RNA–Protein interactions for RNA: ENST00000351948.8

SMC6-201, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,173 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-201ENST00000351948 DCAF8L2P0C7V8 631 aa25.18■■□□□ 1.62
SMC6-201ENST00000351948 NISCHQ9Y2I1 1504 aa24.97■■□□□ 1.59
SMC6-201ENST00000351948 SHROOM4Q9ULL8 1493 aa23.65■■□□□ 1.38
SMC6-201ENST00000351948 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
SMC6-201ENST00000351948 EHMT2Q96KQ7 1210 aa22.81■■□□□ 1.24
SMC6-201ENST00000351948 FAM9AQ8IZU1 332 aaPredicted RBP22.27■■□□□ 1.15
SMC6-201ENST00000351948 TTBK1Q5TCY1 1321 aaPredicted RBP21.89■■□□□ 1.09
SMC6-201ENST00000351948 RANGAP1P46060 587 aaPredicted RBP21.89■■□□□ 1.09
SMC6-201ENST00000351948 ABCC9O60706 1549 aa21.79■■□□□ 1.08
SMC6-201ENST00000351948 TRIM41Q8WV44 630 aa21.78■■□□□ 1.08
SMC6-201ENST00000351948 APLP2Q06481 763 aa21.72■■□□□ 1.07
SMC6-201ENST00000351948 PABPN1Q86U42 306 aaKnown RBP eCLIP21.55■■□□□ 1.04
SMC6-201ENST00000351948 ATP1B4Q9UN42 357 aaPredicted RBP21.47■■□□□ 1.03
SMC6-201ENST00000351948 UBTFP17480 764 aaKnown RBP21.45■■□□□ 1.02
SMC6-201ENST00000351948 PCGF6Q9BYE7 350 aa21.43■■□□□ 1.02
SMC6-201ENST00000351948 PPARGC1BQ86YN6 1023 aaKnown RBP21.25■□□□□ 0.99
SMC6-201ENST00000351948 LOC105371045A0A1W2PR82 267 aa21.08■□□□□ 0.97
SMC6-201ENST00000351948 CHIC1Q5VXU3 224 aa21.07■□□□□ 0.96
SMC6-201ENST00000351948 CCER1Q8TC90 406 aaPredicted RBP20.92■□□□□ 0.94
SMC6-201ENST00000351948 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.81■□□□□ 0.92
SMC6-201ENST00000351948 HNRNPUL2Q1KMD3 747 aaKnown RBP20.81■□□□□ 0.92
SMC6-201ENST00000351948 ITGAEP38570 1179 aa20.76■□□□□ 0.91
SMC6-201ENST00000351948 SCRIBQ14160 1630 aa20.71■□□□□ 0.91
SMC6-201ENST00000351948 ZCCHC6Q5VYS8 1495 aaKnown RBP20.65■□□□□ 0.9
SMC6-201ENST00000351948 MYT1LQ9UL68 1186 aa20.56■□□□□ 0.88
SMC6-201ENST00000351948 TRIM26Q12899 539 aaPredicted RBP20.51■□□□□ 0.87
SMC6-201ENST00000351948 CCDC180Q9P1Z9 1646 aa20.51■□□□□ 0.87
SMC6-201ENST00000351948 FBLN2P98095 1184 aa20.48■□□□□ 0.87
SMC6-201ENST00000351948 ZEB1P37275 1124 aaPredicted RBP20.46■□□□□ 0.87
SMC6-201ENST00000351948 P3H3Q8IVL6 736 aa20.27■□□□□ 0.84
SMC6-201ENST00000351948 ARID3CA6NKF2 412 aa20.26■□□□□ 0.83
SMC6-201ENST00000351948 YTHDC1Q96MU7 727 aaKnown RBP20.23■□□□□ 0.83
SMC6-201ENST00000351948 FAM50AQ14320 339 aaKnown RBP20.23■□□□□ 0.83
SMC6-201ENST00000351948 POLR3GLQ9BT43 218 aa20.19■□□□□ 0.82
SMC6-201ENST00000351948 CSRNP3Q8WYN3 585 aa20.16■□□□□ 0.82
SMC6-201ENST00000351948 RB1CC1Q8TDY2 1594 aa20.16■□□□□ 0.82
SMC6-201ENST00000351948 CNGB1Q14028 1251 aaPredicted RBP20.13■□□□□ 0.81
SMC6-201ENST00000351948 PELP1Q8IZL8 1130 aaKnown RBP20.12■□□□□ 0.81
SMC6-201ENST00000351948 CENPBP07199 599 aaPredicted RBP20.05■□□□□ 0.8
SMC6-201ENST00000351948 HRCP23327 699 aa20.04■□□□□ 0.8
SMC6-201ENST00000351948 TRIM52Q96A61 297 aa19.99■□□□□ 0.79
SMC6-201ENST00000351948 NACADO15069 1562 aa19.95■□□□□ 0.78
SMC6-201ENST00000351948 RSF1Q96T23 1441 aaPredicted RBP19.94■□□□□ 0.78
SMC6-201ENST00000351948 NEUROD1Q13562 356 aa19.91■□□□□ 0.78
SMC6-201ENST00000351948 ZNF777Q9ULD5 760 aaPredicted RBP19.84■□□□□ 0.77
SMC6-201ENST00000351948 CECR2Q9BXF3 1484 aa19.81■□□□□ 0.76
SMC6-201ENST00000351948 SLC4A1APQ9BWU0 796 aaKnown RBP19.79■□□□□ 0.76
SMC6-201ENST00000351948 ZNF326Q5BKZ1 582 aaKnown RBP19.78■□□□□ 0.76
SMC6-201ENST00000351948 BAZ1BQ9UIG0 1483 aaKnown RBP19.73■□□□□ 0.75
SMC6-201ENST00000351948 NEFLP07196 543 aa19.7■□□□□ 0.74
SMC6-201ENST00000351948 CHMP7Q8WUX9 453 aaPredicted RBP19.66■□□□□ 0.74
SMC6-201ENST00000351948 CDK11AQ9UQ88 783 aaPredicted RBP19.59■□□□□ 0.73
SMC6-201ENST00000351948 DCAF1Q9Y4B6 1507 aa19.59■□□□□ 0.73
SMC6-201ENST00000351948 DIEXFQ68CQ4 756 aaKnown RBP19.57■□□□□ 0.72
SMC6-201ENST00000351948 WRNQ14191 1432 aaPredicted RBP eCLIP19.54■□□□□ 0.72
SMC6-201ENST00000351948 BAZ1AQ9NRL2 1556 aaPredicted RBP19.53■□□□□ 0.72
SMC6-201ENST00000351948 MYO15BQ96JP2 1530 aa19.53■□□□□ 0.72
SMC6-201ENST00000351948 CHIC2Q9UKJ5 165 aa19.52■□□□□ 0.72
SMC6-201ENST00000351948 PLPPR3Q6T4P5 718 aa19.5■□□□□ 0.71
SMC6-201ENST00000351948 NPM1P06748 294 aaKnown RBP eCLIP19.49■□□□□ 0.71
SMC6-201ENST00000351948 MROH2BQ7Z745 1585 aa19.47■□□□□ 0.71
SMC6-201ENST00000351948 BCANQ96GW7 911 aa19.42■□□□□ 0.7
SMC6-201ENST00000351948 CLIP1P30622 1438 aa19.42■□□□□ 0.7
SMC6-201ENST00000351948 ERCC6Q03468 1493 aa19.42■□□□□ 0.7
SMC6-201ENST00000351948 ERICH6Q7L0X2 663 aa19.4■□□□□ 0.7
SMC6-201ENST00000351948 KCNH8Q96L42 1107 aa19.38■□□□□ 0.69
SMC6-201ENST00000351948 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.36■□□□□ 0.691e-6■■□□□ 13.6
SMC6-201ENST00000351948 MTUS2Q5JR59 1369 aa19.36■□□□□ 0.69
SMC6-201ENST00000351948 CHGAP10645 457 aaKnown RBP19.35■□□□□ 0.69
SMC6-201ENST00000351948 KIF27Q86VH2 1401 aa19.3■□□□□ 0.68
SMC6-201ENST00000351948 CEP162Q5TB80 1403 aa19.29■□□□□ 0.68
SMC6-201ENST00000351948 CCDC88BA6NC98 1476 aa19.28■□□□□ 0.68
SMC6-201ENST00000351948 ESF1Q9H501 851 aaKnown RBP19.28■□□□□ 0.68
SMC6-201ENST00000351948 GOLGA3Q08378 1498 aa19.27■□□□□ 0.67
SMC6-201ENST00000351948 SOGA1O94964 1423 aa19.25■□□□□ 0.67
SMC6-201ENST00000351948 ZNF316A6NFI3 1004 aaPredicted RBP19.24■□□□□ 0.67
SMC6-201ENST00000351948 SENP3Q9H4L4 574 aaPredicted RBP19.22■□□□□ 0.67
SMC6-201ENST00000351948 RRP7BPQ9NSQ0 103 aa19.22■□□□□ 0.67
SMC6-201ENST00000351948 TSPY4P0CV99 314 aa19.22■□□□□ 0.67
SMC6-201ENST00000351948 TSPY10P0CW01 314 aa19.22■□□□□ 0.67
SMC6-201ENST00000351948 ANP32CO43423 234 aa19.21■□□□□ 0.67
SMC6-201ENST00000351948 EEA1Q15075 1411 aa19.2■□□□□ 0.66
SMC6-201ENST00000351948 ABCC8Q09428 1581 aa19.2■□□□□ 0.66
SMC6-201ENST00000351948 STAG3Q9UJ98 1225 aa19.2■□□□□ 0.66
SMC6-201ENST00000351948 CUX2O14529 1486 aa19.18■□□□□ 0.66
SMC6-201ENST00000351948 WIZO95785 1651 aa19.18■□□□□ 0.66
SMC6-201ENST00000351948 PLEKHD1A6NEE1 506 aa19.17■□□□□ 0.66
SMC6-201ENST00000351948 TONSLQ96HA7 1378 aa19.16■□□□□ 0.66
SMC6-201ENST00000351948 KDM2AQ9Y2K7 1162 aa19.12■□□□□ 0.65
SMC6-201ENST00000351948 CEP164Q9UPV0 1460 aa19.12■□□□□ 0.65
SMC6-201ENST00000351948 SMARCA2P51531 1590 aa19.11■□□□□ 0.65
SMC6-201ENST00000351948 TDRD9Q8NDG6 1382 aaKnown RBP19.11■□□□□ 0.65
SMC6-201ENST00000351948 CARMIL1Q5VZK9 1371 aa19.1■□□□□ 0.65
SMC6-201ENST00000351948 TNIKQ9UKE5 1360 aa19.09■□□□□ 0.65
SMC6-201ENST00000351948 HIRIP3Q9BW71 556 aaPredicted RBP19.08■□□□□ 0.64
SMC6-201ENST00000351948 EIF4G1Q04637 1599 aaKnown RBP19.05■□□□□ 0.64
SMC6-201ENST00000351948 CFDP1Q9UEE9 299 aaPredicted RBP19.04■□□□□ 0.64
SMC6-201ENST00000351948 SLC24A1O60721 1099 aa19.04■□□□□ 0.64
SMC6-201ENST00000351948 ATAD2BQ9ULI0 1458 aa19.02■□□□□ 0.64
SMC6-201ENST00000351948 DDX10Q13206 875 aaKnown RBP19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms