RNA–Protein interactions for RNA: ENST00000369984.4

HCFC1-202, Transcript of host cell factor C1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HCFC1, Length 8,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-202ENST00000369984 DCAF8L2P0C7V8 631 aa20.91■□□□□ 0.94
HCFC1-202ENST00000369984 PELP1Q8IZL8 1130 aaKnown RBP20.21■□□□□ 0.83
HCFC1-202ENST00000369984 SUPT5HO00267 1087 aaKnown RBP19.94■□□□□ 0.78
HCFC1-202ENST00000369984 EHMT2Q96KQ7 1210 aa19.68■□□□□ 0.74
HCFC1-202ENST00000369984 ERICH6Q7L0X2 663 aa19.63■□□□□ 0.73
HCFC1-202ENST00000369984 SHROOM4Q9ULL8 1493 aa19.46■□□□□ 0.71
HCFC1-202ENST00000369984 APLP2Q06481 763 aa19.38■□□□□ 0.69
HCFC1-202ENST00000369984 MYT1Q01538 1121 aa19.28■□□□□ 0.68
HCFC1-202ENST00000369984 CCER1Q8TC90 406 aaPredicted RBP19.26■□□□□ 0.67
HCFC1-202ENST00000369984 CENPBP07199 599 aaPredicted RBP19.12■□□□□ 0.65
HCFC1-202ENST00000369984 TTBK1Q5TCY1 1321 aaPredicted RBP19.09■□□□□ 0.65
HCFC1-202ENST00000369984 NISCHQ9Y2I1 1504 aa19.04■□□□□ 0.64
HCFC1-202ENST00000369984 PCGF6Q9BYE7 350 aa19.04■□□□□ 0.64
HCFC1-202ENST00000369984 FAM9AQ8IZU1 332 aaPredicted RBP19.01■□□□□ 0.63
HCFC1-202ENST00000369984 ZEB1P37275 1124 aaPredicted RBP18.84■□□□□ 0.61
HCFC1-202ENST00000369984 NEFLP07196 543 aa18.8■□□□□ 0.6
HCFC1-202ENST00000369984 RANGAP1P46060 587 aaPredicted RBP18.72■□□□□ 0.59
HCFC1-202ENST00000369984 YTHDC1Q96MU7 727 aaKnown RBP18.68■□□□□ 0.58
HCFC1-202ENST00000369984 ATP1B4Q9UN42 357 aaPredicted RBP18.64■□□□□ 0.58
HCFC1-202ENST00000369984 DAXXQ9UER7 740 aaPredicted RBP18.48■□□□□ 0.55
HCFC1-202ENST00000369984 TRIM41Q8WV44 630 aa18.43■□□□□ 0.54
HCFC1-202ENST00000369984 UBTFP17480 764 aaKnown RBP18.38■□□□□ 0.53
HCFC1-202ENST00000369984 PPARGC1BQ86YN6 1023 aaKnown RBP18.17■□□□□ 0.5
HCFC1-202ENST00000369984 POLR3GLQ9BT43 218 aa18.11■□□□□ 0.49
HCFC1-202ENST00000369984 RTL5Q5HYW3 569 aaPredicted RBP18.07■□□□□ 0.48
HCFC1-202ENST00000369984 TRIM26Q12899 539 aaPredicted RBP18.06■□□□□ 0.48
HCFC1-202ENST00000369984 ZNF316A6NFI3 1004 aaPredicted RBP18.03■□□□□ 0.48
HCFC1-202ENST00000369984 HRCP23327 699 aa17.97■□□□□ 0.47
HCFC1-202ENST00000369984 MYT1LQ9UL68 1186 aa17.95■□□□□ 0.46
HCFC1-202ENST00000369984 ITGAEP38570 1179 aa17.95■□□□□ 0.46
HCFC1-202ENST00000369984 CNGB1Q14028 1251 aaPredicted RBP17.95■□□□□ 0.46
HCFC1-202ENST00000369984 CLSPNQ9HAW4 1339 aa17.9■□□□□ 0.46
HCFC1-202ENST00000369984 SLC4A1APQ9BWU0 796 aaKnown RBP17.84■□□□□ 0.45
HCFC1-202ENST00000369984 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.82■□□□□ 0.44
HCFC1-202ENST00000369984 HNRNPUL2Q1KMD3 747 aaKnown RBP17.82■□□□□ 0.44
HCFC1-202ENST00000369984 CHIC1Q5VXU3 224 aa17.77■□□□□ 0.43
HCFC1-202ENST00000369984 DIEXFQ68CQ4 756 aaKnown RBP17.69■□□□□ 0.42
HCFC1-202ENST00000369984 EIF5BO60841 1220 aaKnown RBP17.64■□□□□ 0.41
HCFC1-202ENST00000369984 LOC105371045A0A1W2PR82 267 aa17.57■□□□□ 0.4
HCFC1-202ENST00000369984 BCANQ96GW7 911 aa17.52■□□□□ 0.39
HCFC1-202ENST00000369984 CDK11AQ9UQ88 783 aaPredicted RBP17.51■□□□□ 0.39
HCFC1-202ENST00000369984 ZBTB47Q9UFB7 747 aaPredicted RBP17.49■□□□□ 0.39
HCFC1-202ENST00000369984 GLIPR1L2Q4G1C9 344 aa17.47■□□□□ 0.39
HCFC1-202ENST00000369984 GTF3C3Q9Y5Q9 886 aa17.44■□□□□ 0.38
HCFC1-202ENST00000369984 FAM50AQ14320 339 aaKnown RBP17.43■□□□□ 0.38
HCFC1-202ENST00000369984 NEUROD1Q13562 356 aa17.38■□□□□ 0.37
HCFC1-202ENST00000369984 ANP32CO43423 234 aa17.37■□□□□ 0.37
HCFC1-202ENST00000369984 BCL11AQ9H165 835 aa17.36■□□□□ 0.37
HCFC1-202ENST00000369984 TRIM52Q96A61 297 aa17.36■□□□□ 0.37
HCFC1-202ENST00000369984 CANXP27824 592 aaKnown RBP17.34■□□□□ 0.37
HCFC1-202ENST00000369984 SLC24A1O60721 1099 aa17.32■□□□□ 0.36
HCFC1-202ENST00000369984 ANP32AP39687 249 aaKnown RBP17.29■□□□□ 0.36
HCFC1-202ENST00000369984 ZNF326Q5BKZ1 582 aaKnown RBP17.25■□□□□ 0.35
HCFC1-202ENST00000369984 ANP32BQ92688 251 aaKnown RBP17.2■□□□□ 0.34
HCFC1-202ENST00000369984 NPM2Q86SE8 214 aaKnown RBP17.17■□□□□ 0.34
HCFC1-202ENST00000369984 NEFMP07197 916 aa17.15■□□□□ 0.34
HCFC1-202ENST00000369984 HSP90AA1P07900 732 aaKnown RBP17.09■□□□□ 0.33
HCFC1-202ENST00000369984 ACIN1Q9UKV3 1341 aaKnown RBP17.02■□□□□ 0.31
HCFC1-202ENST00000369984 UPF2Q9HAU5 1272 aaKnown RBP16.98■□□□□ 0.31
HCFC1-202ENST00000369984 ARXQ96QS3 562 aa16.94■□□□□ 0.3
HCFC1-202ENST00000369984 FKBP8Q14318 412 aa16.92■□□□□ 0.3
HCFC1-202ENST00000369984 CDK11BP21127 795 aaKnown RBP16.9■□□□□ 0.3
HCFC1-202ENST00000369984 NBR1Q14596 966 aa16.9■□□□□ 0.3
HCFC1-202ENST00000369984 FBLN2P98095 1184 aa16.81■□□□□ 0.28
HCFC1-202ENST00000369984 TNNT2P45379 298 aaPredicted RBP16.81■□□□□ 0.28
HCFC1-202ENST00000369984 HNRNPUQ00839 825 aaKnown RBP eCLIP16.78■□□□□ 0.28
HCFC1-202ENST00000369984 FAM9BQ8IZU0 186 aa16.74■□□□□ 0.27
HCFC1-202ENST00000369984 CCDC136Q96JN2 1154 aa16.72■□□□□ 0.27
HCFC1-202ENST00000369984 ARID3CA6NKF2 412 aa16.72■□□□□ 0.27
HCFC1-202ENST00000369984 SALL2Q9Y467 1007 aaPredicted RBP16.71■□□□□ 0.27
HCFC1-202ENST00000369984 TONSLQ96HA7 1378 aa16.71■□□□□ 0.26
HCFC1-202ENST00000369984 ZNF777Q9ULD5 760 aaPredicted RBP16.7■□□□□ 0.26
HCFC1-202ENST00000369984 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.69■□□□□ 0.26
HCFC1-202ENST00000369984 P3H3Q8IVL6 736 aa16.69■□□□□ 0.26
HCFC1-202ENST00000369984 AMER1Q5JTC6 1135 aaPredicted RBP16.67■□□□□ 0.26
HCFC1-202ENST00000369984 TMC1Q8TDI8 760 aa16.63■□□□□ 0.25
HCFC1-202ENST00000369984 DDX10Q13206 875 aaKnown RBP16.62■□□□□ 0.25
HCFC1-202ENST00000369984 STAG3Q9UJ98 1225 aa16.61■□□□□ 0.25
HCFC1-202ENST00000369984 ESF1Q9H501 851 aaKnown RBP16.61■□□□□ 0.25
HCFC1-202ENST00000369984 PABPN1Q86U42 306 aaKnown RBP eCLIP16.6■□□□□ 0.25
HCFC1-202ENST00000369984 TRIM44Q96DX7 344 aaPredicted RBP16.6■□□□□ 0.25
HCFC1-202ENST00000369984 CHGAP10645 457 aaKnown RBP16.58■□□□□ 0.25
HCFC1-202ENST00000369984 WDR43Q15061 677 aaKnown RBP eCLIP16.58■□□□□ 0.247e-6■■■■■ 27.3
HCFC1-202ENST00000369984 MYH16Q9H6N6 1097 aa16.57■□□□□ 0.24
HCFC1-202ENST00000369984 BECN1Q14457 450 aa16.53■□□□□ 0.24
HCFC1-202ENST00000369984 PLPPR3Q6T4P5 718 aa16.51■□□□□ 0.23
HCFC1-202ENST00000369984 DDRGK1Q96HY6 314 aa16.51■□□□□ 0.23
HCFC1-202ENST00000369984 NCLP19338 710 aaKnown RBP16.51■□□□□ 0.23
HCFC1-202ENST00000369984 IRX6P78412 446 aaPredicted RBP16.51■□□□□ 0.23
HCFC1-202ENST00000369984 ABCC9O60706 1549 aa16.5■□□□□ 0.23
HCFC1-202ENST00000369984 DNTTIP2Q5QJE6 756 aaKnown RBP16.46■□□□□ 0.23
HCFC1-202ENST00000369984 ANP32EQ9BTT0 268 aa16.46■□□□□ 0.23
HCFC1-202ENST00000369984 MRS2Q9HD23 443 aa16.46■□□□□ 0.23
HCFC1-202ENST00000369984 GOLGA6L22H0YM25 854 aa16.46■□□□□ 0.22
HCFC1-202ENST00000369984 NAP1L5Q96NT1 182 aaPredicted RBP16.45■□□□□ 0.22
HCFC1-202ENST00000369984 RTN4Q9NQC3 1192 aaKnown RBP16.45■□□□□ 0.22
HCFC1-202ENST00000369984 PTMAP06454 111 aaKnown RBP16.42■□□□□ 0.22
HCFC1-202ENST00000369984 SCAF1Q9H7N4 1312 aaKnown RBP16.41■□□□□ 0.22
HCFC1-202ENST00000369984 CSRNP3Q8WYN3 585 aa16.41■□□□□ 0.22
HCFC1-202ENST00000369984 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.224e-6■■■□□ 17.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms