RNA–Protein interactions for RNA: ENST00000316534.8

NPHP1-201, Transcript of nephrocystin 1, humanhuman

TSL 1 (best) BASIC

Gene NPHP1, Length 3,756 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1-201ENST00000316534 NISCHQ9Y2I1 1504 aa16.66■□□□□ 0.26
NPHP1-201ENST00000316534 CCDC180Q9P1Z9 1646 aa14.72□□□□□ -0.05
NPHP1-201ENST00000316534 ZCCHC6Q5VYS8 1495 aaKnown RBP14.09□□□□□ -0.15
NPHP1-201ENST00000316534 DCAF1Q9Y4B6 1507 aa14□□□□□ -0.17
NPHP1-201ENST00000316534 MYO15BQ96JP2 1530 aa13.83□□□□□ -0.2
NPHP1-201ENST00000316534 NACADO15069 1562 aa13.52□□□□□ -0.24
NPHP1-201ENST00000316534 RB1CC1Q8TDY2 1594 aa13.31□□□□□ -0.28
NPHP1-201ENST00000316534 ABCC9O60706 1549 aa13.27□□□□□ -0.28
NPHP1-201ENST00000316534 UNC13AQ9UPW8 1703 aa13.25□□□□□ -0.29
NPHP1-201ENST00000316534 SCRIBQ14160 1630 aa13.19□□□□□ -0.3
NPHP1-201ENST00000316534 SHROOM4Q9ULL8 1493 aa13.13□□□□□ -0.31
NPHP1-201ENST00000316534 BICRAQ9NZM4 1560 aa13.02□□□□□ -0.33
NPHP1-201ENST00000316534 DCAF8L2P0C7V8 631 aa12.95□□□□□ -0.34
NPHP1-201ENST00000316534 RSF1Q96T23 1441 aaPredicted RBP12.88□□□□□ -0.35
NPHP1-201ENST00000316534 BAZ1AQ9NRL2 1556 aaPredicted RBP12.85□□□□□ -0.35
NPHP1-201ENST00000316534 PEG3Q9GZU2 1588 aa12.84□□□□□ -0.35
NPHP1-201ENST00000316534 SMARCA4P51532 1647 aa12.83□□□□□ -0.36
NPHP1-201ENST00000316534 MROH2BQ7Z745 1585 aa12.81□□□□□ -0.36
NPHP1-201ENST00000316534 CECR2Q9BXF3 1484 aa12.8□□□□□ -0.36
NPHP1-201ENST00000316534 WIZO95785 1651 aa12.74□□□□□ -0.37
NPHP1-201ENST00000316534 EIF4G1Q04637 1599 aaKnown RBP12.72□□□□□ -0.37
NPHP1-201ENST00000316534 TOP2AP11388 1531 aaKnown RBP12.68□□□□□ -0.38
NPHP1-201ENST00000316534 SUPT5HO00267 1087 aaKnown RBP12.61□□□□□ -0.39
NPHP1-201ENST00000316534 SMARCA2P51531 1590 aa12.57□□□□□ -0.4
NPHP1-201ENST00000316534 HMGXB3Q12766 1538 aa12.52□□□□□ -0.41
NPHP1-201ENST00000316534 ATAD2BQ9ULI0 1458 aa12.49□□□□□ -0.41
NPHP1-201ENST00000316534 CCDC88BA6NC98 1476 aa12.43□□□□□ -0.42
NPHP1-201ENST00000316534 NCAPD3P42695 1498 aa12.43□□□□□ -0.42
NPHP1-201ENST00000316534 CHIC1Q5VXU3 224 aa12.41□□□□□ -0.42
NPHP1-201ENST00000316534 PRDM2Q13029 1718 aa12.39□□□□□ -0.43
NPHP1-201ENST00000316534 PABPN1Q86U42 306 aaKnown RBP eCLIP12.37□□□□□ -0.43
NPHP1-201ENST00000316534 BAZ1BQ9UIG0 1483 aaKnown RBP12.34□□□□□ -0.43
NPHP1-201ENST00000316534 CC2D2AQ9P2K1 1620 aa12.26□□□□□ -0.45
NPHP1-201ENST00000316534 BIVM-ERCC5R4GMW8 1640 aa12.22□□□□□ -0.45
NPHP1-201ENST00000316534 CFTRP13569 1480 aa12.16□□□□□ -0.46
NPHP1-201ENST00000316534 TOP2BQ02880 1626 aa12.15□□□□□ -0.47
NPHP1-201ENST00000316534 ABCC8Q09428 1581 aa12.14□□□□□ -0.47
NPHP1-201ENST00000316534 SYNJ1O43426 1573 aa12.13□□□□□ -0.47
NPHP1-201ENST00000316534 EEA1Q15075 1411 aa12.04□□□□□ -0.48
NPHP1-201ENST00000316534 WRNQ14191 1432 aaPredicted RBP eCLIP12.04□□□□□ -0.48
NPHP1-201ENST00000316534 LAMC3Q9Y6N6 1575 aa12.02□□□□□ -0.48
NPHP1-201ENST00000316534 KIF21BO75037 1637 aa12□□□□□ -0.49
NPHP1-201ENST00000316534 CUX1P39880 1505 aa12□□□□□ -0.49
NPHP1-201ENST00000316534 CADPSQ9ULU8 1353 aa11.97□□□□□ -0.49
NPHP1-201ENST00000316534 TRIM41Q8WV44 630 aa11.97□□□□□ -0.49
NPHP1-201ENST00000316534 WDR97A6NE52 1622 aa11.95□□□□□ -0.5
NPHP1-201ENST00000316534 DNMBPQ6XZF7 1577 aa11.9□□□□□ -0.5
NPHP1-201ENST00000316534 SOGA1O94964 1423 aa11.88□□□□□ -0.51
NPHP1-201ENST00000316534 ERICH3Q5RHP9 1530 aa11.88□□□□□ -0.51
NPHP1-201ENST00000316534 RUSC2Q8N2Y8 1516 aa11.86□□□□□ -0.51
NPHP1-201ENST00000316534 KIF21AQ7Z4S6 1674 aa11.85□□□□□ -0.51
NPHP1-201ENST00000316534 FANCD2Q9BXW9 1451 aa11.84□□□□□ -0.51
NPHP1-201ENST00000316534 PRXQ9BXM0 1461 aa11.82□□□□□ -0.52
NPHP1-201ENST00000316534 CEP164Q9UPV0 1460 aa11.8□□□□□ -0.52
NPHP1-201ENST00000316534 GOLGA3Q08378 1498 aa11.79□□□□□ -0.52
NPHP1-201ENST00000316534 TNIKQ9UKE5 1360 aa11.79□□□□□ -0.52
NPHP1-201ENST00000316534 TOPBP1Q92547 1522 aa11.79□□□□□ -0.52
NPHP1-201ENST00000316534 ABCA10Q8WWZ4 1543 aa11.78□□□□□ -0.52
NPHP1-201ENST00000316534 NESP48681 1621 aa11.78□□□□□ -0.52
NPHP1-201ENST00000316534 ABCA5Q8WWZ7 1642 aa11.78□□□□□ -0.52
NPHP1-201ENST00000316534 URB2Q14146 1524 aaKnown RBP11.77□□□□□ -0.53
NPHP1-201ENST00000316534 TARBP1Q13395 1621 aaKnown RBP11.76□□□□□ -0.53
NPHP1-201ENST00000316534 FGD5Q6ZNL6 1462 aa11.76□□□□□ -0.53
NPHP1-201ENST00000316534 LOC105371045A0A1W2PR82 267 aa11.76□□□□□ -0.53
NPHP1-201ENST00000316534 CUL7Q14999 1698 aa11.74□□□□□ -0.53
NPHP1-201ENST00000316534 WDR62O43379 1518 aa11.72□□□□□ -0.53
NPHP1-201ENST00000316534 PDS5BQ9NTI5 1447 aa11.72□□□□□ -0.53
NPHP1-201ENST00000316534 POLA1P09884 1462 aaPredicted RBP11.72□□□□□ -0.53
NPHP1-201ENST00000316534 CSRNP3Q8WYN3 585 aa11.71□□□□□ -0.53
NPHP1-201ENST00000316534 KIF27Q86VH2 1401 aa11.71□□□□□ -0.54
NPHP1-201ENST00000316534 THOC2Q8NI27 1593 aaKnown RBP11.7□□□□□ -0.54
NPHP1-201ENST00000316534 RAPGEF2Q9Y4G8 1499 aa11.68□□□□□ -0.54
NPHP1-201ENST00000316534 CEP162Q5TB80 1403 aa11.66□□□□□ -0.54
NPHP1-201ENST00000316534 PBRM1Q86U86 1689 aa11.66□□□□□ -0.54
NPHP1-201ENST00000316534 MRC2Q9UBG0 1479 aa11.65□□□□□ -0.54
NPHP1-201ENST00000316534 CTTNBP2Q8WZ74 1663 aa11.65□□□□□ -0.54
NPHP1-201ENST00000316534 IGF1RP08069 1367 aa11.63□□□□□ -0.55
NPHP1-201ENST00000316534 DNAJC5BQ9UF47 199 aa11.63□□□□□ -0.55
NPHP1-201ENST00000316534 CUX2O14529 1486 aa11.61□□□□□ -0.55
NPHP1-201ENST00000316534 RAD54L2Q9Y4B4 1467 aa11.58□□□□□ -0.56
NPHP1-201ENST00000316534 ARAP1Q96P48 1450 aa11.56□□□□□ -0.56
NPHP1-201ENST00000316534 ADAMTS12P58397 1594 aa11.55□□□□□ -0.56
NPHP1-201ENST00000316534 FAM9AQ8IZU1 332 aaPredicted RBP11.55□□□□□ -0.56
NPHP1-201ENST00000316534 SAMD9Q5K651 1589 aa11.55□□□□□ -0.56
NPHP1-201ENST00000316534 IFT140Q96RY7 1462 aa11.54□□□□□ -0.56
NPHP1-201ENST00000316534 MAP3K1Q13233 1512 aa11.53□□□□□ -0.56
NPHP1-201ENST00000316534 VPS8Q8N3P4 1428 aa11.53□□□□□ -0.56
NPHP1-201ENST00000316534 EFCAB5A4FU69 1503 aa11.52□□□□□ -0.56
NPHP1-201ENST00000316534 CLIP1P30622 1438 aa11.51□□□□□ -0.57
NPHP1-201ENST00000316534 GAPVD1Q14C86 1478 aa11.5□□□□□ -0.57
NPHP1-201ENST00000316534 ARHGAP35Q9NRY4 1499 aa11.5□□□□□ -0.57
NPHP1-201ENST00000316534 CFAP43Q8NDM7 1665 aa11.49□□□□□ -0.57
NPHP1-201ENST00000316534 EIF4G3O43432 1585 aaKnown RBP11.49□□□□□ -0.57
NPHP1-201ENST00000316534 CARMIL1Q5VZK9 1371 aa11.49□□□□□ -0.57
NPHP1-201ENST00000316534 AQRO60306 1485 aaKnown RBP eCLIP11.46□□□□□ -0.58
NPHP1-201ENST00000316534 TRIM26Q12899 539 aaPredicted RBP11.43□□□□□ -0.58
NPHP1-201ENST00000316534 GRIN2BQ13224 1484 aa11.43□□□□□ -0.58
NPHP1-201ENST00000316534 LRRIQ1Q96JM4 1722 aa11.42□□□□□ -0.58
NPHP1-201ENST00000316534 FHAD1B1AJZ9 1412 aa11.42□□□□□ -0.58
NPHP1-201ENST00000316534 UGGT2Q9NYU1 1516 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms