RNA–Protein interactions for RNA: ENST00000308873.10

RUNX3-201, Transcript of runt related transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RUNX3, Length 3,861 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-201ENST00000308873 NISCHQ9Y2I1 1504 aa28.4■■■□□ 2.14
RUNX3-201ENST00000308873 SHROOM4Q9ULL8 1493 aa25.83■■□□□ 1.72
RUNX3-201ENST00000308873 SUPT5HO00267 1087 aaKnown RBP25.63■■□□□ 1.69
RUNX3-201ENST00000308873 DCAF8L2P0C7V8 631 aa25.2■■□□□ 1.62
RUNX3-201ENST00000308873 PCGF6Q9BYE7 350 aa24.69■■□□□ 1.54
RUNX3-201ENST00000308873 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
RUNX3-201ENST00000308873 HRCP23327 699 aa24.44■■□□□ 1.5
RUNX3-201ENST00000308873 PPARGC1BQ86YN6 1023 aaKnown RBP24.39■■□□□ 1.49
RUNX3-201ENST00000308873 MYO15BQ96JP2 1530 aa24.24■■□□□ 1.47
RUNX3-201ENST00000308873 LOC105371045A0A1W2PR82 267 aa24.22■■□□□ 1.47
RUNX3-201ENST00000308873 EHMT2Q96KQ7 1210 aa24.12■■□□□ 1.45
RUNX3-201ENST00000308873 ZCCHC6Q5VYS8 1495 aaKnown RBP23.96■■□□□ 1.43
RUNX3-201ENST00000308873 FAM9AQ8IZU1 332 aaPredicted RBP23.88■■□□□ 1.41
RUNX3-201ENST00000308873 TRIM26Q12899 539 aaPredicted RBP23.63■■□□□ 1.37
RUNX3-201ENST00000308873 TRIM41Q8WV44 630 aa23.54■■□□□ 1.36
RUNX3-201ENST00000308873 TTBK1Q5TCY1 1321 aaPredicted RBP23.35■■□□□ 1.33
RUNX3-201ENST00000308873 CCDC180Q9P1Z9 1646 aa23.35■■□□□ 1.33
RUNX3-201ENST00000308873 DCAF1Q9Y4B6 1507 aa23.35■■□□□ 1.33
RUNX3-201ENST00000308873 ZEB1P37275 1124 aaPredicted RBP23.19■■□□□ 1.3
RUNX3-201ENST00000308873 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.06■■□□□ 1.28
RUNX3-201ENST00000308873 CCER1Q8TC90 406 aaPredicted RBP23.04■■□□□ 1.28
RUNX3-201ENST00000308873 SCAF1Q9H7N4 1312 aaKnown RBP22.94■■□□□ 1.26
RUNX3-201ENST00000308873 SCRIBQ14160 1630 aa22.88■■□□□ 1.25
RUNX3-201ENST00000308873 RSF1Q96T23 1441 aaPredicted RBP22.87■■□□□ 1.25
RUNX3-201ENST00000308873 PELP1Q8IZL8 1130 aaKnown RBP22.7■■□□□ 1.22
RUNX3-201ENST00000308873 YTHDC1Q96MU7 727 aaKnown RBP22.67■■□□□ 1.22
RUNX3-201ENST00000308873 RB1CC1Q8TDY2 1594 aa22.66■■□□□ 1.22
RUNX3-201ENST00000308873 DIEXFQ68CQ4 756 aaKnown RBP22.61■■□□□ 1.21
RUNX3-201ENST00000308873 ABCC9O60706 1549 aa22.61■■□□□ 1.21
RUNX3-201ENST00000308873 NEUROD1Q13562 356 aa22.6■■□□□ 1.21
RUNX3-201ENST00000308873 RANGAP1P46060 587 aaPredicted RBP22.59■■□□□ 1.21
RUNX3-201ENST00000308873 UBTFP17480 764 aaKnown RBP22.59■■□□□ 1.21
RUNX3-201ENST00000308873 GTF3C3Q9Y5Q9 886 aa22.56■■□□□ 1.2
RUNX3-201ENST00000308873 CENPBP07199 599 aaPredicted RBP22.53■■□□□ 1.2
RUNX3-201ENST00000308873 ACIN1Q9UKV3 1341 aaKnown RBP22.53■■□□□ 1.2
RUNX3-201ENST00000308873 CECR2Q9BXF3 1484 aa22.51■■□□□ 1.19
RUNX3-201ENST00000308873 HNRNPUL2Q1KMD3 747 aaKnown RBP22.42■■□□□ 1.18
RUNX3-201ENST00000308873 MROH2BQ7Z745 1585 aa22.3■■□□□ 1.16
RUNX3-201ENST00000308873 APLP2Q06481 763 aa22.19■■□□□ 1.14
RUNX3-201ENST00000308873 ZNF316A6NFI3 1004 aaPredicted RBP22.16■■□□□ 1.14
RUNX3-201ENST00000308873 WIZO95785 1651 aa22.16■■□□□ 1.14
RUNX3-201ENST00000308873 CSRNP3Q8WYN3 585 aa22.13■■□□□ 1.13
RUNX3-201ENST00000308873 PABPN1Q86U42 306 aaKnown RBP eCLIP22.11■■□□□ 1.13
RUNX3-201ENST00000308873 ABCC8Q09428 1581 aa22.09■■□□□ 1.13
RUNX3-201ENST00000308873 CEP162Q5TB80 1403 aa22.09■■□□□ 1.13
RUNX3-201ENST00000308873 SOGA1O94964 1423 aa22.07■■□□□ 1.12
RUNX3-201ENST00000308873 CCDC88BA6NC98 1476 aa22.07■■□□□ 1.12
RUNX3-201ENST00000308873 MIER1Q8N108 512 aa22.06■■□□□ 1.12
RUNX3-201ENST00000308873 RUSC2Q8N2Y8 1516 aa21.91■■□□□ 1.1
RUNX3-201ENST00000308873 ITGAEP38570 1179 aa21.9■■□□□ 1.1
RUNX3-201ENST00000308873 NACADO15069 1562 aa21.84■■□□□ 1.09
RUNX3-201ENST00000308873 TNIKQ9UKE5 1360 aa21.84■■□□□ 1.09
RUNX3-201ENST00000308873 BAZ1AQ9NRL2 1556 aaPredicted RBP21.76■■□□□ 1.07
RUNX3-201ENST00000308873 WRNQ14191 1432 aaPredicted RBP eCLIP21.7■■□□□ 1.06
RUNX3-201ENST00000308873 CLIP1P30622 1438 aa21.67■■□□□ 1.06
RUNX3-201ENST00000308873 GOLGA3Q08378 1498 aa21.66■■□□□ 1.06
RUNX3-201ENST00000308873 ATP1B4Q9UN42 357 aaPredicted RBP21.6■■□□□ 1.05
RUNX3-201ENST00000308873 BCANQ96GW7 911 aa21.59■■□□□ 1.05
RUNX3-201ENST00000308873 MYT1Q01538 1121 aa21.58■■□□□ 1.04
RUNX3-201ENST00000308873 TOP2AP11388 1531 aaKnown RBP21.58■■□□□ 1.04
RUNX3-201ENST00000308873 EEA1Q15075 1411 aa21.54■■□□□ 1.04
RUNX3-201ENST00000308873 SMARCA2P51531 1590 aa21.52■■□□□ 1.04
RUNX3-201ENST00000308873 SMARCA4P51532 1647 aa21.46■■□□□ 1.03
RUNX3-201ENST00000308873 KANK4Q5T7N3 995 aaPredicted RBP21.45■■□□□ 1.02
RUNX3-201ENST00000308873 CEP164Q9UPV0 1460 aa21.45■■□□□ 1.02
RUNX3-201ENST00000308873 EIF4G1Q04637 1599 aaKnown RBP21.42■■□□□ 1.02
RUNX3-201ENST00000308873 RAPGEF2Q9Y4G8 1499 aa21.4■■□□□ 1.02
RUNX3-201ENST00000308873 VPS8Q8N3P4 1428 aa21.4■■□□□ 1.02
RUNX3-201ENST00000308873 SUPT16HQ9Y5B9 1047 aaKnown RBP21.39■■□□□ 1.01
RUNX3-201ENST00000308873 HIRIP3Q9BW71 556 aaPredicted RBP21.38■■□□□ 1.01
RUNX3-201ENST00000308873 KCNH8Q96L42 1107 aa21.37■■□□□ 1.01
RUNX3-201ENST00000308873 FAM50AQ14320 339 aaKnown RBP21.34■■□□□ 1.01
RUNX3-201ENST00000308873 P3H3Q8IVL6 736 aa21.32■■□□□ 1
RUNX3-201ENST00000308873 DDX10Q13206 875 aaKnown RBP21.31■■□□□ 1
RUNX3-201ENST00000308873 DHX57Q6P158 1386 aaKnown RBP21.25■□□□□ 0.99
RUNX3-201ENST00000308873 FKBP8Q14318 412 aa21.23■□□□□ 0.99
RUNX3-201ENST00000308873 SYNJ1O43426 1573 aa21.23■□□□□ 0.99
RUNX3-201ENST00000308873 TRIM52Q96A61 297 aa21.2■□□□□ 0.98
RUNX3-201ENST00000308873 SIN3AQ96ST3 1273 aa21.2■□□□□ 0.98
RUNX3-201ENST00000308873 NEFLP07196 543 aa21.18■□□□□ 0.98
RUNX3-201ENST00000308873 BAZ1BQ9UIG0 1483 aaKnown RBP21.17■□□□□ 0.98
RUNX3-201ENST00000308873 KIF21BO75037 1637 aa21.14■□□□□ 0.97
RUNX3-201ENST00000308873 TSHZ2Q9NRE2 1034 aa21.12■□□□□ 0.97
RUNX3-201ENST00000308873 CCNB3Q8WWL7 1395 aa21.06■□□□□ 0.96
RUNX3-201ENST00000308873 CLSPNQ9HAW4 1339 aa21.06■□□□□ 0.96
RUNX3-201ENST00000308873 ATAD2BQ9ULI0 1458 aa21.03■□□□□ 0.96
RUNX3-201ENST00000308873 CNGB1Q14028 1251 aaPredicted RBP21.03■□□□□ 0.96
RUNX3-201ENST00000308873 RAB3GAP2Q9H2M9 1393 aa21■□□□□ 0.95
RUNX3-201ENST00000308873 ANP32CO43423 234 aa20.99■□□□□ 0.95
RUNX3-201ENST00000308873 IRX6P78412 446 aaPredicted RBP20.99■□□□□ 0.95
RUNX3-201ENST00000308873 ARAP1Q96P48 1450 aa20.97■□□□□ 0.95
RUNX3-201ENST00000308873 KIF27Q86VH2 1401 aa20.93■□□□□ 0.94
RUNX3-201ENST00000308873 ANP32EQ9BTT0 268 aa20.92■□□□□ 0.94
RUNX3-201ENST00000308873 UNC13AQ9UPW8 1703 aa20.91■□□□□ 0.94
RUNX3-201ENST00000308873 HNRNPUQ00839 825 aaKnown RBP eCLIP20.83■□□□□ 0.93
RUNX3-201ENST00000308873 ERICH6Q7L0X2 663 aa20.83■□□□□ 0.93
RUNX3-201ENST00000308873 BICRAQ9NZM4 1560 aa20.83■□□□□ 0.93
RUNX3-201ENST00000308873 ARID3CA6NKF2 412 aa20.82■□□□□ 0.92
RUNX3-201ENST00000308873 PRXQ9BXM0 1461 aa20.79■□□□□ 0.92
RUNX3-201ENST00000308873 SETD5Q9C0A6 1442 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms