RNA–Protein interactions for RNA: ENST00000301280.9

CHAF1A-201, Transcript of chromatin assembly factor 1 subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHAF1A, Length 3,339 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHAF1A-201ENST00000301280 NISCHQ9Y2I1 1504 aa32.72■■■□□ 2.83
CHAF1A-201ENST00000301280 CCDC180Q9P1Z9 1646 aa28.31■■■□□ 2.12
CHAF1A-201ENST00000301280 SHROOM4Q9ULL8 1493 aa28.16■■■□□ 2.1
CHAF1A-201ENST00000301280 DCAF8L2P0C7V8 631 aa28.1■■■□□ 2.09
CHAF1A-201ENST00000301280 ZCCHC6Q5VYS8 1495 aaKnown RBP27.75■■■□□ 2.03
CHAF1A-201ENST00000301280 SUPT5HO00267 1087 aaKnown RBP27.69■■■□□ 2.02
CHAF1A-201ENST00000301280 DCAF1Q9Y4B6 1507 aa27.24■■□□□ 1.95
CHAF1A-201ENST00000301280 MYO15BQ96JP2 1530 aa26.57■■□□□ 1.84
CHAF1A-201ENST00000301280 EHMT2Q96KQ7 1210 aa26.29■■□□□ 1.8
CHAF1A-201ENST00000301280 ABCC9O60706 1549 aa26.22■■□□□ 1.79
CHAF1A-201ENST00000301280 CHIC1Q5VXU3 224 aa26.01■■□□□ 1.75
CHAF1A-201ENST00000301280 NACADO15069 1562 aa25.96■■□□□ 1.75
CHAF1A-201ENST00000301280 LOC105371045A0A1W2PR82 267 aa25.88■■□□□ 1.73
CHAF1A-201ENST00000301280 FAM9AQ8IZU1 332 aaPredicted RBP25.88■■□□□ 1.73
CHAF1A-201ENST00000301280 SCRIBQ14160 1630 aa25.87■■□□□ 1.73
CHAF1A-201ENST00000301280 PCGF6Q9BYE7 350 aa25.81■■□□□ 1.72
CHAF1A-201ENST00000301280 RSF1Q96T23 1441 aaPredicted RBP25.67■■□□□ 1.7
CHAF1A-201ENST00000301280 RB1CC1Q8TDY2 1594 aa25.58■■□□□ 1.69
CHAF1A-201ENST00000301280 UNC13AQ9UPW8 1703 aa25.35■■□□□ 1.65
CHAF1A-201ENST00000301280 TRIM41Q8WV44 630 aa25.35■■□□□ 1.65
CHAF1A-201ENST00000301280 PPARGC1BQ86YN6 1023 aaKnown RBP25.34■■□□□ 1.65
CHAF1A-201ENST00000301280 MROH2BQ7Z745 1585 aa25.29■■□□□ 1.64
CHAF1A-201ENST00000301280 TTBK1Q5TCY1 1321 aaPredicted RBP25.26■■□□□ 1.63
CHAF1A-201ENST00000301280 CECR2Q9BXF3 1484 aa25.26■■□□□ 1.63
CHAF1A-201ENST00000301280 BAZ1AQ9NRL2 1556 aaPredicted RBP25.26■■□□□ 1.63
CHAF1A-201ENST00000301280 EIF4G1Q04637 1599 aaKnown RBP25.22■■□□□ 1.63
CHAF1A-201ENST00000301280 HRCP23327 699 aa25.22■■□□□ 1.63
CHAF1A-201ENST00000301280 WIZO95785 1651 aa25.2■■□□□ 1.62
CHAF1A-201ENST00000301280 PABPN1Q86U42 306 aaKnown RBP eCLIP25.02■■□□□ 1.6
CHAF1A-201ENST00000301280 SMARCA4P51532 1647 aa25.01■■□□□ 1.59
CHAF1A-201ENST00000301280 TOP2AP11388 1531 aaKnown RBP24.95■■□□□ 1.58
CHAF1A-201ENST00000301280 BICRAQ9NZM4 1560 aa24.87■■□□□ 1.57
CHAF1A-201ENST00000301280 PEG3Q9GZU2 1588 aa24.82■■□□□ 1.56
CHAF1A-201ENST00000301280 RANGAP1P46060 587 aaPredicted RBP24.8■■□□□ 1.56
CHAF1A-201ENST00000301280 SMARCA2P51531 1590 aa24.78■■□□□ 1.56
CHAF1A-201ENST00000301280 TRIM26Q12899 539 aaPredicted RBP24.64■■□□□ 1.54
CHAF1A-201ENST00000301280 CCDC88BA6NC98 1476 aa24.61■■□□□ 1.53
CHAF1A-201ENST00000301280 UBTFP17480 764 aaKnown RBP24.45■■□□□ 1.5
CHAF1A-201ENST00000301280 ABCC8Q09428 1581 aa24.39■■□□□ 1.49
CHAF1A-201ENST00000301280 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.36■■□□□ 1.49
CHAF1A-201ENST00000301280 EEA1Q15075 1411 aa24.25■■□□□ 1.47
CHAF1A-201ENST00000301280 ATAD2BQ9ULI0 1458 aa24.24■■□□□ 1.47
CHAF1A-201ENST00000301280 CCER1Q8TC90 406 aaPredicted RBP24.23■■□□□ 1.47
CHAF1A-201ENST00000301280 WRNQ14191 1432 aaPredicted RBP eCLIP24.2■■□□□ 1.46
CHAF1A-201ENST00000301280 SYNJ1O43426 1573 aa24.1■■□□□ 1.45
CHAF1A-201ENST00000301280 KIF21BO75037 1637 aa24.08■■□□□ 1.45
CHAF1A-201ENST00000301280 HMGXB3Q12766 1538 aa24.06■■□□□ 1.44
CHAF1A-201ENST00000301280 BAZ1BQ9UIG0 1483 aaKnown RBP24.05■■□□□ 1.44
CHAF1A-201ENST00000301280 SOGA1O94964 1423 aa24.05■■□□□ 1.44
CHAF1A-201ENST00000301280 TNIKQ9UKE5 1360 aa24.04■■□□□ 1.44
CHAF1A-201ENST00000301280 BIVM-ERCC5R4GMW8 1640 aa24.03■■□□□ 1.44
CHAF1A-201ENST00000301280 HNRNPUL2Q1KMD3 747 aaKnown RBP23.99■■□□□ 1.43
CHAF1A-201ENST00000301280 TOP2BQ02880 1626 aa23.97■■□□□ 1.43
CHAF1A-201ENST00000301280 RUSC2Q8N2Y8 1516 aa23.96■■□□□ 1.43
CHAF1A-201ENST00000301280 PRDM2Q13029 1718 aa23.94■■□□□ 1.42
CHAF1A-201ENST00000301280 ZEB1P37275 1124 aaPredicted RBP23.94■■□□□ 1.42
CHAF1A-201ENST00000301280 CEP162Q5TB80 1403 aa23.93■■□□□ 1.42
CHAF1A-201ENST00000301280 NCAPD3P42695 1498 aa23.91■■□□□ 1.42
CHAF1A-201ENST00000301280 GOLGA3Q08378 1498 aa23.91■■□□□ 1.42
CHAF1A-201ENST00000301280 CSRNP3Q8WYN3 585 aa23.9■■□□□ 1.42
CHAF1A-201ENST00000301280 CEP164Q9UPV0 1460 aa23.82■■□□□ 1.4
CHAF1A-201ENST00000301280 APLP2Q06481 763 aa23.82■■□□□ 1.4
CHAF1A-201ENST00000301280 ITGAEP38570 1179 aa23.72■■□□□ 1.39
CHAF1A-201ENST00000301280 ATP1B4Q9UN42 357 aaPredicted RBP23.71■■□□□ 1.39
CHAF1A-201ENST00000301280 ERICH3Q5RHP9 1530 aa23.7■■□□□ 1.38
CHAF1A-201ENST00000301280 SCAF1Q9H7N4 1312 aaKnown RBP23.69■■□□□ 1.38
CHAF1A-201ENST00000301280 CFTRP13569 1480 aa23.64■■□□□ 1.38
CHAF1A-201ENST00000301280 YTHDC1Q96MU7 727 aaKnown RBP23.64■■□□□ 1.37
CHAF1A-201ENST00000301280 CUX1P39880 1505 aa23.61■■□□□ 1.37
CHAF1A-201ENST00000301280 PRXQ9BXM0 1461 aa23.58■■□□□ 1.37
CHAF1A-201ENST00000301280 RAPGEF2Q9Y4G8 1499 aa23.55■■□□□ 1.36
CHAF1A-201ENST00000301280 VPS8Q8N3P4 1428 aa23.51■■□□□ 1.35
CHAF1A-201ENST00000301280 P3H3Q8IVL6 736 aa23.47■■□□□ 1.35
CHAF1A-201ENST00000301280 CLIP1P30622 1438 aa23.47■■□□□ 1.35
CHAF1A-201ENST00000301280 DIEXFQ68CQ4 756 aaKnown RBP23.42■■□□□ 1.34
CHAF1A-201ENST00000301280 ARAP1Q96P48 1450 aa23.34■■□□□ 1.33
CHAF1A-201ENST00000301280 KIF27Q86VH2 1401 aa23.29■■□□□ 1.32
CHAF1A-201ENST00000301280 CC2D2AQ9P2K1 1620 aa23.28■■□□□ 1.32
CHAF1A-201ENST00000301280 CADPSQ9ULU8 1353 aa23.22■■□□□ 1.31
CHAF1A-201ENST00000301280 PELP1Q8IZL8 1130 aaKnown RBP23.21■■□□□ 1.31
CHAF1A-201ENST00000301280 NEUROD1Q13562 356 aa23.21■■□□□ 1.31
CHAF1A-201ENST00000301280 KANK4Q5T7N3 995 aaPredicted RBP23.16■■□□□ 1.3
CHAF1A-201ENST00000301280 MAP3K1Q13233 1512 aa23.15■■□□□ 1.3
CHAF1A-201ENST00000301280 WDR97A6NE52 1622 aa23.13■■□□□ 1.29
CHAF1A-201ENST00000301280 ARID3CA6NKF2 412 aa23.13■■□□□ 1.29
CHAF1A-201ENST00000301280 ACIN1Q9UKV3 1341 aaKnown RBP23.13■■□□□ 1.29
CHAF1A-201ENST00000301280 ARHGAP35Q9NRY4 1499 aa23.12■■□□□ 1.29
CHAF1A-201ENST00000301280 DNMBPQ6XZF7 1577 aa23.1■■□□□ 1.29
CHAF1A-201ENST00000301280 CUX2O14529 1486 aa23.09■■□□□ 1.29
CHAF1A-201ENST00000301280 FAM50AQ14320 339 aaKnown RBP23.08■■□□□ 1.29
CHAF1A-201ENST00000301280 FGD5Q6ZNL6 1462 aa23.08■■□□□ 1.29
CHAF1A-201ENST00000301280 RRBP1Q9P2E9 1410 aaKnown RBP23.07■■□□□ 1.28
CHAF1A-201ENST00000301280 IGF1RP08069 1367 aa23.06■■□□□ 1.28
CHAF1A-201ENST00000301280 ZNF316A6NFI3 1004 aaPredicted RBP23.04■■□□□ 1.28
CHAF1A-201ENST00000301280 GTF3C3Q9Y5Q9 886 aa23.03■■□□□ 1.28
CHAF1A-201ENST00000301280 CFAP43Q8NDM7 1665 aa23.02■■□□□ 1.28
CHAF1A-201ENST00000301280 ABCA10Q8WWZ4 1543 aa23.01■■□□□ 1.27
CHAF1A-201ENST00000301280 CUL7Q14999 1698 aa23.01■■□□□ 1.27
CHAF1A-201ENST00000301280 FANCD2Q9BXW9 1451 aa22.99■■□□□ 1.27
CHAF1A-201ENST00000301280 LAMC3Q9Y6N6 1575 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms