RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 AEBP2Q6ZN18 517 aaPredicted RBP25.17■■□□□ 1.62
CKS1B-201ENST00000308987 CHIC1Q5VXU3 224 aa23.51■■□□□ 1.35
CKS1B-201ENST00000308987 SENP3Q9H4L4 574 aaPredicted RBP21.48■■□□□ 1.03
CKS1B-201ENST00000308987 PHF23Q9BUL5 403 aaPredicted RBP21.19■□□□□ 0.98
CKS1B-201ENST00000308987 FOXD1Q16676 465 aa20.1■□□□□ 0.81
CKS1B-201ENST00000308987 POTEDQ86YR6 584 aa19.13■□□□□ 0.65
CKS1B-201ENST00000308987 MSH5O43196 834 aa18.91■□□□□ 0.62
CKS1B-201ENST00000308987 PIAS4Q8N2W9 510 aaPredicted RBP18.67■□□□□ 0.58
CKS1B-201ENST00000308987 PLPPR3Q6T4P5 718 aa18.6■□□□□ 0.57
CKS1B-201ENST00000308987 PPP6R1Q9UPN7 881 aa18.54■□□□□ 0.56
CKS1B-201ENST00000308987 ADRA2BP18089 450 aa18.45■□□□□ 0.54
CKS1B-201ENST00000308987 MAPK8IP2Q13387 824 aaPredicted RBP17.08■□□□□ 0.32
CKS1B-201ENST00000308987 DMRT2Q9Y5R5 561 aa16.99■□□□□ 0.31
CKS1B-201ENST00000308987 SCAF1Q9H7N4 1312 aaKnown RBP16.84■□□□□ 0.29
CKS1B-201ENST00000308987 CACNB1Q02641 598 aaPredicted RBP16.49■□□□□ 0.23
CKS1B-201ENST00000308987 DCAF8L1A6NGE4 600 aa16.33■□□□□ 0.2
CKS1B-201ENST00000308987 PPP4R3CPQ6ZMV5 832 aa16.28■□□□□ 0.2
CKS1B-201ENST00000308987 HOXD11P31277 338 aaPredicted RBP16.22■□□□□ 0.19
CKS1B-201ENST00000308987 RNF39Q9H2S5 420 aa16.13■□□□□ 0.17
CKS1B-201ENST00000308987 CNKSR2Q8WXI2 1034 aa16.05■□□□□ 0.16
CKS1B-201ENST00000308987 RNF216Q9NWF9 866 aaPredicted RBP15.99■□□□□ 0.15
CKS1B-201ENST00000308987 C1QBPQ07021 282 aaKnown RBP15.86■□□□□ 0.13
CKS1B-201ENST00000308987 DNAJC5BQ9UF47 199 aa15.7■□□□□ 0.1
CKS1B-201ENST00000308987 NCBP3Q53F19 620 aaKnown RBP15.52■□□□□ 0.08
CKS1B-201ENST00000308987 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.47■□□□□ 0.07
CKS1B-201ENST00000308987 NPM3O75607 178 aaKnown RBP15.31■□□□□ 0.04
CKS1B-201ENST00000308987 U3KPZ7 1027 aaPredicted RBP15.09■□□□□ 0.01
CKS1B-201ENST00000308987 SPINK5Q9NQ38 1064 aaPredicted RBP15.01□□□□□ -0.01
CKS1B-201ENST00000308987 DSG3P32926 999 aa14.99□□□□□ -0.01
CKS1B-201ENST00000308987 CAPN15O75808 1086 aa14.98□□□□□ -0.01
CKS1B-201ENST00000308987 POTEHQ6S545 545 aa14.91□□□□□ -0.02
CKS1B-201ENST00000308987 SLC4A2P04920 1241 aa14.74□□□□□ -0.05
CKS1B-201ENST00000308987 KCNA4P22459 653 aa14.71□□□□□ -0.05
CKS1B-201ENST00000308987 TRHP20396 242 aaPredicted RBP14.66□□□□□ -0.06
CKS1B-201ENST00000308987 ABCB7O75027 752 aa14.61□□□□□ -0.07
CKS1B-201ENST00000308987 APLP2Q06481 763 aa14.59□□□□□ -0.07
CKS1B-201ENST00000308987 ZNF219Q9P2Y4 722 aaPredicted RBP14.58□□□□□ -0.08
CKS1B-201ENST00000308987 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.5□□□□□ -0.09
CKS1B-201ENST00000308987 HNRNPUL2Q1KMD3 747 aaKnown RBP14.5□□□□□ -0.09
CKS1B-201ENST00000308987 SAMD1Q6SPF0 538 aaPredicted RBP14.41□□□□□ -0.1
CKS1B-201ENST00000308987 RBM42Q9BTD8 480 aaKnown RBP14.27□□□□□ -0.13
CKS1B-201ENST00000308987 POLA2Q14181 598 aa14.19□□□□□ -0.14
CKS1B-201ENST00000308987 MYCNP04198 464 aaPredicted RBP14.15□□□□□ -0.14
CKS1B-201ENST00000308987 CHRDL2Q6WN34 429 aa14.14□□□□□ -0.15
CKS1B-201ENST00000308987 ATF5Q9Y2D1 282 aaPredicted RBP13.9□□□□□ -0.18
CKS1B-201ENST00000308987 AKT1S1Q96B36 256 aa13.89□□□□□ -0.19
CKS1B-201ENST00000308987 ZBTB12Q9Y330 459 aaPredicted RBP13.82□□□□□ -0.2
CKS1B-201ENST00000308987 FOXD4L1Q9NU39 408 aa13.81□□□□□ -0.2
CKS1B-201ENST00000308987 SP7Q8TDD2 431 aaPredicted RBP13.8□□□□□ -0.2
CKS1B-201ENST00000308987 SLC4A1APQ9BWU0 796 aaKnown RBP13.79□□□□□ -0.2
CKS1B-201ENST00000308987 REM2Q8IYK8 340 aaPredicted RBP13.78□□□□□ -0.2
CKS1B-201ENST00000308987 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
CKS1B-201ENST00000308987 PIP4P2Q8N4L2 257 aa13.73□□□□□ -0.21
CKS1B-201ENST00000308987 PITPNM1O00562 1244 aa13.62□□□□□ -0.23
CKS1B-201ENST00000308987 HAX1O00165 279 aa13.59□□□□□ -0.23
CKS1B-201ENST00000308987 FXR2P51116 673 aaKnown RBP eCLIP13.58□□□□□ -0.24
CKS1B-201ENST00000308987 ZBTB22O15209 634 aa13.51□□□□□ -0.25
CKS1B-201ENST00000308987 ATXN8OSP0DMR3 200 aa13.42□□□□□ -0.26
CKS1B-201ENST00000308987 EVX2Q03828 476 aa13.42□□□□□ -0.26
CKS1B-201ENST00000308987 SPDYE2BA6NHP3 402 aa13.38□□□□□ -0.27
CKS1B-201ENST00000308987 SPDYE6P0CI01 402 aa13.38□□□□□ -0.27
CKS1B-201ENST00000308987 SPDYE2Q495Y8 402 aa13.38□□□□□ -0.27
CKS1B-201ENST00000308987 FBLN2P98095 1184 aa13.34□□□□□ -0.27
CKS1B-201ENST00000308987 PRKAR2AP13861 404 aaKnown RBP13.27□□□□□ -0.29
CKS1B-201ENST00000308987 CLEC11AQ9Y240 323 aa13.26□□□□□ -0.29
CKS1B-201ENST00000308987 SPDYE1Q8NFV5 336 aaPredicted RBP13.24□□□□□ -0.29
CKS1B-201ENST00000308987 MKRN4PQ13434 485 aaPredicted RBP13.23□□□□□ -0.29
CKS1B-201ENST00000308987 ZNF692Q9BU19 519 aaPredicted RBP13.19□□□□□ -0.3
CKS1B-201ENST00000308987 C19orf67A6NJJ6 358 aa13.16□□□□□ -0.3
CKS1B-201ENST00000308987 SSUH2Q9Y2M2 353 aa13.16□□□□□ -0.3
CKS1B-201ENST00000308987 GABBR2O75899 941 aa13.08□□□□□ -0.32
CKS1B-201ENST00000308987 CHADLQ6NUI6 762 aa13.06□□□□□ -0.32
CKS1B-201ENST00000308987 PRR29P0C7W0 189 aa12.99□□□□□ -0.33
CKS1B-201ENST00000308987 PABPN1Q86U42 306 aaKnown RBP eCLIP12.98□□□□□ -0.33
CKS1B-201ENST00000308987 LHX8Q68G74 356 aa12.95□□□□□ -0.34
CKS1B-201ENST00000308987 CD44P16070 742 aaKnown RBP12.82□□□□□ -0.36
CKS1B-201ENST00000308987 FARP1Q9Y4F1 1045 aaPredicted RBP12.82□□□□□ -0.36
CKS1B-201ENST00000308987 POTEIP0CG38 1075 aa12.8□□□□□ -0.36
CKS1B-201ENST00000308987 CLCN6P51797 869 aa12.69□□□□□ -0.38
CKS1B-201ENST00000308987 DCBLD2Q96PD2 775 aa12.63□□□□□ -0.39
CKS1B-201ENST00000308987 ZRANB1Q9UGI0 708 aa12.6□□□□□ -0.39
CKS1B-201ENST00000308987 ZNF579Q8NAF0 562 aaKnown RBP12.59□□□□□ -0.39
CKS1B-201ENST00000308987 CREBZFQ9NS37 354 aa12.58□□□□□ -0.4
CKS1B-201ENST00000308987 CSRNP3Q8WYN3 585 aa12.56□□□□□ -0.4
CKS1B-201ENST00000308987 STAG3Q9UJ98 1225 aa12.52□□□□□ -0.41
CKS1B-201ENST00000308987 GALR2O43603 387 aaPredicted RBP12.49□□□□□ -0.41
CKS1B-201ENST00000308987 PLSCR2Q9NRY7 297 aa12.43□□□□□ -0.42
CKS1B-201ENST00000308987 SPDYE4A6NLX3 237 aa12.4□□□□□ -0.42
CKS1B-201ENST00000308987 OTUD5Q96G74 571 aa12.39□□□□□ -0.43
CKS1B-201ENST00000308987 PHF12Q96QT6 1004 aa12.39□□□□□ -0.43
CKS1B-201ENST00000308987 POTEB2H3BUK9 544 aa12.38□□□□□ -0.43
CKS1B-201ENST00000308987 PAK3O75914 559 aaPredicted RBP12.38□□□□□ -0.43
CKS1B-201ENST00000308987 NPM1P06748 294 aaKnown RBP eCLIP12.32□□□□□ -0.44
CKS1B-201ENST00000308987 MNX1P50219 401 aaPredicted RBP12.31□□□□□ -0.44
CKS1B-201ENST00000308987 PELP1Q8IZL8 1130 aaKnown RBP12.31□□□□□ -0.44
CKS1B-201ENST00000308987 MS4A3Q96HJ5 214 aa12.21□□□□□ -0.45
CKS1B-201ENST00000308987 POTEMA6NI47 508 aa12.2□□□□□ -0.46
CKS1B-201ENST00000308987 ASTLQ6HA08 431 aaPredicted RBP12.19□□□□□ -0.46
CKS1B-201ENST00000308987 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
CKS1B-201ENST00000308987 ATMINO43313 823 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms