RNA–Protein interactions for RNA: ENST00000349228.8

TNFSF13-202, Transcript of TNF superfamily member 13, humanhuman

TSL 1 (best) BASIC

Gene TNFSF13, Length 2,036 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF13-202ENST00000349228 NISCHQ9Y2I1 1504 aa32.5■■■□□ 2.79
TNFSF13-202ENST00000349228 CCDC180Q9P1Z9 1646 aa27.81■■■□□ 2.04
TNFSF13-202ENST00000349228 ZCCHC6Q5VYS8 1495 aaKnown RBP27.47■■□□□ 1.99
TNFSF13-202ENST00000349228 SHROOM4Q9ULL8 1493 aa27.2■■□□□ 1.94
TNFSF13-202ENST00000349228 DCAF1Q9Y4B6 1507 aa26.88■■□□□ 1.89
TNFSF13-202ENST00000349228 SUPT5HO00267 1087 aaKnown RBP26.7■■□□□ 1.87
TNFSF13-202ENST00000349228 DCAF8L2P0C7V8 631 aa26.61■■□□□ 1.85
TNFSF13-202ENST00000349228 MYO15BQ96JP2 1530 aa26.22■■□□□ 1.79
TNFSF13-202ENST00000349228 CHIC1Q5VXU3 224 aa26.07■■□□□ 1.76
TNFSF13-202ENST00000349228 ABCC9O60706 1549 aa25.87■■□□□ 1.73
TNFSF13-202ENST00000349228 NACADO15069 1562 aa25.75■■□□□ 1.71
TNFSF13-202ENST00000349228 SCRIBQ14160 1630 aa25.73■■□□□ 1.71
TNFSF13-202ENST00000349228 RSF1Q96T23 1441 aaPredicted RBP25.6■■□□□ 1.69
TNFSF13-202ENST00000349228 RB1CC1Q8TDY2 1594 aa25.38■■□□□ 1.65
TNFSF13-202ENST00000349228 CECR2Q9BXF3 1484 aa25.17■■□□□ 1.62
TNFSF13-202ENST00000349228 MROH2BQ7Z745 1585 aa25.13■■□□□ 1.61
TNFSF13-202ENST00000349228 LOC105371045A0A1W2PR82 267 aa25.1■■□□□ 1.61
TNFSF13-202ENST00000349228 HRCP23327 699 aa25.08■■□□□ 1.61
TNFSF13-202ENST00000349228 TRIM41Q8WV44 630 aa25.06■■□□□ 1.6
TNFSF13-202ENST00000349228 BAZ1AQ9NRL2 1556 aaPredicted RBP25.02■■□□□ 1.6
TNFSF13-202ENST00000349228 PCGF6Q9BYE7 350 aa24.98■■□□□ 1.59
TNFSF13-202ENST00000349228 WIZO95785 1651 aa24.94■■□□□ 1.58
TNFSF13-202ENST00000349228 TRIM26Q12899 539 aaPredicted RBP24.79■■□□□ 1.56
TNFSF13-202ENST00000349228 TOP2AP11388 1531 aaKnown RBP24.74■■□□□ 1.55
TNFSF13-202ENST00000349228 SMARCA4P51532 1647 aa24.74■■□□□ 1.55
TNFSF13-202ENST00000349228 UNC13AQ9UPW8 1703 aa24.68■■□□□ 1.54
TNFSF13-202ENST00000349228 EIF4G1Q04637 1599 aaKnown RBP24.66■■□□□ 1.54
TNFSF13-202ENST00000349228 FAM9AQ8IZU1 332 aaPredicted RBP24.59■■□□□ 1.53
TNFSF13-202ENST00000349228 CCDC88BA6NC98 1476 aa24.54■■□□□ 1.52
TNFSF13-202ENST00000349228 SMARCA2P51531 1590 aa24.52■■□□□ 1.52
TNFSF13-202ENST00000349228 BICRAQ9NZM4 1560 aa24.48■■□□□ 1.51
TNFSF13-202ENST00000349228 PEG3Q9GZU2 1588 aa24.41■■□□□ 1.5
TNFSF13-202ENST00000349228 ZEB1P37275 1124 aaPredicted RBP24.37■■□□□ 1.49
TNFSF13-202ENST00000349228 PABPN1Q86U42 306 aaKnown RBP eCLIP24.3■■□□□ 1.48
TNFSF13-202ENST00000349228 EEA1Q15075 1411 aa24.29■■□□□ 1.48
TNFSF13-202ENST00000349228 ABCC8Q09428 1581 aa24.27■■□□□ 1.48
TNFSF13-202ENST00000349228 PPARGC1BQ86YN6 1023 aaKnown RBP24.25■■□□□ 1.47
TNFSF13-202ENST00000349228 EHMT2Q96KQ7 1210 aa24.18■■□□□ 1.46
TNFSF13-202ENST00000349228 ATAD2BQ9ULI0 1458 aa24.15■■□□□ 1.46
TNFSF13-202ENST00000349228 TNIKQ9UKE5 1360 aa24.1■■□□□ 1.45
TNFSF13-202ENST00000349228 WRNQ14191 1432 aaPredicted RBP eCLIP24.1■■□□□ 1.45
TNFSF13-202ENST00000349228 CSRNP3Q8WYN3 585 aa24.08■■□□□ 1.44
TNFSF13-202ENST00000349228 SOGA1O94964 1423 aa24.07■■□□□ 1.44
TNFSF13-202ENST00000349228 BAZ1BQ9UIG0 1483 aaKnown RBP24.06■■□□□ 1.44
TNFSF13-202ENST00000349228 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
TNFSF13-202ENST00000349228 GOLGA3Q08378 1498 aa23.95■■□□□ 1.42
TNFSF13-202ENST00000349228 RUSC2Q8N2Y8 1516 aa23.89■■□□□ 1.42
TNFSF13-202ENST00000349228 SYNJ1O43426 1573 aa23.86■■□□□ 1.41
TNFSF13-202ENST00000349228 CEP164Q9UPV0 1460 aa23.85■■□□□ 1.41
TNFSF13-202ENST00000349228 UBTFP17480 764 aaKnown RBP23.85■■□□□ 1.41
TNFSF13-202ENST00000349228 KIF21BO75037 1637 aa23.83■■□□□ 1.4
TNFSF13-202ENST00000349228 NCAPD3P42695 1498 aa23.8■■□□□ 1.4
TNFSF13-202ENST00000349228 HMGXB3Q12766 1538 aa23.79■■□□□ 1.4
TNFSF13-202ENST00000349228 TOP2BQ02880 1626 aa23.72■■□□□ 1.39
TNFSF13-202ENST00000349228 BIVM-ERCC5R4GMW8 1640 aa23.65■■□□□ 1.38
TNFSF13-202ENST00000349228 CCER1Q8TC90 406 aaPredicted RBP23.64■■□□□ 1.37
TNFSF13-202ENST00000349228 CLIP1P30622 1438 aa23.6■■□□□ 1.37
TNFSF13-202ENST00000349228 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.57■■□□□ 1.36
TNFSF13-202ENST00000349228 VPS8Q8N3P4 1428 aa23.54■■□□□ 1.36
TNFSF13-202ENST00000349228 RAPGEF2Q9Y4G8 1499 aa23.53■■□□□ 1.36
TNFSF13-202ENST00000349228 CFTRP13569 1480 aa23.52■■□□□ 1.36
TNFSF13-202ENST00000349228 ERICH3Q5RHP9 1530 aa23.51■■□□□ 1.35
TNFSF13-202ENST00000349228 PRXQ9BXM0 1461 aa23.47■■□□□ 1.35
TNFSF13-202ENST00000349228 CUX1P39880 1505 aa23.43■■□□□ 1.34
TNFSF13-202ENST00000349228 APLP2Q06481 763 aa23.42■■□□□ 1.34
TNFSF13-202ENST00000349228 TTBK1Q5TCY1 1321 aaPredicted RBP23.41■■□□□ 1.34
TNFSF13-202ENST00000349228 KIF27Q86VH2 1401 aa23.41■■□□□ 1.34
TNFSF13-202ENST00000349228 PRDM2Q13029 1718 aa23.32■■□□□ 1.32
TNFSF13-202ENST00000349228 SLC24A1O60721 1099 aa23.32■■□□□ 1.32
TNFSF13-202ENST00000349228 CADPSQ9ULU8 1353 aa23.27■■□□□ 1.32
TNFSF13-202ENST00000349228 MYT1Q01538 1121 aa23.22■■□□□ 1.31
TNFSF13-202ENST00000349228 ARAP1Q96P48 1450 aa23.21■■□□□ 1.31
TNFSF13-202ENST00000349228 HNRNPUL2Q1KMD3 747 aaKnown RBP23.15■■□□□ 1.3
TNFSF13-202ENST00000349228 PELP1Q8IZL8 1130 aaKnown RBP23.13■■□□□ 1.29
TNFSF13-202ENST00000349228 RANGAP1P46060 587 aaPredicted RBP23.12■■□□□ 1.29
TNFSF13-202ENST00000349228 DIEXFQ68CQ4 756 aaKnown RBP23.12■■□□□ 1.29
TNFSF13-202ENST00000349228 IGF1RP08069 1367 aa23.1■■□□□ 1.29
TNFSF13-202ENST00000349228 CUX2O14529 1486 aa23.1■■□□□ 1.29
TNFSF13-202ENST00000349228 CC2D2AQ9P2K1 1620 aa23.08■■□□□ 1.28
TNFSF13-202ENST00000349228 ZNF316A6NFI3 1004 aaPredicted RBP23.06■■□□□ 1.28
TNFSF13-202ENST00000349228 CLSPNQ9HAW4 1339 aa23.06■■□□□ 1.28
TNFSF13-202ENST00000349228 ARHGAP35Q9NRY4 1499 aa23.04■■□□□ 1.28
TNFSF13-202ENST00000349228 FGD5Q6ZNL6 1462 aa23.03■■□□□ 1.28
TNFSF13-202ENST00000349228 CARMIL1Q5VZK9 1371 aa23.01■■□□□ 1.27
TNFSF13-202ENST00000349228 RRBP1Q9P2E9 1410 aaKnown RBP23■■□□□ 1.27
TNFSF13-202ENST00000349228 FANCD2Q9BXW9 1451 aa22.98■■□□□ 1.27
TNFSF13-202ENST00000349228 MAP3K1Q13233 1512 aa22.98■■□□□ 1.27
TNFSF13-202ENST00000349228 KANK4Q5T7N3 995 aaPredicted RBP22.96■■□□□ 1.27
TNFSF13-202ENST00000349228 DNMBPQ6XZF7 1577 aa22.93■■□□□ 1.26
TNFSF13-202ENST00000349228 ABCA10Q8WWZ4 1543 aa22.88■■□□□ 1.25
TNFSF13-202ENST00000349228 CENPBP07199 599 aaPredicted RBP22.87■■□□□ 1.25
TNFSF13-202ENST00000349228 CCNB3Q8WWL7 1395 aa22.86■■□□□ 1.25
TNFSF13-202ENST00000349228 SCAF1Q9H7N4 1312 aaKnown RBP22.86■■□□□ 1.25
TNFSF13-202ENST00000349228 ACIN1Q9UKV3 1341 aaKnown RBP22.85■■□□□ 1.25
TNFSF13-202ENST00000349228 FHAD1B1AJZ9 1412 aa22.85■■□□□ 1.25
TNFSF13-202ENST00000349228 DHX57Q6P158 1386 aaKnown RBP22.83■■□□□ 1.25
TNFSF13-202ENST00000349228 TOPBP1Q92547 1522 aa22.83■■□□□ 1.25
TNFSF13-202ENST00000349228 TIAM1Q13009 1591 aa22.81■■□□□ 1.24
TNFSF13-202ENST00000349228 POLA1P09884 1462 aaPredicted RBP22.79■■□□□ 1.24
TNFSF13-202ENST00000349228 LAMC3Q9Y6N6 1575 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms