RNA–Protein interactions for RNA: ENST00000355360.8

PGBD2-202, Transcript of piggyBac transposable element derived 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PGBD2, Length 2,879 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PGBD2-202ENST00000355360 NISCHQ9Y2I1 1504 aa29.17■■■□□ 2.26
PGBD2-202ENST00000355360 SHROOM4Q9ULL8 1493 aa25.3■■□□□ 1.64
PGBD2-202ENST00000355360 SUPT5HO00267 1087 aaKnown RBP24.75■■□□□ 1.55
PGBD2-202ENST00000355360 DCAF8L2P0C7V8 631 aa24.68■■□□□ 1.54
PGBD2-202ENST00000355360 CCDC180Q9P1Z9 1646 aa24.64■■□□□ 1.53
PGBD2-202ENST00000355360 ZCCHC6Q5VYS8 1495 aaKnown RBP24.63■■□□□ 1.53
PGBD2-202ENST00000355360 CHIC1Q5VXU3 224 aa23.84■■□□□ 1.41
PGBD2-202ENST00000355360 MYO15BQ96JP2 1530 aa23.84■■□□□ 1.41
PGBD2-202ENST00000355360 DCAF1Q9Y4B6 1507 aa23.69■■□□□ 1.38
PGBD2-202ENST00000355360 SCRIBQ14160 1630 aa23.44■■□□□ 1.34
PGBD2-202ENST00000355360 LOC105371045A0A1W2PR82 267 aa23.34■■□□□ 1.33
PGBD2-202ENST00000355360 ABCC9O60706 1549 aa23.28■■□□□ 1.32
PGBD2-202ENST00000355360 PCGF6Q9BYE7 350 aa23.22■■□□□ 1.31
PGBD2-202ENST00000355360 RSF1Q96T23 1441 aaPredicted RBP23.14■■□□□ 1.3
PGBD2-202ENST00000355360 RB1CC1Q8TDY2 1594 aa22.99■■□□□ 1.27
PGBD2-202ENST00000355360 HRCP23327 699 aa22.99■■□□□ 1.27
PGBD2-202ENST00000355360 EHMT2Q96KQ7 1210 aa22.97■■□□□ 1.27
PGBD2-202ENST00000355360 CECR2Q9BXF3 1484 aa22.95■■□□□ 1.27
PGBD2-202ENST00000355360 FAM9AQ8IZU1 332 aaPredicted RBP22.95■■□□□ 1.26
PGBD2-202ENST00000355360 TRIM41Q8WV44 630 aa22.87■■□□□ 1.25
PGBD2-202ENST00000355360 PPARGC1BQ86YN6 1023 aaKnown RBP22.85■■□□□ 1.25
PGBD2-202ENST00000355360 NACADO15069 1562 aa22.83■■□□□ 1.24
PGBD2-202ENST00000355360 MROH2BQ7Z745 1585 aa22.8■■□□□ 1.24
PGBD2-202ENST00000355360 WIZO95785 1651 aa22.72■■□□□ 1.23
PGBD2-202ENST00000355360 TRIM26Q12899 539 aaPredicted RBP22.55■■□□□ 1.2
PGBD2-202ENST00000355360 PABPN1Q86U42 306 aaKnown RBP eCLIP22.38■■□□□ 1.17
PGBD2-202ENST00000355360 BAZ1AQ9NRL2 1556 aaPredicted RBP22.37■■□□□ 1.17
PGBD2-202ENST00000355360 UNC13AQ9UPW8 1703 aa22.36■■□□□ 1.17
PGBD2-202ENST00000355360 ABCC8Q09428 1581 aa22.27■■□□□ 1.16
PGBD2-202ENST00000355360 SMARCA4P51532 1647 aa22.23■■□□□ 1.15
PGBD2-202ENST00000355360 EIF4G1Q04637 1599 aaKnown RBP22.21■■□□□ 1.15
PGBD2-202ENST00000355360 CCDC88BA6NC98 1476 aa22.2■■□□□ 1.14
PGBD2-202ENST00000355360 TTBK1Q5TCY1 1321 aaPredicted RBP22.17■■□□□ 1.14
PGBD2-202ENST00000355360 TOP2AP11388 1531 aaKnown RBP22.16■■□□□ 1.14
PGBD2-202ENST00000355360 SMARCA2P51531 1590 aa22.12■■□□□ 1.13
PGBD2-202ENST00000355360 BICRAQ9NZM4 1560 aa22.03■■□□□ 1.12
PGBD2-202ENST00000355360 SOGA1O94964 1423 aa22.03■■□□□ 1.12
PGBD2-202ENST00000355360 RUSC2Q8N2Y8 1516 aa21.98■■□□□ 1.11
PGBD2-202ENST00000355360 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.92■■□□□ 1.1
PGBD2-202ENST00000355360 UBTFP17480 764 aaKnown RBP21.86■■□□□ 1.09
PGBD2-202ENST00000355360 ZEB1P37275 1124 aaPredicted RBP21.85■■□□□ 1.09
PGBD2-202ENST00000355360 CEP162Q5TB80 1403 aa21.82■■□□□ 1.08
PGBD2-202ENST00000355360 CSRNP3Q8WYN3 585 aa21.8■■□□□ 1.08
PGBD2-202ENST00000355360 CCER1Q8TC90 406 aaPredicted RBP21.74■■□□□ 1.07
PGBD2-202ENST00000355360 WRNQ14191 1432 aaPredicted RBP eCLIP21.74■■□□□ 1.07
PGBD2-202ENST00000355360 RANGAP1P46060 587 aaPredicted RBP21.72■■□□□ 1.07
PGBD2-202ENST00000355360 ATAD2BQ9ULI0 1458 aa21.69■■□□□ 1.06
PGBD2-202ENST00000355360 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
PGBD2-202ENST00000355360 TNIKQ9UKE5 1360 aa21.66■■□□□ 1.06
PGBD2-202ENST00000355360 BAZ1BQ9UIG0 1483 aaKnown RBP21.66■■□□□ 1.06
PGBD2-202ENST00000355360 PEG3Q9GZU2 1588 aa21.65■■□□□ 1.06
PGBD2-202ENST00000355360 GOLGA3Q08378 1498 aa21.57■■□□□ 1.04
PGBD2-202ENST00000355360 EEA1Q15075 1411 aa21.55■■□□□ 1.04
PGBD2-202ENST00000355360 RAPGEF2Q9Y4G8 1499 aa21.44■■□□□ 1.02
PGBD2-202ENST00000355360 HNRNPUL2Q1KMD3 747 aaKnown RBP21.44■■□□□ 1.02
PGBD2-202ENST00000355360 CEP164Q9UPV0 1460 aa21.43■■□□□ 1.02
PGBD2-202ENST00000355360 CLIP1P30622 1438 aa21.4■■□□□ 1.02
PGBD2-202ENST00000355360 KIF21BO75037 1637 aa21.35■■□□□ 1.01
PGBD2-202ENST00000355360 TOP2BQ02880 1626 aa21.28■■□□□ 1
PGBD2-202ENST00000355360 SCAF1Q9H7N4 1312 aaKnown RBP21.28■■□□□ 1
PGBD2-202ENST00000355360 APLP2Q06481 763 aa21.24■□□□□ 0.99
PGBD2-202ENST00000355360 DIEXFQ68CQ4 756 aaKnown RBP21.24■□□□□ 0.99
PGBD2-202ENST00000355360 VPS8Q8N3P4 1428 aa21.24■□□□□ 0.99
PGBD2-202ENST00000355360 CUX1P39880 1505 aa21.2■□□□□ 0.98
PGBD2-202ENST00000355360 NCAPD3P42695 1498 aa21.18■□□□□ 0.98
PGBD2-202ENST00000355360 BIVM-ERCC5R4GMW8 1640 aa21.17■□□□□ 0.98
PGBD2-202ENST00000355360 HMGXB3Q12766 1538 aa21.12■□□□□ 0.97
PGBD2-202ENST00000355360 KANK4Q5T7N3 995 aaPredicted RBP21.11■□□□□ 0.97
PGBD2-202ENST00000355360 NEUROD1Q13562 356 aa21.09■□□□□ 0.97
PGBD2-202ENST00000355360 PRXQ9BXM0 1461 aa21.08■□□□□ 0.97
PGBD2-202ENST00000355360 ARAP1Q96P48 1450 aa21.06■□□□□ 0.96
PGBD2-202ENST00000355360 CFTRP13569 1480 aa21.05■□□□□ 0.96
PGBD2-202ENST00000355360 ZNF316A6NFI3 1004 aaPredicted RBP21.03■□□□□ 0.96
PGBD2-202ENST00000355360 KIF27Q86VH2 1401 aa21.01■□□□□ 0.95
PGBD2-202ENST00000355360 ERICH3Q5RHP9 1530 aa20.98■□□□□ 0.95
PGBD2-202ENST00000355360 ACIN1Q9UKV3 1341 aaKnown RBP20.97■□□□□ 0.95
PGBD2-202ENST00000355360 ITGAEP38570 1179 aa20.97■□□□□ 0.95
PGBD2-202ENST00000355360 YTHDC1Q96MU7 727 aaKnown RBP20.97■□□□□ 0.95
PGBD2-202ENST00000355360 CUX2O14529 1486 aa20.94■□□□□ 0.94
PGBD2-202ENST00000355360 ARHGAP35Q9NRY4 1499 aa20.89■□□□□ 0.93
PGBD2-202ENST00000355360 P3H3Q8IVL6 736 aa20.88■□□□□ 0.93
PGBD2-202ENST00000355360 MIER1Q8N108 512 aa20.87■□□□□ 0.93
PGBD2-202ENST00000355360 CADPSQ9ULU8 1353 aa20.86■□□□□ 0.93
PGBD2-202ENST00000355360 GTF3C3Q9Y5Q9 886 aa20.86■□□□□ 0.93
PGBD2-202ENST00000355360 IGF1RP08069 1367 aa20.85■□□□□ 0.93
PGBD2-202ENST00000355360 FGD5Q6ZNL6 1462 aa20.84■□□□□ 0.93
PGBD2-202ENST00000355360 CC2D2AQ9P2K1 1620 aa20.83■□□□□ 0.92
PGBD2-202ENST00000355360 ATP1B4Q9UN42 357 aaPredicted RBP20.81■□□□□ 0.92
PGBD2-202ENST00000355360 DHX57Q6P158 1386 aaKnown RBP20.79■□□□□ 0.92
PGBD2-202ENST00000355360 PRDM2Q13029 1718 aa20.79■□□□□ 0.92
PGBD2-202ENST00000355360 CENPBP07199 599 aaPredicted RBP20.78■□□□□ 0.92
PGBD2-202ENST00000355360 CARMIL1Q5VZK9 1371 aa20.78■□□□□ 0.92
PGBD2-202ENST00000355360 NESP48681 1621 aa20.76■□□□□ 0.91
PGBD2-202ENST00000355360 RAD54L2Q9Y4B4 1467 aa20.74■□□□□ 0.91
PGBD2-202ENST00000355360 FANCD2Q9BXW9 1451 aa20.71■□□□□ 0.91
PGBD2-202ENST00000355360 CCNB3Q8WWL7 1395 aa20.7■□□□□ 0.9
PGBD2-202ENST00000355360 RRBP1Q9P2E9 1410 aaKnown RBP20.69■□□□□ 0.9
PGBD2-202ENST00000355360 DNAJC5BQ9UF47 199 aa20.68■□□□□ 0.9
PGBD2-202ENST00000355360 FAM50AQ14320 339 aaKnown RBP20.64■□□□□ 0.89
PGBD2-202ENST00000355360 FHOD3Q2V2M9 1422 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms