RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 AEBP2Q6ZN18 517 aaPredicted RBP13.9□□□□□ -0.18
MCF2-202ENST00000370573 CHIC1Q5VXU3 224 aa13.37□□□□□ -0.27
MCF2-202ENST00000370573 PHF23Q9BUL5 403 aaPredicted RBP11.8□□□□□ -0.52
MCF2-202ENST00000370573 SENP3Q9H4L4 574 aaPredicted RBP11.75□□□□□ -0.53
MCF2-202ENST00000370573 FOXD1Q16676 465 aa10.98□□□□□ -0.65
MCF2-202ENST00000370573 PLPPR3Q6T4P5 718 aa10.79□□□□□ -0.68
MCF2-202ENST00000370573 PPP6R1Q9UPN7 881 aa10.49□□□□□ -0.73
MCF2-202ENST00000370573 ADRA2BP18089 450 aa10.48□□□□□ -0.73
MCF2-202ENST00000370573 PIAS4Q8N2W9 510 aaPredicted RBP10.33□□□□□ -0.76
MCF2-202ENST00000370573 MSH5O43196 834 aa10.12□□□□□ -0.79
MCF2-202ENST00000370573 POTEDQ86YR6 584 aa9.94□□□□□ -0.82
MCF2-202ENST00000370573 MAPK8IP2Q13387 824 aaPredicted RBP9.57□□□□□ -0.88
MCF2-202ENST00000370573 PPP4R3CPQ6ZMV5 832 aa9.52□□□□□ -0.89
MCF2-202ENST00000370573 SCAF1Q9H7N4 1312 aaKnown RBP9.49□□□□□ -0.89
MCF2-202ENST00000370573 DMRT2Q9Y5R5 561 aa9.36□□□□□ -0.91
MCF2-202ENST00000370573 CNKSR2Q8WXI2 1034 aa9.25□□□□□ -0.93
MCF2-202ENST00000370573 NCBP3Q53F19 620 aaKnown RBP9.18□□□□□ -0.94
MCF2-202ENST00000370573 KCNA4P22459 653 aa9.17□□□□□ -0.94
MCF2-202ENST00000370573 NPM3O75607 178 aaKnown RBP9.1□□□□□ -0.95
MCF2-202ENST00000370573 HOXD11P31277 338 aaPredicted RBP9.1□□□□□ -0.95
MCF2-202ENST00000370573 RNF216Q9NWF9 866 aaPredicted RBP9.1□□□□□ -0.95
MCF2-202ENST00000370573 DCAF8L1A6NGE4 600 aa9.08□□□□□ -0.96
MCF2-202ENST00000370573 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.73□□□□□ -1.01
MCF2-202ENST00000370573 DNAJC5BQ9UF47 199 aa8.7□□□□□ -1.02
MCF2-202ENST00000370573 RNF39Q9H2S5 420 aa8.68□□□□□ -1.02
MCF2-202ENST00000370573 SLC4A1APQ9BWU0 796 aaKnown RBP8.68□□□□□ -1.02
MCF2-202ENST00000370573 SLC4A2P04920 1241 aa8.63□□□□□ -1.03
MCF2-202ENST00000370573 CACNB1Q02641 598 aaPredicted RBP8.61□□□□□ -1.03
MCF2-202ENST00000370573 U3KPZ7 1027 aaPredicted RBP8.56□□□□□ -1.04
MCF2-202ENST00000370573 C1QBPQ07021 282 aaKnown RBP8.55□□□□□ -1.04
MCF2-202ENST00000370573 ZBTB22O15209 634 aa8.44□□□□□ -1.06
MCF2-202ENST00000370573 FOXD4L1Q9NU39 408 aa8.42□□□□□ -1.06
MCF2-202ENST00000370573 SPINK5Q9NQ38 1064 aaPredicted RBP8.41□□□□□ -1.06
MCF2-202ENST00000370573 CAPN15O75808 1086 aa8.37□□□□□ -1.07
MCF2-202ENST00000370573 MYCNP04198 464 aaPredicted RBP8.37□□□□□ -1.07
MCF2-202ENST00000370573 EHMT2Q96KQ7 1210 aa8.34□□□□□ -1.07
MCF2-202ENST00000370573 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.33□□□□□ -1.08
MCF2-202ENST00000370573 HNRNPUL2Q1KMD3 747 aaKnown RBP8.33□□□□□ -1.08
MCF2-202ENST00000370573 TRHP20396 242 aaPredicted RBP8.31□□□□□ -1.08
MCF2-202ENST00000370573 SAMD1Q6SPF0 538 aaPredicted RBP8.31□□□□□ -1.08
MCF2-202ENST00000370573 CSRNP3Q8WYN3 585 aa8.26□□□□□ -1.09
MCF2-202ENST00000370573 APLP2Q06481 763 aa8.25□□□□□ -1.09
MCF2-202ENST00000370573 ATF5Q9Y2D1 282 aaPredicted RBP8.24□□□□□ -1.09
MCF2-202ENST00000370573 ABCB7O75027 752 aa8.23□□□□□ -1.09
MCF2-202ENST00000370573 DSG3P32926 999 aa8.23□□□□□ -1.09
MCF2-202ENST00000370573 ZNF219Q9P2Y4 722 aaPredicted RBP8.21□□□□□ -1.09
MCF2-202ENST00000370573 NISCHQ9Y2I1 1504 aa8.15□□□□□ -1.1
MCF2-202ENST00000370573 POLA2Q14181 598 aa8.13□□□□□ -1.11
MCF2-202ENST00000370573 ATXN8OSP0DMR3 200 aa8.09□□□□□ -1.11
MCF2-202ENST00000370573 ZBTB12Q9Y330 459 aaPredicted RBP7.88□□□□□ -1.15
MCF2-202ENST00000370573 OSCARQ8IYS5 282 aa7.85□□□□□ -1.15
MCF2-202ENST00000370573 MKRN4PQ13434 485 aaPredicted RBP7.84□□□□□ -1.15
MCF2-202ENST00000370573 FBLN2P98095 1184 aa7.83□□□□□ -1.16
MCF2-202ENST00000370573 RBM42Q9BTD8 480 aaKnown RBP7.79□□□□□ -1.16
MCF2-202ENST00000370573 POTEHQ6S545 545 aa7.71□□□□□ -1.17
MCF2-202ENST00000370573 ZNF692Q9BU19 519 aaPredicted RBP7.69□□□□□ -1.18
MCF2-202ENST00000370573 SPDYE2BA6NHP3 402 aa7.68□□□□□ -1.18
MCF2-202ENST00000370573 SPDYE6P0CI01 402 aa7.68□□□□□ -1.18
MCF2-202ENST00000370573 SPDYE2Q495Y8 402 aa7.68□□□□□ -1.18
MCF2-202ENST00000370573 AKT1S1Q96B36 256 aa7.68□□□□□ -1.18
MCF2-202ENST00000370573 REM2Q8IYK8 340 aaPredicted RBP7.65□□□□□ -1.18
MCF2-202ENST00000370573 SSUH2Q9Y2M2 353 aa7.61□□□□□ -1.19
MCF2-202ENST00000370573 SPDYE4A6NLX3 237 aa7.59□□□□□ -1.19
MCF2-202ENST00000370573 PABPN1Q86U42 306 aaKnown RBP eCLIP7.59□□□□□ -1.19
MCF2-202ENST00000370573 CHRDL2Q6WN34 429 aa7.59□□□□□ -1.2
MCF2-202ENST00000370573 PITPNM1O00562 1244 aa7.57□□□□□ -1.2
MCF2-202ENST00000370573 CLEC11AQ9Y240 323 aa7.57□□□□□ -1.2
MCF2-202ENST00000370573 SPDYE1Q8NFV5 336 aaPredicted RBP7.5□□□□□ -1.21
MCF2-202ENST00000370573 FKBP8Q14318 412 aa7.49□□□□□ -1.21
MCF2-202ENST00000370573 PIP4P2Q8N4L2 257 aa7.46□□□□□ -1.21
MCF2-202ENST00000370573 PRR29P0C7W0 189 aa7.43□□□□□ -1.22
MCF2-202ENST00000370573 FXR2P51116 673 aaKnown RBP eCLIP7.42□□□□□ -1.22
MCF2-202ENST00000370573 CHADLQ6NUI6 762 aa7.4□□□□□ -1.22
MCF2-202ENST00000370573 PRKAR2AP13861 404 aaKnown RBP7.39□□□□□ -1.23
MCF2-202ENST00000370573 PROM2Q8N271 834 aa7.37□□□□□ -1.23
MCF2-202ENST00000370573 STAG3Q9UJ98 1225 aa7.35□□□□□ -1.23
MCF2-202ENST00000370573 HAX1O00165 279 aa7.29□□□□□ -1.24
MCF2-202ENST00000370573 CREBZFQ9NS37 354 aa7.28□□□□□ -1.24
MCF2-202ENST00000370573 FARP1Q9Y4F1 1045 aaPredicted RBP7.25□□□□□ -1.25
MCF2-202ENST00000370573 MIER1Q8N108 512 aa7.25□□□□□ -1.25
MCF2-202ENST00000370573 EVX2Q03828 476 aa7.24□□□□□ -1.25
MCF2-202ENST00000370573 SLC24A1O60721 1099 aa7.23□□□□□ -1.25
MCF2-202ENST00000370573 PLCD3Q8N3E9 789 aa7.2□□□□□ -1.26
MCF2-202ENST00000370573 MNX1P50219 401 aaPredicted RBP7.19□□□□□ -1.26
MCF2-202ENST00000370573 FBXO3Q9UK99 471 aa7.19□□□□□ -1.26
MCF2-202ENST00000370573 C19orf67A6NJJ6 358 aa7.17□□□□□ -1.26
MCF2-202ENST00000370573 PLEKHG5O94827 1062 aa7.16□□□□□ -1.26
MCF2-202ENST00000370573 CD44P16070 742 aaKnown RBP7.16□□□□□ -1.26
MCF2-202ENST00000370573 SP7Q8TDD2 431 aaPredicted RBP7.14□□□□□ -1.27
MCF2-202ENST00000370573 RTN4Q9NQC3 1192 aaKnown RBP7.14□□□□□ -1.27
MCF2-202ENST00000370573 NPM1P06748 294 aaKnown RBP eCLIP7.13□□□□□ -1.27
MCF2-202ENST00000370573 VASPP50552 380 aaPredicted RBP7.13□□□□□ -1.27
MCF2-202ENST00000370573 CCDC180Q9P1Z9 1646 aa7.12□□□□□ -1.27
MCF2-202ENST00000370573 ZRANB1Q9UGI0 708 aa7.11□□□□□ -1.27
MCF2-202ENST00000370573 TSPYL2Q9H2G4 693 aaPredicted RBP7.1□□□□□ -1.27
MCF2-202ENST00000370573 KLHL34Q8N239 644 aa7.09□□□□□ -1.27
MCF2-202ENST00000370573 RASEFQ8IZ41 740 aa7.07□□□□□ -1.28
MCF2-202ENST00000370573 PAK3O75914 559 aaPredicted RBP7.06□□□□□ -1.28
MCF2-202ENST00000370573 IFNLR1Q8IU57 520 aaPredicted RBP7.06□□□□□ -1.28
MCF2-202ENST00000370573 ZBTB47Q9UFB7 747 aaPredicted RBP7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms