RNA–Protein interactions for RNA: ENST00000361813.5

SMG5-201, Transcript of SMG5, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG5, Length 4,559 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG5-201ENST00000361813 NISCHQ9Y2I1 1504 aa30.62■■■□□ 2.49
SMG5-201ENST00000361813 DCAF8L2P0C7V8 631 aa30.12■■■□□ 2.41
SMG5-201ENST00000361813 SUPT5HO00267 1087 aaKnown RBP29.9■■■□□ 2.38
SMG5-201ENST00000361813 SHROOM4Q9ULL8 1493 aa29.46■■■□□ 2.31
SMG5-201ENST00000361813 PCGF6Q9BYE7 350 aa28.78■■■□□ 2.2
SMG5-201ENST00000361813 EHMT2Q96KQ7 1210 aa28.57■■■□□ 2.16
SMG5-201ENST00000361813 FAM9AQ8IZU1 332 aaPredicted RBP28.06■■■□□ 2.08
SMG5-201ENST00000361813 HRCP23327 699 aa27.99■■■□□ 2.07
SMG5-201ENST00000361813 ZEB1P37275 1124 aaPredicted RBP27.79■■■□□ 2.04
SMG5-201ENST00000361813 PELP1Q8IZL8 1130 aaKnown RBP27.78■■■□□ 2.04
SMG5-201ENST00000361813 TTBK1Q5TCY1 1321 aaPredicted RBP27.72■■■□□ 2.03
SMG5-201ENST00000361813 PPARGC1BQ86YN6 1023 aaKnown RBP27.6■■■□□ 2.01
SMG5-201ENST00000361813 CENPBP07199 599 aaPredicted RBP27.58■■■□□ 2.01
SMG5-201ENST00000361813 TRIM41Q8WV44 630 aa27.54■■■□□ 2
SMG5-201ENST00000361813 CCER1Q8TC90 406 aaPredicted RBP27.53■■■□□ 2
SMG5-201ENST00000361813 CHIC1Q5VXU3 224 aa27.5■■□□□ 1.99
SMG5-201ENST00000361813 TRIM26Q12899 539 aaPredicted RBP27.46■■□□□ 1.99
SMG5-201ENST00000361813 LOC105371045A0A1W2PR82 267 aa27.41■■□□□ 1.98
SMG5-201ENST00000361813 APLP2Q06481 763 aa27.33■■□□□ 1.97
SMG5-201ENST00000361813 YTHDC1Q96MU7 727 aaKnown RBP27.16■■□□□ 1.94
SMG5-201ENST00000361813 MYT1Q01538 1121 aa27.02■■□□□ 1.92
SMG5-201ENST00000361813 RANGAP1P46060 587 aaPredicted RBP26.95■■□□□ 1.9
SMG5-201ENST00000361813 UBTFP17480 764 aaKnown RBP26.86■■□□□ 1.89
SMG5-201ENST00000361813 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.67■■□□□ 1.86
SMG5-201ENST00000361813 ERICH6Q7L0X2 663 aa26.56■■□□□ 1.84
SMG5-201ENST00000361813 DIEXFQ68CQ4 756 aaKnown RBP26.55■■□□□ 1.84
SMG5-201ENST00000361813 NEFLP07196 543 aa26.41■■□□□ 1.82
SMG5-201ENST00000361813 GTF3C3Q9Y5Q9 886 aa26.41■■□□□ 1.82
SMG5-201ENST00000361813 HNRNPUL2Q1KMD3 747 aaKnown RBP26.38■■□□□ 1.81
SMG5-201ENST00000361813 ATP1B4Q9UN42 357 aaPredicted RBP26.27■■□□□ 1.8
SMG5-201ENST00000361813 ACIN1Q9UKV3 1341 aaKnown RBP26.18■■□□□ 1.78
SMG5-201ENST00000361813 ITGAEP38570 1179 aa26.1■■□□□ 1.77
SMG5-201ENST00000361813 DCAF1Q9Y4B6 1507 aa25.98■■□□□ 1.75
SMG5-201ENST00000361813 SCAF1Q9H7N4 1312 aaKnown RBP25.96■■□□□ 1.75
SMG5-201ENST00000361813 MYO15BQ96JP2 1530 aa25.94■■□□□ 1.74
SMG5-201ENST00000361813 ZNF316A6NFI3 1004 aaPredicted RBP25.89■■□□□ 1.74
SMG5-201ENST00000361813 NEUROD1Q13562 356 aa25.83■■□□□ 1.73
SMG5-201ENST00000361813 BCANQ96GW7 911 aa25.74■■□□□ 1.71
SMG5-201ENST00000361813 ZCCHC6Q5VYS8 1495 aaKnown RBP25.56■■□□□ 1.68
SMG5-201ENST00000361813 CNGB1Q14028 1251 aaPredicted RBP25.51■■□□□ 1.67
SMG5-201ENST00000361813 POLR3GLQ9BT43 218 aa25.47■■□□□ 1.67
SMG5-201ENST00000361813 CSRNP3Q8WYN3 585 aa25.38■■□□□ 1.65
SMG5-201ENST00000361813 FAM50AQ14320 339 aaKnown RBP25.35■■□□□ 1.65
SMG5-201ENST00000361813 MIER1Q8N108 512 aa25.29■■□□□ 1.64
SMG5-201ENST00000361813 ANP32CO43423 234 aa25.25■■□□□ 1.63
SMG5-201ENST00000361813 DAXXQ9UER7 740 aaPredicted RBP25.21■■□□□ 1.63
SMG5-201ENST00000361813 RTL5Q5HYW3 569 aaPredicted RBP25.2■■□□□ 1.62
SMG5-201ENST00000361813 CDK11AQ9UQ88 783 aaPredicted RBP25.18■■□□□ 1.62
SMG5-201ENST00000361813 ABCC9O60706 1549 aa25.16■■□□□ 1.62
SMG5-201ENST00000361813 CCDC180Q9P1Z9 1646 aa25.16■■□□□ 1.62
SMG5-201ENST00000361813 FKBP8Q14318 412 aa25.15■■□□□ 1.62
SMG5-201ENST00000361813 PABPN1Q86U42 306 aaKnown RBP eCLIP25.12■■□□□ 1.617e-7■■■■□ 21.7
SMG5-201ENST00000361813 CLSPNQ9HAW4 1339 aa25.08■■□□□ 1.61
SMG5-201ENST00000361813 TRIM52Q96A61 297 aa24.99■■□□□ 1.59
SMG5-201ENST00000361813 DDX10Q13206 875 aaKnown RBP24.97■■□□□ 1.59
SMG5-201ENST00000361813 SCRIBQ14160 1630 aa24.95■■□□□ 1.58
SMG5-201ENST00000361813 RSF1Q96T23 1441 aaPredicted RBP24.86■■□□□ 1.57
SMG5-201ENST00000361813 P3H3Q8IVL6 736 aa24.82■■□□□ 1.56
SMG5-201ENST00000361813 HNRNPUQ00839 825 aaKnown RBP eCLIP24.78■■□□□ 1.56
SMG5-201ENST00000361813 ZNF326Q5BKZ1 582 aaKnown RBP24.75■■□□□ 1.55
SMG5-201ENST00000361813 CEP162Q5TB80 1403 aa24.74■■□□□ 1.55
SMG5-201ENST00000361813 HIRIP3Q9BW71 556 aaPredicted RBP24.68■■□□□ 1.54
SMG5-201ENST00000361813 ANP32EQ9BTT0 268 aa24.66■■□□□ 1.54
SMG5-201ENST00000361813 ANP32AP39687 249 aaKnown RBP24.65■■□□□ 1.54
SMG5-201ENST00000361813 IRX6P78412 446 aaPredicted RBP24.62■■□□□ 1.53
SMG5-201ENST00000361813 CLIP1P30622 1438 aa24.62■■□□□ 1.53
SMG5-201ENST00000361813 TONSLQ96HA7 1378 aa24.6■■□□□ 1.53
SMG5-201ENST00000361813 SUPT16HQ9Y5B9 1047 aaKnown RBP24.59■■□□□ 1.53
SMG5-201ENST00000361813 NPM2Q86SE8 214 aaKnown RBP24.59■■□□□ 1.53
SMG5-201ENST00000361813 FAM9BQ8IZU0 186 aa24.58■■□□□ 1.53
SMG5-201ENST00000361813 NBR1Q14596 966 aa24.52■■□□□ 1.52
SMG5-201ENST00000361813 TNIKQ9UKE5 1360 aa24.48■■□□□ 1.51
SMG5-201ENST00000361813 MYT1LQ9UL68 1186 aa24.47■■□□□ 1.51
SMG5-201ENST00000361813 ARID3CA6NKF2 412 aa24.46■■□□□ 1.51
SMG5-201ENST00000361813 GOLGA3Q08378 1498 aa24.42■■□□□ 1.5
SMG5-201ENST00000361813 SLC4A1APQ9BWU0 796 aaKnown RBP24.42■■□□□ 1.5
SMG5-201ENST00000361813 EEA1Q15075 1411 aa24.37■■□□□ 1.49
SMG5-201ENST00000361813 CCDC136Q96JN2 1154 aa24.37■■□□□ 1.49
SMG5-201ENST00000361813 MRS2Q9HD23 443 aa24.34■■□□□ 1.49
SMG5-201ENST00000361813 ZBTB47Q9UFB7 747 aaPredicted RBP24.32■■□□□ 1.48
SMG5-201ENST00000361813 RB1CC1Q8TDY2 1594 aa24.31■■□□□ 1.48
SMG5-201ENST00000361813 EIF5BO60841 1220 aaKnown RBP24.3■■□□□ 1.48
SMG5-201ENST00000361813 SALL2Q9Y467 1007 aaPredicted RBP24.3■■□□□ 1.48
SMG5-201ENST00000361813 CHIC2Q9UKJ5 165 aa24.28■■□□□ 1.48
SMG5-201ENST00000361813 SIN3AQ96ST3 1273 aa24.23■■□□□ 1.47
SMG5-201ENST00000361813 SOGA1O94964 1423 aa24.23■■□□□ 1.47
SMG5-201ENST00000361813 BCL11AQ9H165 835 aa24.22■■□□□ 1.47
SMG5-201ENST00000361813 CECR2Q9BXF3 1484 aa24.21■■□□□ 1.47
SMG5-201ENST00000361813 WRNQ14191 1432 aaPredicted RBP eCLIP24.2■■□□□ 1.46
SMG5-201ENST00000361813 TSHZ2Q9NRE2 1034 aa24.18■■□□□ 1.46
SMG5-201ENST00000361813 TMC1Q8TDI8 760 aa24.17■■□□□ 1.46
SMG5-201ENST00000361813 ZNF777Q9ULD5 760 aaPredicted RBP24.16■■□□□ 1.46
SMG5-201ENST00000361813 RBM19Q9Y4C8 960 aaKnown RBP24.15■■□□□ 1.46
SMG5-201ENST00000361813 CEP164Q9UPV0 1460 aa24.14■■□□□ 1.46
SMG5-201ENST00000361813 CANXP27824 592 aaKnown RBP24.14■■□□□ 1.45
SMG5-201ENST00000361813 SENP3-EIF4A1A0A087X0R7 540 aa24.13■■□□□ 1.45
SMG5-201ENST00000361813 EIF4G2P78344 907 aaKnown RBP eCLIP24.12■■□□□ 1.45
SMG5-201ENST00000361813 RRP7BPQ9NSQ0 103 aa24.04■■□□□ 1.44
SMG5-201ENST00000361813 MTUS2Q5JR59 1369 aa24.04■■□□□ 1.44
SMG5-201ENST00000361813 PPP4R2Q9NY27 417 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms