RNA–Protein interactions for RNA: ENST00000300917.9

SMG8-201, Transcript of SMG8, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG8, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG8-201ENST00000300917 NISCHQ9Y2I1 1504 aa31.16■■■□□ 2.58
SMG8-201ENST00000300917 SHROOM4Q9ULL8 1493 aa26.68■■□□□ 1.86
SMG8-201ENST00000300917 DCAF8L2P0C7V8 631 aa26.58■■□□□ 1.85
SMG8-201ENST00000300917 CCDC180Q9P1Z9 1646 aa26.5■■□□□ 1.83
SMG8-201ENST00000300917 ZCCHC6Q5VYS8 1495 aaKnown RBP26.21■■□□□ 1.79
SMG8-201ENST00000300917 SUPT5HO00267 1087 aaKnown RBP25.94■■□□□ 1.74
SMG8-201ENST00000300917 ABCC9O60706 1549 aa25.46■■□□□ 1.67
SMG8-201ENST00000300917 DCAF1Q9Y4B6 1507 aa25.35■■□□□ 1.65
SMG8-201ENST00000300917 SCRIBQ14160 1630 aa25.11■■□□□ 1.61
SMG8-201ENST00000300917 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
SMG8-201ENST00000300917 CHIC1Q5VXU3 224 aa24.75■■□□□ 1.55
SMG8-201ENST00000300917 NACADO15069 1562 aa24.73■■□□□ 1.55
SMG8-201ENST00000300917 RSF1Q96T23 1441 aaPredicted RBP24.55■■□□□ 1.52
SMG8-201ENST00000300917 CECR2Q9BXF3 1484 aa24.5■■□□□ 1.51
SMG8-201ENST00000300917 RB1CC1Q8TDY2 1594 aa24.5■■□□□ 1.51
SMG8-201ENST00000300917 PABPN1Q86U42 306 aaKnown RBP eCLIP24.39■■□□□ 1.5
SMG8-201ENST00000300917 MROH2BQ7Z745 1585 aa24.29■■□□□ 1.48
SMG8-201ENST00000300917 LOC105371045A0A1W2PR82 267 aa24.18■■□□□ 1.46
SMG8-201ENST00000300917 WIZO95785 1651 aa24.11■■□□□ 1.45
SMG8-201ENST00000300917 FAM9AQ8IZU1 332 aaPredicted RBP24.07■■□□□ 1.44
SMG8-201ENST00000300917 TRIM41Q8WV44 630 aa24.07■■□□□ 1.44
SMG8-201ENST00000300917 EHMT2Q96KQ7 1210 aa24.06■■□□□ 1.44
SMG8-201ENST00000300917 UNC13AQ9UPW8 1703 aa24.03■■□□□ 1.44
SMG8-201ENST00000300917 BAZ1AQ9NRL2 1556 aaPredicted RBP23.94■■□□□ 1.42
SMG8-201ENST00000300917 BICRAQ9NZM4 1560 aa23.84■■□□□ 1.41
SMG8-201ENST00000300917 SMARCA4P51532 1647 aa23.8■■□□□ 1.4
SMG8-201ENST00000300917 PCGF6Q9BYE7 350 aa23.65■■□□□ 1.38
SMG8-201ENST00000300917 CCDC88BA6NC98 1476 aa23.64■■□□□ 1.38
SMG8-201ENST00000300917 TOP2AP11388 1531 aaKnown RBP23.62■■□□□ 1.37
SMG8-201ENST00000300917 SMARCA2P51531 1590 aa23.51■■□□□ 1.35
SMG8-201ENST00000300917 ABCC8Q09428 1581 aa23.5■■□□□ 1.35
SMG8-201ENST00000300917 ATAD2BQ9ULI0 1458 aa23.4■■□□□ 1.34
SMG8-201ENST00000300917 EIF4G1Q04637 1599 aaKnown RBP23.35■■□□□ 1.33
SMG8-201ENST00000300917 BAZ1BQ9UIG0 1483 aaKnown RBP23.35■■□□□ 1.33
SMG8-201ENST00000300917 PPARGC1BQ86YN6 1023 aaKnown RBP23.3■■□□□ 1.32
SMG8-201ENST00000300917 PEG3Q9GZU2 1588 aa23.22■■□□□ 1.31
SMG8-201ENST00000300917 SOGA1O94964 1423 aa23.21■■□□□ 1.31
SMG8-201ENST00000300917 RUSC2Q8N2Y8 1516 aa23.13■■□□□ 1.29
SMG8-201ENST00000300917 WRNQ14191 1432 aaPredicted RBP eCLIP23.12■■□□□ 1.29
SMG8-201ENST00000300917 TRIM26Q12899 539 aaPredicted RBP23.11■■□□□ 1.29
SMG8-201ENST00000300917 TTBK1Q5TCY1 1321 aaPredicted RBP23.11■■□□□ 1.29
SMG8-201ENST00000300917 HRCP23327 699 aa23.08■■□□□ 1.29
SMG8-201ENST00000300917 UBTFP17480 764 aaKnown RBP23.08■■□□□ 1.29
SMG8-201ENST00000300917 CSRNP3Q8WYN3 585 aa23.04■■□□□ 1.28
SMG8-201ENST00000300917 RANGAP1P46060 587 aaPredicted RBP23■■□□□ 1.27
SMG8-201ENST00000300917 NCAPD3P42695 1498 aa22.96■■□□□ 1.27
SMG8-201ENST00000300917 SYNJ1O43426 1573 aa22.96■■□□□ 1.27
SMG8-201ENST00000300917 HMGXB3Q12766 1538 aa22.83■■□□□ 1.24
SMG8-201ENST00000300917 CEP162Q5TB80 1403 aa22.81■■□□□ 1.24
SMG8-201ENST00000300917 EEA1Q15075 1411 aa22.76■■□□□ 1.23
SMG8-201ENST00000300917 CC2D2AQ9P2K1 1620 aa22.73■■□□□ 1.23
SMG8-201ENST00000300917 TNIKQ9UKE5 1360 aa22.72■■□□□ 1.23
SMG8-201ENST00000300917 GOLGA3Q08378 1498 aa22.7■■□□□ 1.22
SMG8-201ENST00000300917 CFTRP13569 1480 aa22.66■■□□□ 1.22
SMG8-201ENST00000300917 DNAJC5BQ9UF47 199 aa22.64■■□□□ 1.22
SMG8-201ENST00000300917 RAPGEF2Q9Y4G8 1499 aa22.62■■□□□ 1.21
SMG8-201ENST00000300917 CUX1P39880 1505 aa22.62■■□□□ 1.21
SMG8-201ENST00000300917 TOP2BQ02880 1626 aa22.61■■□□□ 1.21
SMG8-201ENST00000300917 CEP164Q9UPV0 1460 aa22.6■■□□□ 1.21
SMG8-201ENST00000300917 CADPSQ9ULU8 1353 aa22.59■■□□□ 1.21
SMG8-201ENST00000300917 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.51■■□□□ 1.19
SMG8-201ENST00000300917 CLIP1P30622 1438 aa22.51■■□□□ 1.19
SMG8-201ENST00000300917 NESP48681 1621 aa22.49■■□□□ 1.19
SMG8-201ENST00000300917 BIVM-ERCC5R4GMW8 1640 aa22.47■■□□□ 1.19
SMG8-201ENST00000300917 KIF21BO75037 1637 aa22.43■■□□□ 1.18
SMG8-201ENST00000300917 KIF27Q86VH2 1401 aa22.43■■□□□ 1.18
SMG8-201ENST00000300917 APLP2Q06481 763 aa22.4■■□□□ 1.18
SMG8-201ENST00000300917 CUX2O14529 1486 aa22.4■■□□□ 1.18
SMG8-201ENST00000300917 FANCD2Q9BXW9 1451 aa22.39■■□□□ 1.17
SMG8-201ENST00000300917 CCER1Q8TC90 406 aaPredicted RBP22.37■■□□□ 1.17
SMG8-201ENST00000300917 FGD5Q6ZNL6 1462 aa22.35■■□□□ 1.17
SMG8-201ENST00000300917 PRXQ9BXM0 1461 aa22.32■■□□□ 1.16
SMG8-201ENST00000300917 HNRNPUL2Q1KMD3 747 aaKnown RBP22.32■■□□□ 1.16
SMG8-201ENST00000300917 RAD54L2Q9Y4B4 1467 aa22.27■■□□□ 1.16
SMG8-201ENST00000300917 ZEB1P37275 1124 aaPredicted RBP22.26■■□□□ 1.15
SMG8-201ENST00000300917 VPS8Q8N3P4 1428 aa22.26■■□□□ 1.15
SMG8-201ENST00000300917 IGF1RP08069 1367 aa22.26■■□□□ 1.15
SMG8-201ENST00000300917 P3H3Q8IVL6 736 aa22.23■■□□□ 1.15
SMG8-201ENST00000300917 CARMIL1Q5VZK9 1371 aa22.19■■□□□ 1.14
SMG8-201ENST00000300917 PRDM2Q13029 1718 aa22.19■■□□□ 1.14
SMG8-201ENST00000300917 ERICH3Q5RHP9 1530 aa22.17■■□□□ 1.14
SMG8-201ENST00000300917 ATP1B4Q9UN42 357 aaPredicted RBP22.16■■□□□ 1.14
SMG8-201ENST00000300917 KANK4Q5T7N3 995 aaPredicted RBP22.15■■□□□ 1.14
SMG8-201ENST00000300917 TOPBP1Q92547 1522 aa22.14■■□□□ 1.14
SMG8-201ENST00000300917 ARAP1Q96P48 1450 aa22.13■■□□□ 1.13
SMG8-201ENST00000300917 POLA1P09884 1462 aaPredicted RBP22.13■■□□□ 1.13
SMG8-201ENST00000300917 TDRD9Q8NDG6 1382 aaKnown RBP22.11■■□□□ 1.13
SMG8-201ENST00000300917 URB2Q14146 1524 aaKnown RBP22.07■■□□□ 1.12
SMG8-201ENST00000300917 DNMBPQ6XZF7 1577 aa22.06■■□□□ 1.12
SMG8-201ENST00000300917 ARHGAP35Q9NRY4 1499 aa22.04■■□□□ 1.12
SMG8-201ENST00000300917 PDS5BQ9NTI5 1447 aa22.03■■□□□ 1.12
SMG8-201ENST00000300917 ITGAEP38570 1179 aa22.02■■□□□ 1.12
SMG8-201ENST00000300917 LAMC3Q9Y6N6 1575 aa22.01■■□□□ 1.11
SMG8-201ENST00000300917 ABCA10Q8WWZ4 1543 aa21.95■■□□□ 1.11
SMG8-201ENST00000300917 KIF21AQ7Z4S6 1674 aa21.9■■□□□ 1.1
SMG8-201ENST00000300917 FHOD3Q2V2M9 1422 aa21.88■■□□□ 1.09
SMG8-201ENST00000300917 GAPVD1Q14C86 1478 aa21.84■■□□□ 1.09
SMG8-201ENST00000300917 AQRO60306 1485 aaKnown RBP eCLIP21.81■■□□□ 1.08
SMG8-201ENST00000300917 ARID3CA6NKF2 412 aa21.76■■□□□ 1.07
SMG8-201ENST00000300917 FAM50AQ14320 339 aaKnown RBP21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 227.7 ms