RNA–Protein interactions for RNA: ENST00000374253.9

CNKSR1-202, Transcript of connector enhancer of kinase suppressor of Ras 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CNKSR1, Length 2,538 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR1-202ENST00000374253 NISCHQ9Y2I1 1504 aa34.18■■■■□ 3.06
CNKSR1-202ENST00000374253 CCDC180Q9P1Z9 1646 aa29.17■■■□□ 2.26
CNKSR1-202ENST00000374253 SHROOM4Q9ULL8 1493 aa29.05■■■□□ 2.24
CNKSR1-202ENST00000374253 ZCCHC6Q5VYS8 1495 aaKnown RBP28.81■■■□□ 2.2
CNKSR1-202ENST00000374253 DCAF8L2P0C7V8 631 aa28.7■■■□□ 2.19
CNKSR1-202ENST00000374253 SUPT5HO00267 1087 aaKnown RBP28.28■■■□□ 2.12
CNKSR1-202ENST00000374253 DCAF1Q9Y4B6 1507 aa27.94■■■□□ 2.06
CNKSR1-202ENST00000374253 ABCC9O60706 1549 aa27.58■■■□□ 2.01
CNKSR1-202ENST00000374253 SCRIBQ14160 1630 aa27.44■■□□□ 1.98
CNKSR1-202ENST00000374253 MYO15BQ96JP2 1530 aa27.26■■□□□ 1.95
CNKSR1-202ENST00000374253 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
CNKSR1-202ENST00000374253 NACADO15069 1562 aa27.09■■□□□ 1.93
CNKSR1-202ENST00000374253 RSF1Q96T23 1441 aaPredicted RBP26.92■■□□□ 1.9
CNKSR1-202ENST00000374253 RB1CC1Q8TDY2 1594 aa26.77■■□□□ 1.88
CNKSR1-202ENST00000374253 CECR2Q9BXF3 1484 aa26.77■■□□□ 1.88
CNKSR1-202ENST00000374253 MROH2BQ7Z745 1585 aa26.61■■□□□ 1.85
CNKSR1-202ENST00000374253 LOC105371045A0A1W2PR82 267 aa26.46■■□□□ 1.83
CNKSR1-202ENST00000374253 WIZO95785 1651 aa26.45■■□□□ 1.83
CNKSR1-202ENST00000374253 UNC13AQ9UPW8 1703 aa26.41■■□□□ 1.82
CNKSR1-202ENST00000374253 PABPN1Q86U42 306 aaKnown RBP eCLIP26.36■■□□□ 1.81
CNKSR1-202ENST00000374253 TRIM41Q8WV44 630 aa26.3■■□□□ 1.8
CNKSR1-202ENST00000374253 BAZ1AQ9NRL2 1556 aaPredicted RBP26.26■■□□□ 1.79
CNKSR1-202ENST00000374253 FAM9AQ8IZU1 332 aaPredicted RBP26.19■■□□□ 1.78
CNKSR1-202ENST00000374253 SMARCA4P51532 1647 aa26.12■■□□□ 1.77
CNKSR1-202ENST00000374253 BICRAQ9NZM4 1560 aa26.09■■□□□ 1.77
CNKSR1-202ENST00000374253 EHMT2Q96KQ7 1210 aa26.07■■□□□ 1.76
CNKSR1-202ENST00000374253 PCGF6Q9BYE7 350 aa25.99■■□□□ 1.75
CNKSR1-202ENST00000374253 TOP2AP11388 1531 aaKnown RBP25.96■■□□□ 1.75
CNKSR1-202ENST00000374253 CCDC88BA6NC98 1476 aa25.9■■□□□ 1.74
CNKSR1-202ENST00000374253 SMARCA2P51531 1590 aa25.83■■□□□ 1.73
CNKSR1-202ENST00000374253 EIF4G1Q04637 1599 aaKnown RBP25.82■■□□□ 1.72
CNKSR1-202ENST00000374253 ABCC8Q09428 1581 aa25.75■■□□□ 1.71
CNKSR1-202ENST00000374253 HRCP23327 699 aa25.59■■□□□ 1.69
CNKSR1-202ENST00000374253 ATAD2BQ9ULI0 1458 aa25.57■■□□□ 1.68
CNKSR1-202ENST00000374253 PEG3Q9GZU2 1588 aa25.56■■□□□ 1.68
CNKSR1-202ENST00000374253 BAZ1BQ9UIG0 1483 aaKnown RBP25.5■■□□□ 1.67
CNKSR1-202ENST00000374253 TRIM26Q12899 539 aaPredicted RBP25.48■■□□□ 1.67
CNKSR1-202ENST00000374253 SOGA1O94964 1423 aa25.42■■□□□ 1.66
CNKSR1-202ENST00000374253 PPARGC1BQ86YN6 1023 aaKnown RBP25.38■■□□□ 1.65
CNKSR1-202ENST00000374253 RUSC2Q8N2Y8 1516 aa25.33■■□□□ 1.65
CNKSR1-202ENST00000374253 WRNQ14191 1432 aaPredicted RBP eCLIP25.31■■□□□ 1.64
CNKSR1-202ENST00000374253 SYNJ1O43426 1573 aa25.21■■□□□ 1.63
CNKSR1-202ENST00000374253 CSRNP3Q8WYN3 585 aa25.2■■□□□ 1.62
CNKSR1-202ENST00000374253 UBTFP17480 764 aaKnown RBP25.15■■□□□ 1.62
CNKSR1-202ENST00000374253 NCAPD3P42695 1498 aa25.1■■□□□ 1.61
CNKSR1-202ENST00000374253 TTBK1Q5TCY1 1321 aaPredicted RBP25.1■■□□□ 1.61
CNKSR1-202ENST00000374253 CEP162Q5TB80 1403 aa25.07■■□□□ 1.6
CNKSR1-202ENST00000374253 EEA1Q15075 1411 aa25.06■■□□□ 1.6
CNKSR1-202ENST00000374253 HMGXB3Q12766 1538 aa25.03■■□□□ 1.6
CNKSR1-202ENST00000374253 TNIKQ9UKE5 1360 aa25■■□□□ 1.59
CNKSR1-202ENST00000374253 GOLGA3Q08378 1498 aa24.95■■□□□ 1.58
CNKSR1-202ENST00000374253 RANGAP1P46060 587 aaPredicted RBP24.89■■□□□ 1.58
CNKSR1-202ENST00000374253 TOP2BQ02880 1626 aa24.88■■□□□ 1.57
CNKSR1-202ENST00000374253 CEP164Q9UPV0 1460 aa24.84■■□□□ 1.57
CNKSR1-202ENST00000374253 CFTRP13569 1480 aa24.8■■□□□ 1.56
CNKSR1-202ENST00000374253 RAPGEF2Q9Y4G8 1499 aa24.8■■□□□ 1.56
CNKSR1-202ENST00000374253 CUX1P39880 1505 aa24.79■■□□□ 1.56
CNKSR1-202ENST00000374253 KIF21BO75037 1637 aa24.77■■□□□ 1.56
CNKSR1-202ENST00000374253 CC2D2AQ9P2K1 1620 aa24.77■■□□□ 1.56
CNKSR1-202ENST00000374253 BIVM-ERCC5R4GMW8 1640 aa24.77■■□□□ 1.56
CNKSR1-202ENST00000374253 CLIP1P30622 1438 aa24.69■■□□□ 1.54
CNKSR1-202ENST00000374253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.69■■□□□ 1.54
CNKSR1-202ENST00000374253 ZEB1P37275 1124 aaPredicted RBP24.64■■□□□ 1.54
CNKSR1-202ENST00000374253 CADPSQ9ULU8 1353 aa24.64■■□□□ 1.53
CNKSR1-202ENST00000374253 KIF27Q86VH2 1401 aa24.55■■□□□ 1.52
CNKSR1-202ENST00000374253 CCER1Q8TC90 406 aaPredicted RBP24.54■■□□□ 1.52
CNKSR1-202ENST00000374253 PRXQ9BXM0 1461 aa24.53■■□□□ 1.52
CNKSR1-202ENST00000374253 PRDM2Q13029 1718 aa24.51■■□□□ 1.51
CNKSR1-202ENST00000374253 VPS8Q8N3P4 1428 aa24.49■■□□□ 1.51
CNKSR1-202ENST00000374253 NESP48681 1621 aa24.46■■□□□ 1.51
CNKSR1-202ENST00000374253 CUX2O14529 1486 aa24.45■■□□□ 1.5
CNKSR1-202ENST00000374253 ERICH3Q5RHP9 1530 aa24.44■■□□□ 1.5
CNKSR1-202ENST00000374253 APLP2Q06481 763 aa24.43■■□□□ 1.5
CNKSR1-202ENST00000374253 DNAJC5BQ9UF47 199 aa24.43■■□□□ 1.5
CNKSR1-202ENST00000374253 FGD5Q6ZNL6 1462 aa24.42■■□□□ 1.5
CNKSR1-202ENST00000374253 FANCD2Q9BXW9 1451 aa24.42■■□□□ 1.5
CNKSR1-202ENST00000374253 HNRNPUL2Q1KMD3 747 aaKnown RBP24.37■■□□□ 1.49
CNKSR1-202ENST00000374253 IGF1RP08069 1367 aa24.34■■□□□ 1.49
CNKSR1-202ENST00000374253 ARAP1Q96P48 1450 aa24.33■■□□□ 1.49
CNKSR1-202ENST00000374253 RAD54L2Q9Y4B4 1467 aa24.28■■□□□ 1.48
CNKSR1-202ENST00000374253 CARMIL1Q5VZK9 1371 aa24.24■■□□□ 1.47
CNKSR1-202ENST00000374253 KANK4Q5T7N3 995 aaPredicted RBP24.23■■□□□ 1.47
CNKSR1-202ENST00000374253 TOPBP1Q92547 1522 aa24.2■■□□□ 1.47
CNKSR1-202ENST00000374253 ARHGAP35Q9NRY4 1499 aa24.19■■□□□ 1.46
CNKSR1-202ENST00000374253 DNMBPQ6XZF7 1577 aa24.18■■□□□ 1.46
CNKSR1-202ENST00000374253 POLA1P09884 1462 aaPredicted RBP24.18■■□□□ 1.46
CNKSR1-202ENST00000374253 P3H3Q8IVL6 736 aa24.12■■□□□ 1.45
CNKSR1-202ENST00000374253 URB2Q14146 1524 aaKnown RBP24.09■■□□□ 1.45
CNKSR1-202ENST00000374253 LAMC3Q9Y6N6 1575 aa24.08■■□□□ 1.45
CNKSR1-202ENST00000374253 ABCA10Q8WWZ4 1543 aa24.06■■□□□ 1.44
CNKSR1-202ENST00000374253 TDRD9Q8NDG6 1382 aaKnown RBP24.02■■□□□ 1.44
CNKSR1-202ENST00000374253 ATP1B4Q9UN42 357 aaPredicted RBP24■■□□□ 1.43
CNKSR1-202ENST00000374253 PDS5BQ9NTI5 1447 aa23.99■■□□□ 1.43
CNKSR1-202ENST00000374253 KIF21AQ7Z4S6 1674 aa23.96■■□□□ 1.43
CNKSR1-202ENST00000374253 ITGAEP38570 1179 aa23.94■■□□□ 1.42
CNKSR1-202ENST00000374253 FHOD3Q2V2M9 1422 aa23.9■■□□□ 1.42
CNKSR1-202ENST00000374253 WDR97A6NE52 1622 aa23.85■■□□□ 1.41
CNKSR1-202ENST00000374253 GAPVD1Q14C86 1478 aa23.84■■□□□ 1.41
CNKSR1-202ENST00000374253 CUL7Q14999 1698 aa23.83■■□□□ 1.41
CNKSR1-202ENST00000374253 RRBP1Q9P2E9 1410 aaKnown RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms