RNA–Protein interactions for RNA: ENST00000373839.7

PHACTR4-202, Transcript of phosphatase and actin regulator 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHACTR4, Length 6,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHACTR4-202ENST00000373839 DCAF8L2P0C7V8 631 aa19.21■□□□□ 0.67
PHACTR4-202ENST00000373839 NISCHQ9Y2I1 1504 aa18.2■□□□□ 0.5
PHACTR4-202ENST00000373839 SUPT5HO00267 1087 aaKnown RBP18.02■□□□□ 0.48
PHACTR4-202ENST00000373839 FAM9AQ8IZU1 332 aaPredicted RBP17.65■□□□□ 0.42
PHACTR4-202ENST00000373839 SHROOM4Q9ULL8 1493 aa17.6■□□□□ 0.41
PHACTR4-202ENST00000373839 APLP2Q06481 763 aa17.58■□□□□ 0.4
PHACTR4-202ENST00000373839 PELP1Q8IZL8 1130 aaKnown RBP17.5■□□□□ 0.39
PHACTR4-202ENST00000373839 EHMT2Q96KQ7 1210 aa17.28■□□□□ 0.36
PHACTR4-202ENST00000373839 TRIM41Q8WV44 630 aa16.85■□□□□ 0.29
PHACTR4-202ENST00000373839 ZEB1P37275 1124 aaPredicted RBP16.79■□□□□ 0.28
PHACTR4-202ENST00000373839 ATP1B4Q9UN42 357 aaPredicted RBP16.77■□□□□ 0.28
PHACTR4-202ENST00000373839 CCER1Q8TC90 406 aaPredicted RBP16.72■□□□□ 0.27
PHACTR4-202ENST00000373839 TTBK1Q5TCY1 1321 aaPredicted RBP16.72■□□□□ 0.27
PHACTR4-202ENST00000373839 UBTFP17480 764 aaKnown RBP16.71■□□□□ 0.27
PHACTR4-202ENST00000373839 RANGAP1P46060 587 aaPredicted RBP16.71■□□□□ 0.27
PHACTR4-202ENST00000373839 PCGF6Q9BYE7 350 aa16.68■□□□□ 0.26
PHACTR4-202ENST00000373839 CENPBP07199 599 aaPredicted RBP16.66■□□□□ 0.26
PHACTR4-202ENST00000373839 ERICH6Q7L0X2 663 aa16.56■□□□□ 0.24
PHACTR4-202ENST00000373839 NEFLP07196 543 aa16.45■□□□□ 0.22
PHACTR4-202ENST00000373839 MYT1LQ9UL68 1186 aa16.34■□□□□ 0.21
PHACTR4-202ENST00000373839 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
PHACTR4-202ENST00000373839 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
PHACTR4-202ENST00000373839 TRIM26Q12899 539 aaPredicted RBP16.12■□□□□ 0.17
PHACTR4-202ENST00000373839 ITGAEP38570 1179 aa16.04■□□□□ 0.16
PHACTR4-202ENST00000373839 DAXXQ9UER7 740 aaPredicted RBP16.01■□□□□ 0.15
PHACTR4-202ENST00000373839 YTHDC1Q96MU7 727 aaKnown RBP16■□□□□ 0.15
PHACTR4-202ENST00000373839 POLR3GLQ9BT43 218 aa16■□□□□ 0.15
PHACTR4-202ENST00000373839 PPARGC1BQ86YN6 1023 aaKnown RBP15.95■□□□□ 0.14
PHACTR4-202ENST00000373839 MYT1Q01538 1121 aa15.92■□□□□ 0.14
PHACTR4-202ENST00000373839 CHIC1Q5VXU3 224 aa15.84■□□□□ 0.13
PHACTR4-202ENST00000373839 SLC4A1APQ9BWU0 796 aaKnown RBP15.84■□□□□ 0.13
PHACTR4-202ENST00000373839 ABCC9O60706 1549 aa15.82■□□□□ 0.12
PHACTR4-202ENST00000373839 PABPN1Q86U42 306 aaKnown RBP eCLIP15.76■□□□□ 0.11
PHACTR4-202ENST00000373839 HRCP23327 699 aa15.75■□□□□ 0.11
PHACTR4-202ENST00000373839 FAM50AQ14320 339 aaKnown RBP15.74■□□□□ 0.11
PHACTR4-202ENST00000373839 TRIM52Q96A61 297 aa15.73■□□□□ 0.11
PHACTR4-202ENST00000373839 LOC105371045A0A1W2PR82 267 aa15.69■□□□□ 0.1
PHACTR4-202ENST00000373839 CLSPNQ9HAW4 1339 aa15.64■□□□□ 0.09
PHACTR4-202ENST00000373839 CNGB1Q14028 1251 aaPredicted RBP15.63■□□□□ 0.09
PHACTR4-202ENST00000373839 FBLN2P98095 1184 aa15.63■□□□□ 0.09
PHACTR4-202ENST00000373839 ZNF316A6NFI3 1004 aaPredicted RBP15.58■□□□□ 0.08
PHACTR4-202ENST00000373839 ZBTB47Q9UFB7 747 aaPredicted RBP15.56■□□□□ 0.08
PHACTR4-202ENST00000373839 CDK11AQ9UQ88 783 aaPredicted RBP15.55■□□□□ 0.08
PHACTR4-202ENST00000373839 NEFMP07197 916 aa15.53■□□□□ 0.08
PHACTR4-202ENST00000373839 RTL5Q5HYW3 569 aaPredicted RBP15.5■□□□□ 0.07
PHACTR4-202ENST00000373839 NEUROD1Q13562 356 aa15.47■□□□□ 0.07
PHACTR4-202ENST00000373839 DIEXFQ68CQ4 756 aaKnown RBP15.47■□□□□ 0.07
PHACTR4-202ENST00000373839 ANP32CO43423 234 aa15.46■□□□□ 0.07
PHACTR4-202ENST00000373839 ZNF326Q5BKZ1 582 aaKnown RBP15.45■□□□□ 0.06
PHACTR4-202ENST00000373839 ESF1Q9H501 851 aaKnown RBP15.45■□□□□ 0.06
PHACTR4-202ENST00000373839 BCANQ96GW7 911 aa15.44■□□□□ 0.06
PHACTR4-202ENST00000373839 CSRNP3Q8WYN3 585 aa15.39■□□□□ 0.05
PHACTR4-202ENST00000373839 NPM1P06748 294 aaKnown RBP eCLIP15.39■□□□□ 0.05
PHACTR4-202ENST00000373839 CANXP27824 592 aaKnown RBP15.34■□□□□ 0.05
PHACTR4-202ENST00000373839 SLC24A1O60721 1099 aa15.3■□□□□ 0.04
PHACTR4-202ENST00000373839 ZNF777Q9ULD5 760 aaPredicted RBP15.3■□□□□ 0.04
PHACTR4-202ENST00000373839 P3H3Q8IVL6 736 aa15.27■□□□□ 0.03
PHACTR4-202ENST00000373839 STAG3Q9UJ98 1225 aa15.26■□□□□ 0.03
PHACTR4-202ENST00000373839 ARID3CA6NKF2 412 aa15.21■□□□□ 0.03
PHACTR4-202ENST00000373839 SCRIBQ14160 1630 aa15.19■□□□□ 0.02
PHACTR4-202ENST00000373839 CHGAP10645 457 aaKnown RBP15.14■□□□□ 0.01
PHACTR4-202ENST00000373839 TONSLQ96HA7 1378 aa15.14■□□□□ 0.01
PHACTR4-202ENST00000373839 TSPY4P0CV99 314 aa15.09■□□□□ 0.01
PHACTR4-202ENST00000373839 TSPY10P0CW01 314 aa15.09■□□□□ 0.01
PHACTR4-202ENST00000373839 ACIN1Q9UKV3 1341 aaKnown RBP15.08■□□□□ 0
PHACTR4-202ENST00000373839 CHMP7Q8WUX9 453 aaPredicted RBP15.04■□□□□ -0
PHACTR4-202ENST00000373839 ANP32AP39687 249 aaKnown RBP15.02■□□□□ -0
PHACTR4-202ENST00000373839 ZCCHC6Q5VYS8 1495 aaKnown RBP15.01□□□□□ -0.01
PHACTR4-202ENST00000373839 BCL11AQ9H165 835 aa15□□□□□ -0.01
PHACTR4-202ENST00000373839 UPF2Q9HAU5 1272 aaKnown RBP14.98□□□□□ -0.01
PHACTR4-202ENST00000373839 MTUS2Q5JR59 1369 aa14.98□□□□□ -0.01
PHACTR4-202ENST00000373839 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.97□□□□□ -0.01
PHACTR4-202ENST00000373839 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.94□□□□□ -0.021e-6■■■□□ 18.7
PHACTR4-202ENST00000373839 GTF3C3Q9Y5Q9 886 aa14.93□□□□□ -0.02
PHACTR4-202ENST00000373839 PLPPR3Q6T4P5 718 aa14.93□□□□□ -0.02
PHACTR4-202ENST00000373839 ANP32BQ92688 251 aaKnown RBP14.93□□□□□ -0.02
PHACTR4-202ENST00000373839 RB1CC1Q8TDY2 1594 aa14.92□□□□□ -0.02
PHACTR4-202ENST00000373839 HSP90AA1P07900 732 aaKnown RBP14.91□□□□□ -0.02
PHACTR4-202ENST00000373839 CCDC180Q9P1Z9 1646 aa14.91□□□□□ -0.02
PHACTR4-202ENST00000373839 NPM2Q86SE8 214 aaKnown RBP14.9□□□□□ -0.02
PHACTR4-202ENST00000373839 RSF1Q96T23 1441 aaPredicted RBP14.9□□□□□ -0.02
PHACTR4-202ENST00000373839 WDR43Q15061 677 aaKnown RBP eCLIP14.9□□□□□ -0.02
PHACTR4-202ENST00000373839 EEA1Q15075 1411 aa14.88□□□□□ -0.03
PHACTR4-202ENST00000373839 PLEKHD1A6NEE1 506 aa14.88□□□□□ -0.03
PHACTR4-202ENST00000373839 TMC1Q8TDI8 760 aa14.88□□□□□ -0.03
PHACTR4-202ENST00000373839 CHIC2Q9UKJ5 165 aa14.87□□□□□ -0.03
PHACTR4-202ENST00000373839 PPP1R15AO75807 674 aaPredicted RBP14.86□□□□□ -0.03
PHACTR4-202ENST00000373839 HNRNPUQ00839 825 aaKnown RBP eCLIP14.83□□□□□ -0.03
PHACTR4-202ENST00000373839 MYH16Q9H6N6 1097 aa14.81□□□□□ -0.04
PHACTR4-202ENST00000373839 DCAF1Q9Y4B6 1507 aa14.81□□□□□ -0.04
PHACTR4-202ENST00000373839 CLIP1P30622 1438 aa14.81□□□□□ -0.04
PHACTR4-202ENST00000373839 CDCA8Q53HL2 280 aa14.79□□□□□ -0.04
PHACTR4-202ENST00000373839 SCAF1Q9H7N4 1312 aaKnown RBP14.79□□□□□ -0.04
PHACTR4-202ENST00000373839 FAM9BQ8IZU0 186 aa14.79□□□□□ -0.04
PHACTR4-202ENST00000373839 DDX10Q13206 875 aaKnown RBP14.77□□□□□ -0.05
PHACTR4-202ENST00000373839 KDM2AQ9Y2K7 1162 aa14.77□□□□□ -0.05
PHACTR4-202ENST00000373839 C14orf37Q86TY3 774 aa14.75□□□□□ -0.05
PHACTR4-202ENST00000373839 EIF4G2P78344 907 aaKnown RBP eCLIP14.75□□□□□ -0.05
PHACTR4-202ENST00000373839 KCNH8Q96L42 1107 aa14.73□□□□□ -0.05
PHACTR4-202ENST00000373839 MRS2Q9HD23 443 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms