RNA–Protein interactions for RNA: ENST00000323578.12

CHID1-201, Transcript of chitinase domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHID1, Length 3,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHID1-201ENST00000323578 NISCHQ9Y2I1 1504 aa31.73■■■□□ 2.67
CHID1-201ENST00000323578 SHROOM4Q9ULL8 1493 aa28.55■■■□□ 2.16
CHID1-201ENST00000323578 SUPT5HO00267 1087 aaKnown RBP28.19■■■□□ 2.1
CHID1-201ENST00000323578 DCAF8L2P0C7V8 631 aa27.99■■■□□ 2.07
CHID1-201ENST00000323578 CHIC1Q5VXU3 224 aa26.88■■□□□ 1.89
CHID1-201ENST00000323578 PCGF6Q9BYE7 350 aa26.8■■□□□ 1.88
CHID1-201ENST00000323578 ZCCHC6Q5VYS8 1495 aaKnown RBP26.73■■□□□ 1.87
CHID1-201ENST00000323578 MYO15BQ96JP2 1530 aa26.67■■□□□ 1.86
CHID1-201ENST00000323578 LOC105371045A0A1W2PR82 267 aa26.6■■□□□ 1.85
CHID1-201ENST00000323578 EHMT2Q96KQ7 1210 aa26.51■■□□□ 1.83
CHID1-201ENST00000323578 PPARGC1BQ86YN6 1023 aaKnown RBP26.44■■□□□ 1.82
CHID1-201ENST00000323578 HRCP23327 699 aa26.4■■□□□ 1.82
CHID1-201ENST00000323578 CCDC180Q9P1Z9 1646 aa26.26■■□□□ 1.8
CHID1-201ENST00000323578 FAM9AQ8IZU1 332 aaPredicted RBP26.26■■□□□ 1.79
CHID1-201ENST00000323578 TRIM41Q8WV44 630 aa25.88■■□□□ 1.73
CHID1-201ENST00000323578 TRIM26Q12899 539 aaPredicted RBP25.7■■□□□ 1.7
CHID1-201ENST00000323578 SCRIBQ14160 1630 aa25.62■■□□□ 1.69
CHID1-201ENST00000323578 TTBK1Q5TCY1 1321 aaPredicted RBP25.6■■□□□ 1.69
CHID1-201ENST00000323578 DCAF1Q9Y4B6 1507 aa25.49■■□□□ 1.67
CHID1-201ENST00000323578 ABCC9O60706 1549 aa25.46■■□□□ 1.67
CHID1-201ENST00000323578 RSF1Q96T23 1441 aaPredicted RBP25.44■■□□□ 1.66
CHID1-201ENST00000323578 RB1CC1Q8TDY2 1594 aa25.21■■□□□ 1.63
CHID1-201ENST00000323578 CECR2Q9BXF3 1484 aa25.18■■□□□ 1.62
CHID1-201ENST00000323578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.15■■□□□ 1.62
CHID1-201ENST00000323578 PELP1Q8IZL8 1130 aaKnown RBP25.08■■□□□ 1.61
CHID1-201ENST00000323578 ZEB1P37275 1124 aaPredicted RBP25.03■■□□□ 1.6
CHID1-201ENST00000323578 CCER1Q8TC90 406 aaPredicted RBP25.03■■□□□ 1.6
CHID1-201ENST00000323578 MROH2BQ7Z745 1585 aa24.93■■□□□ 1.58
CHID1-201ENST00000323578 RANGAP1P46060 587 aaPredicted RBP24.91■■□□□ 1.58
CHID1-201ENST00000323578 UBTFP17480 764 aaKnown RBP24.84■■□□□ 1.57
CHID1-201ENST00000323578 PABPN1Q86U42 306 aaKnown RBP eCLIP24.84■■□□□ 1.57
CHID1-201ENST00000323578 WIZO95785 1651 aa24.78■■□□□ 1.56
CHID1-201ENST00000323578 SCAF1Q9H7N4 1312 aaKnown RBP24.67■■□□□ 1.54
CHID1-201ENST00000323578 ABCC8Q09428 1581 aa24.57■■□□□ 1.52
CHID1-201ENST00000323578 NACADO15069 1562 aa24.55■■□□□ 1.52
CHID1-201ENST00000323578 HNRNPUL2Q1KMD3 747 aaKnown RBP24.54■■□□□ 1.52
CHID1-201ENST00000323578 CCDC88BA6NC98 1476 aa24.49■■□□□ 1.51
CHID1-201ENST00000323578 YTHDC1Q96MU7 727 aaKnown RBP24.49■■□□□ 1.51
CHID1-201ENST00000323578 DIEXFQ68CQ4 756 aaKnown RBP24.47■■□□□ 1.51
CHID1-201ENST00000323578 SOGA1O94964 1423 aa24.47■■□□□ 1.51
CHID1-201ENST00000323578 CSRNP3Q8WYN3 585 aa24.43■■□□□ 1.5
CHID1-201ENST00000323578 NEUROD1Q13562 356 aa24.4■■□□□ 1.5
CHID1-201ENST00000323578 MYT1Q01538 1121 aa24.39■■□□□ 1.5
CHID1-201ENST00000323578 RUSC2Q8N2Y8 1516 aa24.36■■□□□ 1.49
CHID1-201ENST00000323578 CEP162Q5TB80 1403 aa24.33■■□□□ 1.49
CHID1-201ENST00000323578 BAZ1AQ9NRL2 1556 aaPredicted RBP24.29■■□□□ 1.48
CHID1-201ENST00000323578 GTF3C3Q9Y5Q9 886 aa24.26■■□□□ 1.47
CHID1-201ENST00000323578 APLP2Q06481 763 aa24.26■■□□□ 1.47
CHID1-201ENST00000323578 ACIN1Q9UKV3 1341 aaKnown RBP24.24■■□□□ 1.47
CHID1-201ENST00000323578 CENPBP07199 599 aaPredicted RBP24.16■■□□□ 1.46
CHID1-201ENST00000323578 TOP2AP11388 1531 aaKnown RBP24.08■■□□□ 1.44
CHID1-201ENST00000323578 TNIKQ9UKE5 1360 aa24.07■■□□□ 1.44
CHID1-201ENST00000323578 ZNF316A6NFI3 1004 aaPredicted RBP24.06■■□□□ 1.44
CHID1-201ENST00000323578 SMARCA4P51532 1647 aa24.05■■□□□ 1.44
CHID1-201ENST00000323578 SMARCA2P51531 1590 aa24.05■■□□□ 1.44
CHID1-201ENST00000323578 ITGAEP38570 1179 aa24.05■■□□□ 1.44
CHID1-201ENST00000323578 WRNQ14191 1432 aaPredicted RBP eCLIP24■■□□□ 1.431e-9■■■■■ 46
CHID1-201ENST00000323578 MIER1Q8N108 512 aa23.97■■□□□ 1.43
CHID1-201ENST00000323578 EIF4G1Q04637 1599 aaKnown RBP23.92■■□□□ 1.42
CHID1-201ENST00000323578 GOLGA3Q08378 1498 aa23.9■■□□□ 1.42
CHID1-201ENST00000323578 CLIP1P30622 1438 aa23.89■■□□□ 1.42
CHID1-201ENST00000323578 ATP1B4Q9UN42 357 aaPredicted RBP23.8■■□□□ 1.4
CHID1-201ENST00000323578 EEA1Q15075 1411 aa23.76■■□□□ 1.39
CHID1-201ENST00000323578 RAPGEF2Q9Y4G8 1499 aa23.74■■□□□ 1.39
CHID1-201ENST00000323578 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
CHID1-201ENST00000323578 KANK4Q5T7N3 995 aaPredicted RBP23.7■■□□□ 1.38
CHID1-201ENST00000323578 CEP164Q9UPV0 1460 aa23.69■■□□□ 1.38
CHID1-201ENST00000323578 SYNJ1O43426 1573 aa23.68■■□□□ 1.38
CHID1-201ENST00000323578 BAZ1BQ9UIG0 1483 aaKnown RBP23.67■■□□□ 1.38
CHID1-201ENST00000323578 P3H3Q8IVL6 736 aa23.62■■□□□ 1.37
CHID1-201ENST00000323578 ATAD2BQ9ULI0 1458 aa23.59■■□□□ 1.37
CHID1-201ENST00000323578 VPS8Q8N3P4 1428 aa23.58■■□□□ 1.37
CHID1-201ENST00000323578 BICRAQ9NZM4 1560 aa23.57■■□□□ 1.36
CHID1-201ENST00000323578 FAM50AQ14320 339 aaKnown RBP23.45■■□□□ 1.34
CHID1-201ENST00000323578 HIRIP3Q9BW71 556 aaPredicted RBP23.43■■□□□ 1.34
CHID1-201ENST00000323578 KIF21BO75037 1637 aa23.4■■□□□ 1.34
CHID1-201ENST00000323578 KCNH8Q96L42 1107 aa23.34■■□□□ 1.33
CHID1-201ENST00000323578 BCANQ96GW7 911 aa23.32■■□□□ 1.32
CHID1-201ENST00000323578 DHX57Q6P158 1386 aaKnown RBP23.32■■□□□ 1.32
CHID1-201ENST00000323578 SIN3AQ96ST3 1273 aa23.29■■□□□ 1.32
CHID1-201ENST00000323578 ARAP1Q96P48 1450 aa23.25■■□□□ 1.31
CHID1-201ENST00000323578 DDX10Q13206 875 aaKnown RBP23.24■■□□□ 1.31
CHID1-201ENST00000323578 KIF27Q86VH2 1401 aa23.22■■□□□ 1.31
CHID1-201ENST00000323578 CCNB3Q8WWL7 1395 aa23.17■■□□□ 1.3
CHID1-201ENST00000323578 PEG3Q9GZU2 1588 aa23.15■■□□□ 1.3
CHID1-201ENST00000323578 CUX2O14529 1486 aa23.12■■□□□ 1.29
CHID1-201ENST00000323578 TOP2BQ02880 1626 aa23.12■■□□□ 1.29
CHID1-201ENST00000323578 PRXQ9BXM0 1461 aa23.11■■□□□ 1.29
CHID1-201ENST00000323578 ARID3CA6NKF2 412 aa23.1■■□□□ 1.29
CHID1-201ENST00000323578 CUX1P39880 1505 aa23.1■■□□□ 1.29
CHID1-201ENST00000323578 SUPT16HQ9Y5B9 1047 aaKnown RBP23.09■■□□□ 1.29
CHID1-201ENST00000323578 RAB3GAP2Q9H2M9 1393 aa23.09■■□□□ 1.29
CHID1-201ENST00000323578 TRIM52Q96A61 297 aa23.04■■□□□ 1.28
CHID1-201ENST00000323578 ARHGAP35Q9NRY4 1499 aa23.03■■□□□ 1.28
CHID1-201ENST00000323578 CARMIL1Q5VZK9 1371 aa23.01■■□□□ 1.27
CHID1-201ENST00000323578 IGF1RP08069 1367 aa22.99■■□□□ 1.27
CHID1-201ENST00000323578 CLSPNQ9HAW4 1339 aa22.98■■□□□ 1.27
CHID1-201ENST00000323578 CNGB1Q14028 1251 aaPredicted RBP22.97■■□□□ 1.27
CHID1-201ENST00000323578 FKBP8Q14318 412 aa22.95■■□□□ 1.26
CHID1-201ENST00000323578 PHLDB1Q86UU1 1377 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms