RNA–Protein interactions for RNA: ENST00000334690.10

TRAPPC11-201, Transcript of trafficking protein particle complex 11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAPPC11, Length 4,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-201ENST00000334690 DCAF8L2P0C7V8 631 aa29.46■■■□□ 2.31
TRAPPC11-201ENST00000334690 NISCHQ9Y2I1 1504 aa29.43■■■□□ 2.3
TRAPPC11-201ENST00000334690 SUPT5HO00267 1087 aaKnown RBP28.4■■■□□ 2.14
TRAPPC11-201ENST00000334690 SHROOM4Q9ULL8 1493 aa27.93■■■□□ 2.06
TRAPPC11-201ENST00000334690 EHMT2Q96KQ7 1210 aa27.02■■□□□ 1.92
TRAPPC11-201ENST00000334690 APLP2Q06481 763 aa26.72■■□□□ 1.87
TRAPPC11-201ENST00000334690 FAM9AQ8IZU1 332 aaPredicted RBP26.66■■□□□ 1.86
TRAPPC11-201ENST00000334690 PCGF6Q9BYE7 350 aa26.65■■□□□ 1.86
TRAPPC11-201ENST00000334690 PELP1Q8IZL8 1130 aaKnown RBP26.51■■□□□ 1.84
TRAPPC11-201ENST00000334690 TRIM41Q8WV44 630 aa26.41■■□□□ 1.82
TRAPPC11-201ENST00000334690 ZEB1P37275 1124 aaPredicted RBP26.32■■□□□ 1.8
TRAPPC11-201ENST00000334690 TTBK1Q5TCY1 1321 aaPredicted RBP26.16■■□□□ 1.78
TRAPPC11-201ENST00000334690 CCER1Q8TC90 406 aaPredicted RBP26.03■■□□□ 1.76
TRAPPC11-201ENST00000334690 CENPBP07199 599 aaPredicted RBP25.98■■□□□ 1.75
TRAPPC11-201ENST00000334690 UBTFP17480 764 aaKnown RBP25.92■■□□□ 1.74
TRAPPC11-201ENST00000334690 RANGAP1P46060 587 aaPredicted RBP25.85■■□□□ 1.73
TRAPPC11-201ENST00000334690 TRIM26Q12899 539 aaPredicted RBP25.74■■□□□ 1.71
TRAPPC11-201ENST00000334690 CHIC1Q5VXU3 224 aa25.71■■□□□ 1.71
TRAPPC11-201ENST00000334690 HRCP23327 699 aa25.59■■□□□ 1.69
TRAPPC11-201ENST00000334690 ATP1B4Q9UN42 357 aaPredicted RBP25.59■■□□□ 1.69
TRAPPC11-201ENST00000334690 PPARGC1BQ86YN6 1023 aaKnown RBP25.45■■□□□ 1.66
TRAPPC11-201ENST00000334690 LOC105371045A0A1W2PR82 267 aa25.45■■□□□ 1.66
TRAPPC11-201ENST00000334690 NEFLP07196 543 aa25.23■■□□□ 1.63
TRAPPC11-201ENST00000334690 YTHDC1Q96MU7 727 aaKnown RBP25.23■■□□□ 1.63
TRAPPC11-201ENST00000334690 ERICH6Q7L0X2 663 aa25.21■■□□□ 1.63
TRAPPC11-201ENST00000334690 MYT1Q01538 1121 aa25.02■■□□□ 1.6
TRAPPC11-201ENST00000334690 HNRNPUL2Q1KMD3 747 aaKnown RBP24.98■■□□□ 1.59
TRAPPC11-201ENST00000334690 ITGAEP38570 1179 aa24.94■■□□□ 1.58
TRAPPC11-201ENST00000334690 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.8■■□□□ 1.56
TRAPPC11-201ENST00000334690 ABCC9O60706 1549 aa24.78■■□□□ 1.56
TRAPPC11-201ENST00000334690 DIEXFQ68CQ4 756 aaKnown RBP24.69■■□□□ 1.54
TRAPPC11-201ENST00000334690 PABPN1Q86U42 306 aaKnown RBP eCLIP24.58■■□□□ 1.53
TRAPPC11-201ENST00000334690 POLR3GLQ9BT43 218 aa24.49■■□□□ 1.51
TRAPPC11-201ENST00000334690 ZCCHC6Q5VYS8 1495 aaKnown RBP24.44■■□□□ 1.5
TRAPPC11-201ENST00000334690 FAM50AQ14320 339 aaKnown RBP24.41■■□□□ 1.5
TRAPPC11-201ENST00000334690 MYT1LQ9UL68 1186 aa24.37■■□□□ 1.49
TRAPPC11-201ENST00000334690 CSRNP3Q8WYN3 585 aa24.36■■□□□ 1.49
TRAPPC11-201ENST00000334690 DAXXQ9UER7 740 aaPredicted RBP24.25■■□□□ 1.47
TRAPPC11-201ENST00000334690 ZNF316A6NFI3 1004 aaPredicted RBP24.22■■□□□ 1.47
TRAPPC11-201ENST00000334690 CNGB1Q14028 1251 aaPredicted RBP24.21■■□□□ 1.47
TRAPPC11-201ENST00000334690 TRIM52Q96A61 297 aa24.19■■□□□ 1.46
TRAPPC11-201ENST00000334690 NEUROD1Q13562 356 aa24.18■■□□□ 1.46
TRAPPC11-201ENST00000334690 DCAF1Q9Y4B6 1507 aa24.17■■□□□ 1.46
TRAPPC11-201ENST00000334690 GTF3C3Q9Y5Q9 886 aa24.13■■□□□ 1.45
TRAPPC11-201ENST00000334690 ANP32CO43423 234 aa24.06■■□□□ 1.44
TRAPPC11-201ENST00000334690 CCDC180Q9P1Z9 1646 aa24.06■■□□□ 1.44
TRAPPC11-201ENST00000334690 SCRIBQ14160 1630 aa24.05■■□□□ 1.44
TRAPPC11-201ENST00000334690 ACIN1Q9UKV3 1341 aaKnown RBP23.95■■□□□ 1.43
TRAPPC11-201ENST00000334690 SLC4A1APQ9BWU0 796 aaKnown RBP23.87■■□□□ 1.41
TRAPPC11-201ENST00000334690 P3H3Q8IVL6 736 aa23.87■■□□□ 1.41
TRAPPC11-201ENST00000334690 RTL5Q5HYW3 569 aaPredicted RBP23.84■■□□□ 1.41
TRAPPC11-201ENST00000334690 ZNF326Q5BKZ1 582 aaKnown RBP23.82■■□□□ 1.4
TRAPPC11-201ENST00000334690 BCANQ96GW7 911 aa23.81■■□□□ 1.4
TRAPPC11-201ENST00000334690 CLSPNQ9HAW4 1339 aa23.8■■□□□ 1.4
TRAPPC11-201ENST00000334690 FBLN2P98095 1184 aa23.76■■□□□ 1.39
TRAPPC11-201ENST00000334690 CDK11AQ9UQ88 783 aaPredicted RBP23.74■■□□□ 1.39
TRAPPC11-201ENST00000334690 RSF1Q96T23 1441 aaPredicted RBP23.65■■□□□ 1.38
TRAPPC11-201ENST00000334690 TONSLQ96HA7 1378 aa23.61■■□□□ 1.37
TRAPPC11-201ENST00000334690 ARID3CA6NKF2 412 aa23.59■■□□□ 1.37
TRAPPC11-201ENST00000334690 MYO15BQ96JP2 1530 aa23.58■■□□□ 1.36
TRAPPC11-201ENST00000334690 EEA1Q15075 1411 aa23.57■■□□□ 1.36
TRAPPC11-201ENST00000334690 CLIP1P30622 1438 aa23.52■■□□□ 1.36
TRAPPC11-201ENST00000334690 ZNF777Q9ULD5 760 aaPredicted RBP23.52■■□□□ 1.36
TRAPPC11-201ENST00000334690 DDX10Q13206 875 aaKnown RBP23.45■■□□□ 1.34
TRAPPC11-201ENST00000334690 RB1CC1Q8TDY2 1594 aa23.44■■□□□ 1.34
TRAPPC11-201ENST00000334690 CEP162Q5TB80 1403 aa23.39■■□□□ 1.34
TRAPPC11-201ENST00000334690 GOLGA3Q08378 1498 aa23.39■■□□□ 1.34
TRAPPC11-201ENST00000334690 FKBP8Q14318 412 aa23.37■■□□□ 1.33
TRAPPC11-201ENST00000334690 NACADO15069 1562 aa23.37■■□□□ 1.33
TRAPPC11-201ENST00000334690 HNRNPUQ00839 825 aaKnown RBP eCLIP23.35■■□□□ 1.33
TRAPPC11-201ENST00000334690 CANXP27824 592 aaKnown RBP23.33■■□□□ 1.33
TRAPPC11-201ENST00000334690 MTUS2Q5JR59 1369 aa23.33■■□□□ 1.32
TRAPPC11-201ENST00000334690 ZBTB47Q9UFB7 747 aaPredicted RBP23.33■■□□□ 1.32
TRAPPC11-201ENST00000334690 ANP32AP39687 249 aaKnown RBP23.31■■□□□ 1.32
TRAPPC11-201ENST00000334690 WRNQ14191 1432 aaPredicted RBP eCLIP23.31■■□□□ 1.32
TRAPPC11-201ENST00000334690 TNIKQ9UKE5 1360 aa23.3■■□□□ 1.32
TRAPPC11-201ENST00000334690 NEFMP07197 916 aa23.29■■□□□ 1.32
TRAPPC11-201ENST00000334690 MIER1Q8N108 512 aa23.26■■□□□ 1.31
TRAPPC11-201ENST00000334690 CHIC2Q9UKJ5 165 aa23.26■■□□□ 1.31
TRAPPC11-201ENST00000334690 FAM9BQ8IZU0 186 aa23.21■■□□□ 1.31
TRAPPC11-201ENST00000334690 CEP164Q9UPV0 1460 aa23.19■■□□□ 1.3
TRAPPC11-201ENST00000334690 SCAF1Q9H7N4 1312 aaKnown RBP23.18■■□□□ 1.3
TRAPPC11-201ENST00000334690 TSPY4P0CV99 314 aa23.17■■□□□ 1.3
TRAPPC11-201ENST00000334690 TSPY10P0CW01 314 aa23.17■■□□□ 1.3
TRAPPC11-201ENST00000334690 BAZ1AQ9NRL2 1556 aaPredicted RBP23.14■■□□□ 1.29
TRAPPC11-201ENST00000334690 TMC1Q8TDI8 760 aa23.14■■□□□ 1.29
TRAPPC11-201ENST00000334690 BAZ1BQ9UIG0 1483 aaKnown RBP23.13■■□□□ 1.29
TRAPPC11-201ENST00000334690 KIF27Q86VH2 1401 aa23.13■■□□□ 1.29
TRAPPC11-201ENST00000334690 MRS2Q9HD23 443 aa23.1■■□□□ 1.29
TRAPPC11-201ENST00000334690 EIF4G2P78344 907 aaKnown RBP eCLIP23.09■■□□□ 1.29
TRAPPC11-201ENST00000334690 NPM2Q86SE8 214 aaKnown RBP23.04■■□□□ 1.28
TRAPPC11-201ENST00000334690 CECR2Q9BXF3 1484 aa23.03■■□□□ 1.28
TRAPPC11-201ENST00000334690 CCDC136Q96JN2 1154 aa23.02■■□□□ 1.28
TRAPPC11-201ENST00000334690 CHGAP10645 457 aaKnown RBP23.01■■□□□ 1.27
TRAPPC11-201ENST00000334690 CHMP7Q8WUX9 453 aaPredicted RBP23.01■■□□□ 1.27
TRAPPC11-201ENST00000334690 RRP7BPQ9NSQ0 103 aa23■■□□□ 1.27
TRAPPC11-201ENST00000334690 NPM1P06748 294 aaKnown RBP eCLIP22.99■■□□□ 1.27
TRAPPC11-201ENST00000334690 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.99■■□□□ 1.27
TRAPPC11-201ENST00000334690 HIRIP3Q9BW71 556 aaPredicted RBP22.99■■□□□ 1.27
TRAPPC11-201ENST00000334690 KDM2AQ9Y2K7 1162 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms