338 EHMT2Q96KQ7 1210 aa28.07■■■□□ 2.08
LDLRAP1-201ENST00000374338 FAM9AQ8IZU1 332 aaPredicted RBP27.94■■■□□ 2.06
LDLRAP1-201ENST00000374338 RSF1Q96T23 1441 aaPredicted RBP27.91■■■□□ 2.06
LDLRAP1-201ENST00000374338 MYT1Q01538 1121 aa27.76■■■□□ 2.03
LDLRAP1-201ENST00000374338 CECR2Q9BXF3 1484 aa27.76■■■□□ 2.03
LDLRAP1-201ENST00000374338 TRIM41Q8WV44 630 aa27.71■■■□□ 2.03
LDLRAP1-201ENST00000374338 SCAF1Q9H7N4 1312 aaKnown RBP27.69■■■□□ 2.02
LDLRAP1-201ENST00000374338 RB1CC1Q8TDY2 1594 aa27.66■■■□□ 2.02
LDLRAP1-201ENST00000374338 MROH2BQ7Z745 1585 aa27.51■■□□□ 1.99
LDLRAP1-201ENST00000374338 NACADO15069 1562 aa27.47■■□□□ 1.99
LDLRAP1-201ENST00000374338 WIZO95785 1651 aa27.36■■□□□ 1.97
LDLRAP1-201ENST00000374338 PABPN1Q86U42 306 aaKnown RBP eCLIP27.36■■□□□ 1.97
LDLRAP1-201ENST00000374338 TRIM26Q12899 539 aaPredicted RBP27.2■■□□□ 1.95
LDLRAP1-201ENST00000374338 TTBK1Q5TCY1 1321 aaPredicted RBP27.03■■□□□ 1.92
LDLRAP1-201ENST00000374338 ZEB1P37275 1124 aaPredicted RBP26.97■■□□□ 1.91
LDLRAP1-201ENST00000374338 BAZ1AQ9NRL2 1556 aaPredicted RBP26.89■■□□□ 1.9
LDLRAP1-201ENST00000374338 ABCC8Q09428 1581 aa26.87■■□□□ 1.89
LDLRAP1-201ENST00000374338 UNC13AQ9UPW8 1703 aa26.84■■□□□ 1.89
LDLRAP1-201ENST00000374338 ACIN1Q9UKV3 1341 aaKnown RBP26.84■■□□□ 1.89
LDLRAP1-201ENST00000374338 CCDC88BA6NC98 1476 aa26.79■■□□□ 1.88
LDLRAP1-201ENST00000374338 SMARCA4P51532 1647 aa26.75■■□□□ 1.87
LDLRAP1-201ENST00000374338 NEUROD1Q13562 356 aa26.74■■□□□ 1.87
LDLRAP1-201ENST00000374338 GTF3C3Q9Y5Q9 886 aa26.63■■□□□ 1.85
LDLRAP1-201ENST00000374338 TOP2AP11388 1531 aaKnown RBP26.63■■□□□ 1.85
LDLRAP1-201ENST00000374338 SOGA1O94964 1423 aa26.62■■□□□ 1.85
LDLRAP1-201ENST00000374338 SMARCA2P51531 1590 aa26.6■■□□□ 1.85
LDLRAP1-201ENST00000374338 RUSC2Q8N2Y8 1516 aa26.56■■□□□ 1.84
LDLRAP1-201ENST00000374338 RANGAP1P46060 587 aaPredicted RBP26.55■■□□□ 1.84
LDLRAP1-201ENST00000374338 EIF4G1Q04637 1599 aaKnown RBP26.55■■□□□ 1.84
LDLRAP1-201ENST00000374338 BICRAQ9NZM4 1560 aa26.55■■□□□ 1.84
LDLRAP1-201ENST00000374338 UBTFP17480 764 aaKnown RBP26.55■■□□□ 1.84
LDLRAP1-201ENST00000374338 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.52■■□□□ 1.84
LDLRAP1-201ENST00000374338 CENPBP07199 599 aaPredicted RBP26.37■■□□□ 1.81
LDLRAP1-201ENST00000374338 CSRNP3Q8WYN3 585 aa26.37■■□□□ 1.81
LDLRAP1-201ENST00000374338 CCER1Q8TC90 406 aaPredicted RBP26.28■■□□□ 1.8
LDLRAP1-201ENST00000374338 CEP162Q5TB80 1403 aa26.27■■□□□ 1.8
LDLRAP1-201ENST00000374338 WRNQ14191 1432 aaPredicted RBP eCLIP26.23■■□□□ 1.79
LDLRAP1-201ENST00000374338 ATAD2BQ9ULI0 1458 aa26.2■■□□□ 1.78
LDLRAP1-201ENST00000374338 DIEXFQ68CQ4 756 aaKnown RBP26.18■■□□□ 1.78
LDLRAP1-201ENST00000374338 BAZ1BQ9UIG0 1483 aaKnown RBP26.17■■□□□ 1.78
LDLRAP1-201ENST00000374338 SYNJ1O43426 1573 aa26.09■■□□□ 1.77
LDLRAP1-201ENST00000374338 YTHDC1Q96MU7 727 aaKnown RBP26.07■■□□□ 1.76
LDLRAP1-201ENST00000374338 TNIKQ9UKE5 1360 aa26.06■■□□□ 1.76
LDLRAP1-201ENST00000374338 HNRNPUL2Q1KMD3 747 aaKnown RBP26.01■■□□□ 1.75
LDLRAP1-201ENST00000374338 PEG3Q9GZU2 1588 aa25.95■■□□□ 1.74
LDLRAP1-201ENST00000374338 GOLGA3Q08378 1498 aa25.94■■□□□ 1.74
LDLRAP1-201ENST00000374338 BCL11AQ9H165 835 aa25.93■■□□□ 1.74
LDLRAP1-201ENST00000374338 RAPGEF2Q9Y4G8 1499 aa25.88■■□□□ 1.73
LDLRAP1-201ENST00000374338 EEA1Q15075 1411 aa25.86■■□□□ 1.73
LDLRAP1-201ENST00000374338 CLIP1P30622 1438 aa25.81■■□□□ 1.72
LDLRAP1-201ENST00000374338 CEP164Q9UPV0 1460 aa25.77■■□□□ 1.72
LDLRAP1-201ENST00000374338 APLP2Q06481 763 aa25.75■■□□□ 1.71
LDLRAP1-201ENST00000374338 MIER1Q8N108 512 aa25.6■■□□□ 1.69
LDLRAP1-201ENST00000374338 ANP32EQ9BTT0 268 aa25.6■■□□□ 1.69
LDLRAP1-201ENST00000374338 KANK4Q5T7N3 995 aaPredicted RBP25.57■■□□□ 1.68
LDLRAP1-201ENST00000374338 TOP2BQ02880 1626 aa25.56■■□□□ 1.68
LDLRAP1-201ENST00000374338 ZNF316A6NFI3 1004 aaPredicted RBP25.56■■□□□ 1.68
LDLRAP1-201ENST00000374338 KIF21BO75037 1637 aa25.56■■□□□ 1.68
LDLRAP1-201ENST00000374338 NCAPD3P42695 1498 aa25.56■■□□□ 1.68
LDLRAP1-201ENST00000374338 CUX1P39880 1505 aa25.55■■□□□ 1.68
LDLRAP1-201ENST00000374338 VPS8Q8N3P4 1428 aa25.54■■□□□ 1.68
LDLRAP1-201ENST00000374338 ITGAEP38570 1179 aa25.53■■□□□ 1.68
LDLRAP1-201ENST00000374338 P3H3Q8IVL6 736 aa25.46■■□□□ 1.67
LDLRAP1-201ENST00000374338 ATP1B4Q9UN42 357 aaPredicted RBP25.41■■□□□ 1.66
LDLRAP1-201ENST00000374338 HMGXB3Q12766 1538 aa25.39■■□□□ 1.65
LDLRAP1-201ENST00000374338 CFTRP13569 1480 aa25.38■■□□□ 1.65
LDLRAP1-201ENST00000374338 KIF27Q86VH2 1401 aa25.37■■□□□ 1.65
LDLRAP1-201ENST00000374338 PRXQ9BXM0 1461 aa25.36■■□□□ 1.65
LDLRAP1-201ENST00000374338 BIVM-ERCC5R4GMW8 1640 aa25.36■■□□□ 1.65
LDLRAP1-201ENST00000374338 ARAP1Q96P48 1450 aa25.35■■□□□ 1.65
LDLRAP1-201ENST00000374338 CUX2O14529 1486 aa25.32■■□□□ 1.64
LDLRAP1-201ENST00000374338 DNAJC5BQ9UF47 199 aa25.32■■□□□ 1.64
LDLRAP1-201ENST00000374338 TSHZ2Q9NRE2 1034 aa25.29■■□□□ 1.64
LDLRAP1-201ENST00000374338 PRKCSHP14314 528 aaPredicted RBP25.27■■□□□ 1.64
LDLRAP1-201ENST00000374338 CADPSQ9ULU8 1353 aa25.25■■□□□ 1.63
LDLRAP1-201ENST00000374338 SUPT16HQ9Y5B9 1047 aaKnown RBP25.23■■□□□ 1.63
LDLRAP1-201ENST00000374338 IGF1RP08069 1367 aa25.22■■□□□ 1.63
LDLRAP1-201ENST00000374338 NESP48681 1621 aa25.2■■□□□ 1.62
LDLRAP1-201ENST00000374338 CC2D2AQ9P2K1 1620 aa25.19■■□□□ 1.62
LDLRAP1-201ENST00000374338 FGD5Q6ZNL6 1462 aa25.17■■□□□ 1.62
LDLRAP1-201ENST00000374338 ARHGAP35Q9NRY4 1499 aa25.16■■□□□ 1.62
LDLRAP1-201ENST00000374338 ERICH3Q5RHP9 1530 aa25.15■■□□□ 1.62
LDLRAP1-201ENST00000374338 RAD54L2Q9Y4B4 1467 aa25.14■■□□□ 1.61
LDLRAP1-201ENST00000374338 CLSPNQ9HAW4 1339 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms