RNA–Protein interactions for RNA: ENST00000358813.4

CCL20-201, Transcript of C-C motif chemokine ligand 20, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCL20, Length 800 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL20-201ENST00000358813 AEBP2Q6ZN18 517 aaPredicted RBP23.28■■□□□ 1.32
CCL20-201ENST00000358813 CHIC1Q5VXU3 224 aa22.73■■□□□ 1.23
CCL20-201ENST00000358813 PHF23Q9BUL5 403 aaPredicted RBP19.97■□□□□ 0.79
CCL20-201ENST00000358813 SENP3Q9H4L4 574 aaPredicted RBP19.79■□□□□ 0.76
CCL20-201ENST00000358813 PLPPR3Q6T4P5 718 aa18.47■□□□□ 0.55
CCL20-201ENST00000358813 FOXD1Q16676 465 aa18.36■□□□□ 0.53
CCL20-201ENST00000358813 ADRA2BP18089 450 aa17.65■□□□□ 0.42
CCL20-201ENST00000358813 PPP6R1Q9UPN7 881 aa17.64■□□□□ 0.41
CCL20-201ENST00000358813 PIAS4Q8N2W9 510 aaPredicted RBP17.34■□□□□ 0.37
CCL20-201ENST00000358813 MSH5O43196 834 aa16.96■□□□□ 0.31
CCL20-201ENST00000358813 PPP4R3CPQ6ZMV5 832 aa16.27■□□□□ 0.2
CCL20-201ENST00000358813 SCAF1Q9H7N4 1312 aaKnown RBP16.18■□□□□ 0.18
CCL20-201ENST00000358813 MAPK8IP2Q13387 824 aaPredicted RBP16.02■□□□□ 0.16
CCL20-201ENST00000358813 KCNA4P22459 653 aa15.86■□□□□ 0.13
CCL20-201ENST00000358813 NCBP3Q53F19 620 aaKnown RBP15.86■□□□□ 0.13
CCL20-201ENST00000358813 CNKSR2Q8WXI2 1034 aa15.82■□□□□ 0.12
CCL20-201ENST00000358813 DMRT2Q9Y5R5 561 aa15.78■□□□□ 0.12
CCL20-201ENST00000358813 NPM3O75607 178 aaKnown RBP15.59■□□□□ 0.09
CCL20-201ENST00000358813 RNF216Q9NWF9 866 aaPredicted RBP15.51■□□□□ 0.07
CCL20-201ENST00000358813 POTEDQ86YR6 584 aa15.47■□□□□ 0.07
CCL20-201ENST00000358813 HOXD11P31277 338 aaPredicted RBP15.44■□□□□ 0.06
CCL20-201ENST00000358813 DCAF8L1A6NGE4 600 aa15.17■□□□□ 0.02
CCL20-201ENST00000358813 SLC4A1APQ9BWU0 796 aaKnown RBP15.12■□□□□ 0.01
CCL20-201ENST00000358813 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
CCL20-201ENST00000358813 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.77□□□□□ -0.05
CCL20-201ENST00000358813 SLC4A2P04920 1241 aa14.71□□□□□ -0.05
CCL20-201ENST00000358813 EHMT2Q96KQ7 1210 aa14.68□□□□□ -0.06
CCL20-201ENST00000358813 FOXD4L1Q9NU39 408 aa14.6□□□□□ -0.07
CCL20-201ENST00000358813 ZBTB22O15209 634 aa14.56□□□□□ -0.08
CCL20-201ENST00000358813 RNF39Q9H2S5 420 aa14.51□□□□□ -0.09
CCL20-201ENST00000358813 CSRNP3Q8WYN3 585 aa14.48□□□□□ -0.09
CCL20-201ENST00000358813 U3KPZ7 1027 aaPredicted RBP14.48□□□□□ -0.09
CCL20-201ENST00000358813 MYCNP04198 464 aaPredicted RBP14.42□□□□□ -0.1
CCL20-201ENST00000358813 C1QBPQ07021 282 aaKnown RBP14.35□□□□□ -0.11
CCL20-201ENST00000358813 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.32□□□□□ -0.12
CCL20-201ENST00000358813 HNRNPUL2Q1KMD3 747 aaKnown RBP14.32□□□□□ -0.12
CCL20-201ENST00000358813 SAMD1Q6SPF0 538 aaPredicted RBP14.27□□□□□ -0.13
CCL20-201ENST00000358813 CACNB1Q02641 598 aaPredicted RBP14.2□□□□□ -0.14
CCL20-201ENST00000358813 APLP2Q06481 763 aa14.19□□□□□ -0.14
CCL20-201ENST00000358813 ATXN8OSP0DMR3 200 aa14.09□□□□□ -0.15
CCL20-201ENST00000358813 SPINK5Q9NQ38 1064 aaPredicted RBP14.09□□□□□ -0.15
CCL20-201ENST00000358813 CAPN15O75808 1086 aa14.08□□□□□ -0.16
CCL20-201ENST00000358813 ATF5Q9Y2D1 282 aaPredicted RBP14.02□□□□□ -0.17
CCL20-201ENST00000358813 TRHP20396 242 aaPredicted RBP14□□□□□ -0.17
CCL20-201ENST00000358813 ZNF219Q9P2Y4 722 aaPredicted RBP13.98□□□□□ -0.17
CCL20-201ENST00000358813 ABCB7O75027 752 aa13.8□□□□□ -0.2
CCL20-201ENST00000358813 DSG3P32926 999 aa13.8□□□□□ -0.2
CCL20-201ENST00000358813 POLA2Q14181 598 aa13.76□□□□□ -0.21
CCL20-201ENST00000358813 ZBTB12Q9Y330 459 aaPredicted RBP13.53□□□□□ -0.24
CCL20-201ENST00000358813 FBLN2P98095 1184 aa13.48□□□□□ -0.25
CCL20-201ENST00000358813 MKRN4PQ13434 485 aaPredicted RBP13.4□□□□□ -0.26
CCL20-201ENST00000358813 OSCARQ8IYS5 282 aa13.28□□□□□ -0.28
CCL20-201ENST00000358813 RBM42Q9BTD8 480 aaKnown RBP13.18□□□□□ -0.3
CCL20-201ENST00000358813 SPDYE2BA6NHP3 402 aa13.15□□□□□ -0.3
CCL20-201ENST00000358813 SPDYE6P0CI01 402 aa13.15□□□□□ -0.3
CCL20-201ENST00000358813 SPDYE2Q495Y8 402 aa13.15□□□□□ -0.3
CCL20-201ENST00000358813 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
CCL20-201ENST00000358813 FKBP8Q14318 412 aa13.12□□□□□ -0.31
CCL20-201ENST00000358813 ZNF692Q9BU19 519 aaPredicted RBP13.12□□□□□ -0.31
CCL20-201ENST00000358813 SSUH2Q9Y2M2 353 aa13.02□□□□□ -0.33
CCL20-201ENST00000358813 AKT1S1Q96B36 256 aa13□□□□□ -0.33
CCL20-201ENST00000358813 PABPN1Q86U42 306 aaKnown RBP eCLIP12.94□□□□□ -0.34
CCL20-201ENST00000358813 SLC24A1O60721 1099 aa12.93□□□□□ -0.34
CCL20-201ENST00000358813 REM2Q8IYK8 340 aaPredicted RBP12.88□□□□□ -0.35
CCL20-201ENST00000358813 PROM2Q8N271 834 aa12.85□□□□□ -0.35
CCL20-201ENST00000358813 AMER1Q5JTC6 1135 aaPredicted RBP12.8□□□□□ -0.36
CCL20-201ENST00000358813 SPDYE1Q8NFV5 336 aaPredicted RBP12.78□□□□□ -0.36
CCL20-201ENST00000358813 CLEC11AQ9Y240 323 aa12.75□□□□□ -0.37
CCL20-201ENST00000358813 PITPNM1O00562 1244 aa12.73□□□□□ -0.37
CCL20-201ENST00000358813 RTN4Q9NQC3 1192 aaKnown RBP12.73□□□□□ -0.37
CCL20-201ENST00000358813 STAG3Q9UJ98 1225 aa12.72□□□□□ -0.37
CCL20-201ENST00000358813 FBXO3Q9UK99 471 aa12.67□□□□□ -0.38
CCL20-201ENST00000358813 PRR29P0C7W0 189 aa12.63□□□□□ -0.39
CCL20-201ENST00000358813 CHRDL2Q6WN34 429 aa12.63□□□□□ -0.39
CCL20-201ENST00000358813 VASPP50552 380 aaPredicted RBP12.48□□□□□ -0.41
CCL20-201ENST00000358813 FXR2P51116 673 aaKnown RBP eCLIP12.48□□□□□ -0.41
CCL20-201ENST00000358813 MIER1Q8N108 512 aa12.48□□□□□ -0.41
CCL20-201ENST00000358813 PIP4P2Q8N4L2 257 aa12.47□□□□□ -0.41
CCL20-201ENST00000358813 PLCD3Q8N3E9 789 aa12.46□□□□□ -0.41
CCL20-201ENST00000358813 PLEKHG5O94827 1062 aa12.44□□□□□ -0.42
CCL20-201ENST00000358813 PRKAR2AP13861 404 aaKnown RBP12.42□□□□□ -0.42
CCL20-201ENST00000358813 CHADLQ6NUI6 762 aa12.42□□□□□ -0.42
CCL20-201ENST00000358813 CREBZFQ9NS37 354 aa12.42□□□□□ -0.42
CCL20-201ENST00000358813 KLHL34Q8N239 644 aa12.32□□□□□ -0.44
CCL20-201ENST00000358813 ZBTB47Q9UFB7 747 aaPredicted RBP12.31□□□□□ -0.44
CCL20-201ENST00000358813 IFNLR1Q8IU57 520 aaPredicted RBP12.29□□□□□ -0.44
CCL20-201ENST00000358813 FARP1Q9Y4F1 1045 aaPredicted RBP12.29□□□□□ -0.44
CCL20-201ENST00000358813 MNX1P50219 401 aaPredicted RBP12.26□□□□□ -0.45
CCL20-201ENST00000358813 POTEHQ6S545 545 aa12.26□□□□□ -0.45
CCL20-201ENST00000358813 NPM1P06748 294 aaKnown RBP eCLIP12.25□□□□□ -0.45
CCL20-201ENST00000358813 SPOCK2Q92563 424 aa12.18□□□□□ -0.46
CCL20-201ENST00000358813 HAX1O00165 279 aa12.11□□□□□ -0.47
CCL20-201ENST00000358813 NUBP1P53384 320 aa12.11□□□□□ -0.47
CCL20-201ENST00000358813 CD44P16070 742 aaKnown RBP12.07□□□□□ -0.48
CCL20-201ENST00000358813 RASEFQ8IZ41 740 aa12.07□□□□□ -0.48
CCL20-201ENST00000358813 C19orf67A6NJJ6 358 aa12.06□□□□□ -0.48
CCL20-201ENST00000358813 PAK3O75914 559 aaPredicted RBP12.06□□□□□ -0.48
CCL20-201ENST00000358813 FAM212AQ96EL1 285 aa12.05□□□□□ -0.48
CCL20-201ENST00000358813 TSPYL2Q9H2G4 693 aaPredicted RBP12.05□□□□□ -0.48
CCL20-201ENST00000358813 DCAF8Q5TAQ9 597 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms