RNA–Protein interactions for RNA: ENST00000347471.8

SMARCC2-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SMARCC2, Length 3,839 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC2-202ENST00000347471 NISCHQ9Y2I1 1504 aa36.58■■■■□ 3.45
SMARCC2-202ENST00000347471 DCAF8L2P0C7V8 631 aa31.72■■■□□ 2.67
SMARCC2-202ENST00000347471 SHROOM4Q9ULL8 1493 aa31.48■■■□□ 2.63
SMARCC2-202ENST00000347471 CCDC180Q9P1Z9 1646 aa31.07■■■□□ 2.56
SMARCC2-202ENST00000347471 ZCCHC6Q5VYS8 1495 aaKnown RBP30.7■■■□□ 2.5
SMARCC2-202ENST00000347471 SUPT5HO00267 1087 aaKnown RBP30.62■■■□□ 2.49
SMARCC2-202ENST00000347471 ABCC9O60706 1549 aa30.25■■■□□ 2.43
SMARCC2-202ENST00000347471 DCAF1Q9Y4B6 1507 aa29.67■■■□□ 2.34
SMARCC2-202ENST00000347471 SCRIBQ14160 1630 aa29.57■■■□□ 2.32
SMARCC2-202ENST00000347471 NACADO15069 1562 aa29.14■■■□□ 2.26
SMARCC2-202ENST00000347471 PABPN1Q86U42 306 aaKnown RBP eCLIP29.04■■■□□ 2.24
SMARCC2-202ENST00000347471 MYO15BQ96JP2 1530 aa29.03■■■□□ 2.24
SMARCC2-202ENST00000347471 CHIC1Q5VXU3 224 aa28.97■■■□□ 2.23
SMARCC2-202ENST00000347471 RB1CC1Q8TDY2 1594 aa28.94■■■□□ 2.22
SMARCC2-202ENST00000347471 CECR2Q9BXF3 1484 aa28.8■■■□□ 2.2
SMARCC2-202ENST00000347471 RSF1Q96T23 1441 aaPredicted RBP28.8■■■□□ 2.2
SMARCC2-202ENST00000347471 EHMT2Q96KQ7 1210 aa28.51■■■□□ 2.16
SMARCC2-202ENST00000347471 MROH2BQ7Z745 1585 aa28.51■■■□□ 2.15
SMARCC2-202ENST00000347471 FAM9AQ8IZU1 332 aaPredicted RBP28.46■■■□□ 2.15
SMARCC2-202ENST00000347471 TRIM41Q8WV44 630 aa28.4■■■□□ 2.14
SMARCC2-202ENST00000347471 LOC105371045A0A1W2PR82 267 aa28.35■■■□□ 2.13
SMARCC2-202ENST00000347471 WIZO95785 1651 aa28.26■■■□□ 2.11
SMARCC2-202ENST00000347471 BAZ1AQ9NRL2 1556 aaPredicted RBP28.16■■■□□ 2.1
SMARCC2-202ENST00000347471 UNC13AQ9UPW8 1703 aa28.14■■■□□ 2.09
SMARCC2-202ENST00000347471 BICRAQ9NZM4 1560 aa28.01■■■□□ 2.07
SMARCC2-202ENST00000347471 SMARCA4P51532 1647 aa27.94■■■□□ 2.06
SMARCC2-202ENST00000347471 CCDC88BA6NC98 1476 aa27.77■■■□□ 2.04
SMARCC2-202ENST00000347471 TOP2AP11388 1531 aaKnown RBP27.71■■■□□ 2.03
SMARCC2-202ENST00000347471 PCGF6Q9BYE7 350 aa27.67■■■□□ 2.02
SMARCC2-202ENST00000347471 BAZ1BQ9UIG0 1483 aaKnown RBP27.59■■■□□ 2.01
SMARCC2-202ENST00000347471 ATAD2BQ9ULI0 1458 aa27.57■■■□□ 2
SMARCC2-202ENST00000347471 ABCC8Q09428 1581 aa27.56■■■□□ 2
SMARCC2-202ENST00000347471 SMARCA2P51531 1590 aa27.54■■■□□ 2
SMARCC2-202ENST00000347471 PPARGC1BQ86YN6 1023 aaKnown RBP27.44■■□□□ 1.98
SMARCC2-202ENST00000347471 TTBK1Q5TCY1 1321 aaPredicted RBP27.34■■□□□ 1.97
SMARCC2-202ENST00000347471 RANGAP1P46060 587 aaPredicted RBP27.33■■□□□ 1.97
SMARCC2-202ENST00000347471 UBTFP17480 764 aaKnown RBP27.32■■□□□ 1.96
SMARCC2-202ENST00000347471 EIF4G1Q04637 1599 aaKnown RBP27.31■■□□□ 1.96
SMARCC2-202ENST00000347471 SOGA1O94964 1423 aa27.23■■□□□ 1.95
SMARCC2-202ENST00000347471 WRNQ14191 1432 aaPredicted RBP eCLIP27.21■■□□□ 1.95
SMARCC2-202ENST00000347471 PEG3Q9GZU2 1588 aa27.18■■□□□ 1.94
SMARCC2-202ENST00000347471 CSRNP3Q8WYN3 585 aa27.14■■□□□ 1.94
SMARCC2-202ENST00000347471 RUSC2Q8N2Y8 1516 aa27.1■■□□□ 1.93
SMARCC2-202ENST00000347471 NCAPD3P42695 1498 aa27.06■■□□□ 1.92
SMARCC2-202ENST00000347471 TRIM26Q12899 539 aaPredicted RBP27.01■■□□□ 1.91
SMARCC2-202ENST00000347471 SYNJ1O43426 1573 aa26.87■■□□□ 1.89
SMARCC2-202ENST00000347471 DNAJC5BQ9UF47 199 aa26.87■■□□□ 1.89
SMARCC2-202ENST00000347471 CC2D2AQ9P2K1 1620 aa26.86■■□□□ 1.89
SMARCC2-202ENST00000347471 HMGXB3Q12766 1538 aa26.85■■□□□ 1.89
SMARCC2-202ENST00000347471 HRCP23327 699 aa26.77■■□□□ 1.88
SMARCC2-202ENST00000347471 CEP162Q5TB80 1403 aa26.72■■□□□ 1.87
SMARCC2-202ENST00000347471 CADPSQ9ULU8 1353 aa26.71■■□□□ 1.87
SMARCC2-202ENST00000347471 EEA1Q15075 1411 aa26.7■■□□□ 1.86
SMARCC2-202ENST00000347471 CFTRP13569 1480 aa26.67■■□□□ 1.86
SMARCC2-202ENST00000347471 GOLGA3Q08378 1498 aa26.63■■□□□ 1.85
SMARCC2-202ENST00000347471 TNIKQ9UKE5 1360 aa26.62■■□□□ 1.85
SMARCC2-202ENST00000347471 NESP48681 1621 aa26.59■■□□□ 1.85
SMARCC2-202ENST00000347471 APLP2Q06481 763 aa26.57■■□□□ 1.84
SMARCC2-202ENST00000347471 CUX1P39880 1505 aa26.55■■□□□ 1.84
SMARCC2-202ENST00000347471 RAPGEF2Q9Y4G8 1499 aa26.54■■□□□ 1.84
SMARCC2-202ENST00000347471 CEP164Q9UPV0 1460 aa26.53■■□□□ 1.84
SMARCC2-202ENST00000347471 TOP2BQ02880 1626 aa26.48■■□□□ 1.83
SMARCC2-202ENST00000347471 CLIP1P30622 1438 aa26.46■■□□□ 1.83
SMARCC2-202ENST00000347471 KIF27Q86VH2 1401 aa26.46■■□□□ 1.83
SMARCC2-202ENST00000347471 FANCD2Q9BXW9 1451 aa26.45■■□□□ 1.83
SMARCC2-202ENST00000347471 CUX2O14529 1486 aa26.44■■□□□ 1.82
SMARCC2-202ENST00000347471 ATP1B4Q9UN42 357 aaPredicted RBP26.39■■□□□ 1.82
SMARCC2-202ENST00000347471 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.38■■□□□ 1.81
SMARCC2-202ENST00000347471 P3H3Q8IVL6 736 aa26.36■■□□□ 1.81
SMARCC2-202ENST00000347471 FGD5Q6ZNL6 1462 aa26.33■■□□□ 1.81
SMARCC2-202ENST00000347471 HNRNPUL2Q1KMD3 747 aaKnown RBP26.3■■□□□ 1.8
SMARCC2-202ENST00000347471 CCER1Q8TC90 406 aaPredicted RBP26.29■■□□□ 1.8
SMARCC2-202ENST00000347471 RAD54L2Q9Y4B4 1467 aa26.28■■□□□ 1.8
SMARCC2-202ENST00000347471 BIVM-ERCC5R4GMW8 1640 aa26.25■■□□□ 1.79
SMARCC2-202ENST00000347471 TDRD9Q8NDG6 1382 aaKnown RBP26.2■■□□□ 1.78
SMARCC2-202ENST00000347471 IGF1RP08069 1367 aa26.19■■□□□ 1.78
SMARCC2-202ENST00000347471 CARMIL1Q5VZK9 1371 aa26.19■■□□□ 1.78
SMARCC2-202ENST00000347471 KIF21BO75037 1637 aa26.19■■□□□ 1.78
SMARCC2-202ENST00000347471 PDS5BQ9NTI5 1447 aa26.14■■□□□ 1.78
SMARCC2-202ENST00000347471 PRXQ9BXM0 1461 aa26.14■■□□□ 1.78
SMARCC2-202ENST00000347471 TOPBP1Q92547 1522 aa26.1■■□□□ 1.77
SMARCC2-202ENST00000347471 VPS8Q8N3P4 1428 aa26.08■■□□□ 1.77
SMARCC2-202ENST00000347471 ITGAEP38570 1179 aa26.08■■□□□ 1.76
SMARCC2-202ENST00000347471 POLA1P09884 1462 aaPredicted RBP26.07■■□□□ 1.76
SMARCC2-202ENST00000347471 ZEB1P37275 1124 aaPredicted RBP26.01■■□□□ 1.75
SMARCC2-202ENST00000347471 KANK4Q5T7N3 995 aaPredicted RBP26.01■■□□□ 1.75
SMARCC2-202ENST00000347471 URB2Q14146 1524 aaKnown RBP25.99■■□□□ 1.75
SMARCC2-202ENST00000347471 DNMBPQ6XZF7 1577 aa25.96■■□□□ 1.75
SMARCC2-202ENST00000347471 LAMC3Q9Y6N6 1575 aa25.95■■□□□ 1.75
SMARCC2-202ENST00000347471 ERICH3Q5RHP9 1530 aa25.93■■□□□ 1.74
SMARCC2-202ENST00000347471 ARAP1Q96P48 1450 aa25.92■■□□□ 1.74
SMARCC2-202ENST00000347471 PRDM2Q13029 1718 aa25.92■■□□□ 1.74
SMARCC2-202ENST00000347471 FBLN2P98095 1184 aa25.9■■□□□ 1.74
SMARCC2-202ENST00000347471 ARID3CA6NKF2 412 aa25.88■■□□□ 1.73
SMARCC2-202ENST00000347471 ERCC6Q03468 1493 aa25.88■■□□□ 1.73
SMARCC2-202ENST00000347471 ARHGAP35Q9NRY4 1499 aa25.82■■□□□ 1.72
SMARCC2-202ENST00000347471 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
SMARCC2-202ENST00000347471 AQRO60306 1485 aaKnown RBP eCLIP25.81■■□□□ 1.721e-7■■■■□ 24.9
SMARCC2-202ENST00000347471 GAPVD1Q14C86 1478 aa25.79■■□□□ 1.72
SMARCC2-202ENST00000347471 KIF21AQ7Z4S6 1674 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms