RNA–Protein interactions for RNA: ENST00000296861.2

TNFRSF21-201, Transcript of TNF receptor superfamily member 21, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF21, Length 3,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF21-201ENST00000296861 NISCHQ9Y2I1 1504 aa25.68■■□□□ 1.7
TNFRSF21-201ENST00000296861 SHROOM4Q9ULL8 1493 aa23.28■■□□□ 1.32
TNFRSF21-201ENST00000296861 SUPT5HO00267 1087 aaKnown RBP23.14■■□□□ 1.29
TNFRSF21-201ENST00000296861 DCAF8L2P0C7V8 631 aa22.93■■□□□ 1.26
TNFRSF21-201ENST00000296861 PCGF6Q9BYE7 350 aa22.2■■□□□ 1.15
TNFRSF21-201ENST00000296861 EHMT2Q96KQ7 1210 aa21.99■■□□□ 1.11
TNFRSF21-201ENST00000296861 PPARGC1BQ86YN6 1023 aaKnown RBP21.91■■□□□ 1.1
TNFRSF21-201ENST00000296861 CHIC1Q5VXU3 224 aa21.85■■□□□ 1.09
TNFRSF21-201ENST00000296861 HRCP23327 699 aa21.78■■□□□ 1.08
TNFRSF21-201ENST00000296861 LOC105371045A0A1W2PR82 267 aa21.77■■□□□ 1.08
TNFRSF21-201ENST00000296861 FAM9AQ8IZU1 332 aaPredicted RBP21.64■■□□□ 1.05
TNFRSF21-201ENST00000296861 CCDC180Q9P1Z9 1646 aa21.57■■□□□ 1.04
TNFRSF21-201ENST00000296861 ZCCHC6Q5VYS8 1495 aaKnown RBP21.55■■□□□ 1.04
TNFRSF21-201ENST00000296861 MYO15BQ96JP2 1530 aa21.53■■□□□ 1.04
TNFRSF21-201ENST00000296861 TTBK1Q5TCY1 1321 aaPredicted RBP21.26■□□□□ 0.99
TNFRSF21-201ENST00000296861 TRIM41Q8WV44 630 aa21.15■□□□□ 0.98
TNFRSF21-201ENST00000296861 ABCC9O60706 1549 aa21.14■□□□□ 0.98
TNFRSF21-201ENST00000296861 TRIM26Q12899 539 aaPredicted RBP21.1■□□□□ 0.97
TNFRSF21-201ENST00000296861 SCRIBQ14160 1630 aa20.8■□□□□ 0.92
TNFRSF21-201ENST00000296861 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.75■□□□□ 0.91
TNFRSF21-201ENST00000296861 CCER1Q8TC90 406 aaPredicted RBP20.74■□□□□ 0.91
TNFRSF21-201ENST00000296861 DCAF1Q9Y4B6 1507 aa20.69■□□□□ 0.9
TNFRSF21-201ENST00000296861 ZEB1P37275 1124 aaPredicted RBP20.67■□□□□ 0.9
TNFRSF21-201ENST00000296861 RANGAP1P46060 587 aaPredicted RBP20.58■□□□□ 0.88
TNFRSF21-201ENST00000296861 YTHDC1Q96MU7 727 aaKnown RBP20.51■□□□□ 0.87
TNFRSF21-201ENST00000296861 PELP1Q8IZL8 1130 aaKnown RBP20.5■□□□□ 0.87
TNFRSF21-201ENST00000296861 SCAF1Q9H7N4 1312 aaKnown RBP20.47■□□□□ 0.87
TNFRSF21-201ENST00000296861 PABPN1Q86U42 306 aaKnown RBP eCLIP20.45■□□□□ 0.86
TNFRSF21-201ENST00000296861 UBTFP17480 764 aaKnown RBP20.38■□□□□ 0.85
TNFRSF21-201ENST00000296861 RSF1Q96T23 1441 aaPredicted RBP20.37■□□□□ 0.85
TNFRSF21-201ENST00000296861 CECR2Q9BXF3 1484 aa20.3■□□□□ 0.84
TNFRSF21-201ENST00000296861 DIEXFQ68CQ4 756 aaKnown RBP20.27■□□□□ 0.84
TNFRSF21-201ENST00000296861 NACADO15069 1562 aa20.27■□□□□ 0.84
TNFRSF21-201ENST00000296861 HNRNPUL2Q1KMD3 747 aaKnown RBP20.24■□□□□ 0.83
TNFRSF21-201ENST00000296861 GTF3C3Q9Y5Q9 886 aa20.23■□□□□ 0.83
TNFRSF21-201ENST00000296861 NEUROD1Q13562 356 aa20.23■□□□□ 0.83
TNFRSF21-201ENST00000296861 CENPBP07199 599 aaPredicted RBP20.2■□□□□ 0.82
TNFRSF21-201ENST00000296861 RB1CC1Q8TDY2 1594 aa20.13■□□□□ 0.81
TNFRSF21-201ENST00000296861 ACIN1Q9UKV3 1341 aaKnown RBP20.11■□□□□ 0.81
TNFRSF21-201ENST00000296861 MROH2BQ7Z745 1585 aa20.08■□□□□ 0.8
TNFRSF21-201ENST00000296861 APLP2Q06481 763 aa20.03■□□□□ 0.8
TNFRSF21-201ENST00000296861 WIZO95785 1651 aa19.91■□□□□ 0.78
TNFRSF21-201ENST00000296861 ITGAEP38570 1179 aa19.87■□□□□ 0.77
TNFRSF21-201ENST00000296861 ZNF316A6NFI3 1004 aaPredicted RBP19.81■□□□□ 0.76
TNFRSF21-201ENST00000296861 CSRNP3Q8WYN3 585 aa19.79■□□□□ 0.76
TNFRSF21-201ENST00000296861 MIER1Q8N108 512 aa19.76■□□□□ 0.75
TNFRSF21-201ENST00000296861 BAZ1AQ9NRL2 1556 aaPredicted RBP19.75■□□□□ 0.75
TNFRSF21-201ENST00000296861 SOGA1O94964 1423 aa19.67■□□□□ 0.74
TNFRSF21-201ENST00000296861 CEP162Q5TB80 1403 aa19.65■□□□□ 0.74
TNFRSF21-201ENST00000296861 ABCC8Q09428 1581 aa19.65■□□□□ 0.74
TNFRSF21-201ENST00000296861 ATP1B4Q9UN42 357 aaPredicted RBP19.65■□□□□ 0.74
TNFRSF21-201ENST00000296861 CCDC88BA6NC98 1476 aa19.62■□□□□ 0.73
TNFRSF21-201ENST00000296861 MYT1Q01538 1121 aa19.58■□□□□ 0.73
TNFRSF21-201ENST00000296861 SMARCA4P51532 1647 aa19.56■□□□□ 0.72
TNFRSF21-201ENST00000296861 BCANQ96GW7 911 aa19.53■□□□□ 0.72
TNFRSF21-201ENST00000296861 RUSC2Q8N2Y8 1516 aa19.51■□□□□ 0.71
TNFRSF21-201ENST00000296861 UNC13AQ9UPW8 1703 aa19.5■□□□□ 0.71
TNFRSF21-201ENST00000296861 TOP2AP11388 1531 aaKnown RBP19.46■□□□□ 0.71
TNFRSF21-201ENST00000296861 BICRAQ9NZM4 1560 aa19.42■□□□□ 0.7
TNFRSF21-201ENST00000296861 BAZ1BQ9UIG0 1483 aaKnown RBP19.37■□□□□ 0.69
TNFRSF21-201ENST00000296861 TNIKQ9UKE5 1360 aa19.37■□□□□ 0.69
TNFRSF21-201ENST00000296861 SMARCA2P51531 1590 aa19.36■□□□□ 0.69
TNFRSF21-201ENST00000296861 HIRIP3Q9BW71 556 aaPredicted RBP19.33■□□□□ 0.68
TNFRSF21-201ENST00000296861 CLIP1P30622 1438 aa19.32■□□□□ 0.68
TNFRSF21-201ENST00000296861 ATAD2BQ9ULI0 1458 aa19.29■□□□□ 0.68
TNFRSF21-201ENST00000296861 P3H3Q8IVL6 736 aa19.29■□□□□ 0.68
TNFRSF21-201ENST00000296861 WRNQ14191 1432 aaPredicted RBP eCLIP19.28■□□□□ 0.68
TNFRSF21-201ENST00000296861 FAM50AQ14320 339 aaKnown RBP19.26■□□□□ 0.67
TNFRSF21-201ENST00000296861 GOLGA3Q08378 1498 aa19.23■□□□□ 0.67
TNFRSF21-201ENST00000296861 CNGB1Q14028 1251 aaPredicted RBP19.21■□□□□ 0.67
TNFRSF21-201ENST00000296861 KANK4Q5T7N3 995 aaPredicted RBP19.2■□□□□ 0.66
TNFRSF21-201ENST00000296861 DDX10Q13206 875 aaKnown RBP19.18■□□□□ 0.66
TNFRSF21-201ENST00000296861 KCNH8Q96L42 1107 aa19.18■□□□□ 0.66
TNFRSF21-201ENST00000296861 TRIM52Q96A61 297 aa19.11■□□□□ 0.65
TNFRSF21-201ENST00000296861 SUPT16HQ9Y5B9 1047 aaKnown RBP19.1■□□□□ 0.65
TNFRSF21-201ENST00000296861 FKBP8Q14318 412 aa19.09■□□□□ 0.65
TNFRSF21-201ENST00000296861 NEFLP07196 543 aa19.08■□□□□ 0.65
TNFRSF21-201ENST00000296861 SIN3AQ96ST3 1273 aa19.06■□□□□ 0.64
TNFRSF21-201ENST00000296861 EIF4G1Q04637 1599 aaKnown RBP19.04■□□□□ 0.64
TNFRSF21-201ENST00000296861 EEA1Q15075 1411 aa19.04■□□□□ 0.64
TNFRSF21-201ENST00000296861 RAPGEF2Q9Y4G8 1499 aa19.04■□□□□ 0.64
TNFRSF21-201ENST00000296861 CEP164Q9UPV0 1460 aa19.03■□□□□ 0.64
TNFRSF21-201ENST00000296861 VPS8Q8N3P4 1428 aa18.99■□□□□ 0.63
TNFRSF21-201ENST00000296861 SYNJ1O43426 1573 aa18.96■□□□□ 0.63
TNFRSF21-201ENST00000296861 IRX6P78412 446 aaPredicted RBP18.96■□□□□ 0.63
TNFRSF21-201ENST00000296861 ARID3CA6NKF2 412 aa18.94■□□□□ 0.62
TNFRSF21-201ENST00000296861 POLR3GLQ9BT43 218 aa18.9■□□□□ 0.62
TNFRSF21-201ENST00000296861 PEG3Q9GZU2 1588 aa18.89■□□□□ 0.62
TNFRSF21-201ENST00000296861 DHX57Q6P158 1386 aaKnown RBP18.89■□□□□ 0.62
TNFRSF21-201ENST00000296861 SENP3-EIF4A1A0A087X0R7 540 aa18.86■□□□□ 0.61
TNFRSF21-201ENST00000296861 NCAPD3P42695 1498 aa18.85■□□□□ 0.61
TNFRSF21-201ENST00000296861 ANP32CO43423 234 aa18.85■□□□□ 0.61
TNFRSF21-201ENST00000296861 TSHZ2Q9NRE2 1034 aa18.85■□□□□ 0.61
TNFRSF21-201ENST00000296861 ERICH6Q7L0X2 663 aa18.83■□□□□ 0.61
TNFRSF21-201ENST00000296861 CCNB3Q8WWL7 1395 aa18.77■□□□□ 0.6
TNFRSF21-201ENST00000296861 CHIC2Q9UKJ5 165 aa18.76■□□□□ 0.59
TNFRSF21-201ENST00000296861 DNAJC5BQ9UF47 199 aa18.75■□□□□ 0.59
TNFRSF21-201ENST00000296861 HNRNPUQ00839 825 aaKnown RBP eCLIP18.75■□□□□ 0.59
TNFRSF21-201ENST00000296861 KIF27Q86VH2 1401 aa18.73■□□□□ 0.59
TNFRSF21-201ENST00000296861 RAB3GAP2Q9H2M9 1393 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms