RNA–Protein interactions for RNA: ENST00000366290.2

YBX3-204, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 512 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-204ENST00000366290 AEBP2Q6ZN18 517 aaPredicted RBP33.27■■■□□ 2.92
YBX3-204ENST00000366290 CHIC1Q5VXU3 224 aa32.06■■■□□ 2.72
YBX3-204ENST00000366290 SENP3Q9H4L4 574 aaPredicted RBP28.21■■■□□ 2.11
YBX3-204ENST00000366290 PHF23Q9BUL5 403 aaPredicted RBP28.19■■■□□ 2.1
YBX3-204ENST00000366290 FOXD1Q16676 465 aa26.28■■□□□ 1.8
YBX3-204ENST00000366290 PLPPR3Q6T4P5 718 aa25.81■■□□□ 1.72
YBX3-204ENST00000366290 PPP6R1Q9UPN7 881 aa25■■□□□ 1.59
YBX3-204ENST00000366290 ADRA2BP18089 450 aa24.91■■□□□ 1.58
YBX3-204ENST00000366290 PIAS4Q8N2W9 510 aaPredicted RBP24.64■■□□□ 1.54
YBX3-204ENST00000366290 MSH5O43196 834 aa24.33■■□□□ 1.49
YBX3-204ENST00000366290 POTEDQ86YR6 584 aa22.91■■□□□ 1.26
YBX3-204ENST00000366290 MAPK8IP2Q13387 824 aaPredicted RBP22.73■■□□□ 1.23
YBX3-204ENST00000366290 PPP4R3CPQ6ZMV5 832 aa22.7■■□□□ 1.22
YBX3-204ENST00000366290 SCAF1Q9H7N4 1312 aaKnown RBP22.7■■□□□ 1.22
YBX3-204ENST00000366290 DMRT2Q9Y5R5 561 aa22.48■■□□□ 1.19
YBX3-204ENST00000366290 CNKSR2Q8WXI2 1034 aa22.15■■□□□ 1.14
YBX3-204ENST00000366290 KCNA4P22459 653 aa22.02■■□□□ 1.12
YBX3-204ENST00000366290 NCBP3Q53F19 620 aaKnown RBP21.92■■□□□ 1.1
YBX3-204ENST00000366290 HOXD11P31277 338 aaPredicted RBP21.88■■□□□ 1.09
YBX3-204ENST00000366290 RNF216Q9NWF9 866 aaPredicted RBP21.83■■□□□ 1.09
YBX3-204ENST00000366290 NPM3O75607 178 aaKnown RBP21.71■■□□□ 1.07
YBX3-204ENST00000366290 DCAF8L1A6NGE4 600 aa21.44■■□□□ 1.02
YBX3-204ENST00000366290 DNAJC5BQ9UF47 199 aa21.17■□□□□ 0.98
YBX3-204ENST00000366290 SLC4A1APQ9BWU0 796 aaKnown RBP21.05■□□□□ 0.96
YBX3-204ENST00000366290 EHMT2Q96KQ7 1210 aa21.04■□□□□ 0.96
YBX3-204ENST00000366290 RNF39Q9H2S5 420 aa20.86■□□□□ 0.93
YBX3-204ENST00000366290 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.76■□□□□ 0.911e-8■□□□□ 9.1
YBX3-204ENST00000366290 SLC4A2P04920 1241 aa20.62■□□□□ 0.89
YBX3-204ENST00000366290 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
YBX3-204ENST00000366290 C1QBPQ07021 282 aaKnown RBP20.54■□□□□ 0.88
YBX3-204ENST00000366290 CACNB1Q02641 598 aaPredicted RBP20.53■□□□□ 0.88
YBX3-204ENST00000366290 U3KPZ7 1027 aaPredicted RBP20.47■□□□□ 0.87
YBX3-204ENST00000366290 ZBTB22O15209 634 aa20.28■□□□□ 0.84
YBX3-204ENST00000366290 FOXD4L1Q9NU39 408 aa20.12■□□□□ 0.81
YBX3-204ENST00000366290 MYCNP04198 464 aaPredicted RBP20.02■□□□□ 0.8
YBX3-204ENST00000366290 SPINK5Q9NQ38 1064 aaPredicted RBP20.01■□□□□ 0.79
YBX3-204ENST00000366290 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.97■□□□□ 0.79
YBX3-204ENST00000366290 HNRNPUL2Q1KMD3 747 aaKnown RBP19.97■□□□□ 0.79
YBX3-204ENST00000366290 SAMD1Q6SPF0 538 aaPredicted RBP19.9■□□□□ 0.78
YBX3-204ENST00000366290 CAPN15O75808 1086 aa19.88■□□□□ 0.77
YBX3-204ENST00000366290 APLP2Q06481 763 aa19.83■□□□□ 0.77
YBX3-204ENST00000366290 DSG3P32926 999 aa19.71■□□□□ 0.75
YBX3-204ENST00000366290 TRHP20396 242 aaPredicted RBP19.69■□□□□ 0.74
YBX3-204ENST00000366290 ZNF219Q9P2Y4 722 aaPredicted RBP19.69■□□□□ 0.74
YBX3-204ENST00000366290 ATF5Q9Y2D1 282 aaPredicted RBP19.59■□□□□ 0.73
YBX3-204ENST00000366290 ABCB7O75027 752 aa19.5■□□□□ 0.71
YBX3-204ENST00000366290 ATXN8OSP0DMR3 200 aa19.43■□□□□ 0.7
YBX3-204ENST00000366290 POLA2Q14181 598 aa19.3■□□□□ 0.68
YBX3-204ENST00000366290 ZBTB12Q9Y330 459 aaPredicted RBP18.92■□□□□ 0.62
YBX3-204ENST00000366290 NISCHQ9Y2I1 1504 aa18.78■□□□□ 0.6
YBX3-204ENST00000366290 MKRN4PQ13434 485 aaPredicted RBP18.72■□□□□ 0.59
YBX3-204ENST00000366290 RBM42Q9BTD8 480 aaKnown RBP18.72■□□□□ 0.59
YBX3-204ENST00000366290 OSCARQ8IYS5 282 aa18.7■□□□□ 0.58
YBX3-204ENST00000366290 FBLN2P98095 1184 aa18.67■□□□□ 0.58
YBX3-204ENST00000366290 FKBP8Q14318 412 aa18.56■□□□□ 0.56
YBX3-204ENST00000366290 AKT1S1Q96B36 256 aa18.43■□□□□ 0.54
YBX3-204ENST00000366290 SPDYE2BA6NHP3 402 aa18.41■□□□□ 0.54
YBX3-204ENST00000366290 SPDYE6P0CI01 402 aa18.41■□□□□ 0.54
YBX3-204ENST00000366290 SPDYE2Q495Y8 402 aa18.41■□□□□ 0.54
YBX3-204ENST00000366290 SSUH2Q9Y2M2 353 aa18.28■□□□□ 0.52
YBX3-204ENST00000366290 REM2Q8IYK8 340 aaPredicted RBP18.27■□□□□ 0.52
YBX3-204ENST00000366290 ZNF692Q9BU19 519 aaPredicted RBP18.25■□□□□ 0.51
YBX3-204ENST00000366290 CHRDL2Q6WN34 429 aa18.14■□□□□ 0.49
YBX3-204ENST00000366290 PITPNM1O00562 1244 aa18.09■□□□□ 0.49
YBX3-204ENST00000366290 SPDYE4A6NLX3 237 aa18.06■□□□□ 0.48
YBX3-204ENST00000366290 POTEHQ6S545 545 aa18.04■□□□□ 0.48
YBX3-204ENST00000366290 PABPN1Q86U42 306 aaKnown RBP eCLIP18.03■□□□□ 0.48
YBX3-204ENST00000366290 SPDYE1Q8NFV5 336 aaPredicted RBP17.94■□□□□ 0.46
YBX3-204ENST00000366290 CLEC11AQ9Y240 323 aa17.87■□□□□ 0.45
YBX3-204ENST00000366290 PIP4P2Q8N4L2 257 aa17.84■□□□□ 0.45
YBX3-204ENST00000366290 FXR2P51116 673 aaKnown RBP eCLIP17.83■□□□□ 0.44
YBX3-204ENST00000366290 PROM2Q8N271 834 aa17.83■□□□□ 0.44
YBX3-204ENST00000366290 AMER1Q5JTC6 1135 aaPredicted RBP17.78■□□□□ 0.44
YBX3-204ENST00000366290 RTN4Q9NQC3 1192 aaKnown RBP17.76■□□□□ 0.43
YBX3-204ENST00000366290 FBXO3Q9UK99 471 aa17.75■□□□□ 0.43
YBX3-204ENST00000366290 PRR29P0C7W0 189 aa17.65■□□□□ 0.42
YBX3-204ENST00000366290 PRKAR2AP13861 404 aaKnown RBP17.59■□□□□ 0.41
YBX3-204ENST00000366290 STAG3Q9UJ98 1225 aa17.59■□□□□ 0.41
YBX3-204ENST00000366290 CHADLQ6NUI6 762 aa17.53■□□□□ 0.4
YBX3-204ENST00000366290 VASPP50552 380 aaPredicted RBP17.51■□□□□ 0.39
YBX3-204ENST00000366290 CREBZFQ9NS37 354 aa17.41■□□□□ 0.38
YBX3-204ENST00000366290 HAX1O00165 279 aa17.31■□□□□ 0.36
YBX3-204ENST00000366290 IFNLR1Q8IU57 520 aaPredicted RBP17.31■□□□□ 0.36
YBX3-204ENST00000366290 FARP1Q9Y4F1 1045 aaPredicted RBP17.31■□□□□ 0.36
YBX3-204ENST00000366290 EVX2Q03828 476 aa17.24■□□□□ 0.35
YBX3-204ENST00000366290 C19orf67A6NJJ6 358 aa17.23■□□□□ 0.35
YBX3-204ENST00000366290 MNX1P50219 401 aaPredicted RBP17.22■□□□□ 0.35
YBX3-204ENST00000366290 SP7Q8TDD2 431 aaPredicted RBP17.15■□□□□ 0.34
YBX3-204ENST00000366290 PLCD3Q8N3E9 789 aa17.11■□□□□ 0.33
YBX3-204ENST00000366290 MIER1Q8N108 512 aa17.09■□□□□ 0.33
YBX3-204ENST00000366290 KLHL34Q8N239 644 aa17.09■□□□□ 0.33
YBX3-204ENST00000366290 CD44P16070 742 aaKnown RBP17.07■□□□□ 0.32
YBX3-204ENST00000366290 SPOCK2Q92563 424 aa17.02■□□□□ 0.32
YBX3-204ENST00000366290 NPM1P06748 294 aaKnown RBP eCLIP17.01■□□□□ 0.31
YBX3-204ENST00000366290 PLEKHG5O94827 1062 aa16.98■□□□□ 0.31
YBX3-204ENST00000366290 PKD2Q13563 968 aa16.93■□□□□ 0.3
YBX3-204ENST00000366290 ZRANB1Q9UGI0 708 aa16.9■□□□□ 0.3
YBX3-204ENST00000366290 ZBTB47Q9UFB7 747 aaPredicted RBP16.87■□□□□ 0.29
YBX3-204ENST00000366290 SLC24A1O60721 1099 aa16.86■□□□□ 0.29
YBX3-204ENST00000366290 ZNF579Q8NAF0 562 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms