RNA–Protein interactions for RNA: ENST00000294172.6

NXF1-201, Transcript of nuclear RNA export factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NXF1, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-201ENST00000294172 NISCHQ9Y2I1 1504 aa30.16■■■□□ 2.42
NXF1-201ENST00000294172 CCDC180Q9P1Z9 1646 aa25.86■■□□□ 1.73
NXF1-201ENST00000294172 ZCCHC6Q5VYS8 1495 aaKnown RBP25.42■■□□□ 1.66
NXF1-201ENST00000294172 SHROOM4Q9ULL8 1493 aa25.35■■□□□ 1.65
NXF1-201ENST00000294172 DCAF8L2P0C7V8 631 aa25.16■■□□□ 1.62
NXF1-201ENST00000294172 DCAF1Q9Y4B6 1507 aa24.77■■□□□ 1.56
NXF1-201ENST00000294172 SUPT5HO00267 1087 aaKnown RBP24.68■■□□□ 1.54
NXF1-201ENST00000294172 ABCC9O60706 1549 aa24.34■■□□□ 1.49
NXF1-201ENST00000294172 MYO15BQ96JP2 1530 aa24.24■■□□□ 1.47
NXF1-201ENST00000294172 SCRIBQ14160 1630 aa24.15■■□□□ 1.46
NXF1-201ENST00000294172 NACADO15069 1562 aa24.04■■□□□ 1.44
NXF1-201ENST00000294172 CHIC1Q5VXU3 224 aa23.76■■□□□ 1.39
NXF1-201ENST00000294172 RB1CC1Q8TDY2 1594 aa23.75■■□□□ 1.39
NXF1-201ENST00000294172 RSF1Q96T23 1441 aaPredicted RBP23.69■■□□□ 1.38
NXF1-201ENST00000294172 CECR2Q9BXF3 1484 aa23.53■■□□□ 1.36
NXF1-201ENST00000294172 MROH2BQ7Z745 1585 aa23.4■■□□□ 1.34
NXF1-201ENST00000294172 UNC13AQ9UPW8 1703 aa23.3■■□□□ 1.32
NXF1-201ENST00000294172 WIZO95785 1651 aa23.24■■□□□ 1.31
NXF1-201ENST00000294172 BAZ1AQ9NRL2 1556 aaPredicted RBP23.22■■□□□ 1.31
NXF1-201ENST00000294172 PABPN1Q86U42 306 aaKnown RBP eCLIP23.19■■□□□ 1.39e-7■□□□□ 8.8
NXF1-201ENST00000294172 BICRAQ9NZM4 1560 aa23.06■■□□□ 1.28
NXF1-201ENST00000294172 TRIM41Q8WV44 630 aa23.05■■□□□ 1.28
NXF1-201ENST00000294172 SMARCA4P51532 1647 aa23.05■■□□□ 1.28
NXF1-201ENST00000294172 LOC105371045A0A1W2PR82 267 aa23.03■■□□□ 1.28
NXF1-201ENST00000294172 TOP2AP11388 1531 aaKnown RBP22.91■■□□□ 1.26
NXF1-201ENST00000294172 FAM9AQ8IZU1 332 aaPredicted RBP22.81■■□□□ 1.24
NXF1-201ENST00000294172 CCDC88BA6NC98 1476 aa22.8■■□□□ 1.24
NXF1-201ENST00000294172 SMARCA2P51531 1590 aa22.76■■□□□ 1.23
NXF1-201ENST00000294172 EIF4G1Q04637 1599 aaKnown RBP22.71■■□□□ 1.23
NXF1-201ENST00000294172 PEG3Q9GZU2 1588 aa22.65■■□□□ 1.22
NXF1-201ENST00000294172 EHMT2Q96KQ7 1210 aa22.61■■□□□ 1.21
NXF1-201ENST00000294172 ATAD2BQ9ULI0 1458 aa22.59■■□□□ 1.21
NXF1-201ENST00000294172 ABCC8Q09428 1581 aa22.56■■□□□ 1.2
NXF1-201ENST00000294172 PCGF6Q9BYE7 350 aa22.56■■□□□ 1.2
NXF1-201ENST00000294172 BAZ1BQ9UIG0 1483 aaKnown RBP22.52■■□□□ 1.2
NXF1-201ENST00000294172 WRNQ14191 1432 aaPredicted RBP eCLIP22.29■■□□□ 1.16
NXF1-201ENST00000294172 SOGA1O94964 1423 aa22.28■■□□□ 1.16
NXF1-201ENST00000294172 TRIM26Q12899 539 aaPredicted RBP22.26■■□□□ 1.15
NXF1-201ENST00000294172 NCAPD3P42695 1498 aa22.24■■□□□ 1.15
NXF1-201ENST00000294172 HRCP23327 699 aa22.23■■□□□ 1.15
NXF1-201ENST00000294172 HMGXB3Q12766 1538 aa22.2■■□□□ 1.14
NXF1-201ENST00000294172 RUSC2Q8N2Y8 1516 aa22.17■■□□□ 1.14
NXF1-201ENST00000294172 SYNJ1O43426 1573 aa22.15■■□□□ 1.14
NXF1-201ENST00000294172 CSRNP3Q8WYN3 585 aa22.15■■□□□ 1.14
NXF1-201ENST00000294172 EEA1Q15075 1411 aa22.13■■□□□ 1.13
NXF1-201ENST00000294172 UBTFP17480 764 aaKnown RBP22.03■■□□□ 1.12
NXF1-201ENST00000294172 PPARGC1BQ86YN6 1023 aaKnown RBP22.01■■□□□ 1.11
NXF1-201ENST00000294172 TNIKQ9UKE5 1360 aa21.99■■□□□ 1.11
NXF1-201ENST00000294172 CEP162Q5TB80 1403 aa21.97■■□□□ 1.11
NXF1-201ENST00000294172 GOLGA3Q08378 1498 aa21.95■■□□□ 1.1
NXF1-201ENST00000294172 TOP2BQ02880 1626 aa21.94■■□□□ 1.1
NXF1-201ENST00000294172 CFTRP13569 1480 aa21.93■■□□□ 1.1
NXF1-201ENST00000294172 CC2D2AQ9P2K1 1620 aa21.91■■□□□ 1.1
NXF1-201ENST00000294172 CEP164Q9UPV0 1460 aa21.87■■□□□ 1.09
NXF1-201ENST00000294172 BIVM-ERCC5R4GMW8 1640 aa21.86■■□□□ 1.09
NXF1-201ENST00000294172 CUX1P39880 1505 aa21.82■■□□□ 1.08
NXF1-201ENST00000294172 KIF21BO75037 1637 aa21.81■■□□□ 1.08
NXF1-201ENST00000294172 CADPSQ9ULU8 1353 aa21.79■■□□□ 1.08
NXF1-201ENST00000294172 TTBK1Q5TCY1 1321 aaPredicted RBP21.76■■□□□ 1.07
NXF1-201ENST00000294172 RAPGEF2Q9Y4G8 1499 aa21.76■■□□□ 1.07
NXF1-201ENST00000294172 RANGAP1P46060 587 aaPredicted RBP21.69■■□□□ 1.06
NXF1-201ENST00000294172 PRDM2Q13029 1718 aa21.69■■□□□ 1.06
NXF1-201ENST00000294172 CLIP1P30622 1438 aa21.68■■□□□ 1.06
NXF1-201ENST00000294172 KIF27Q86VH2 1401 aa21.66■■□□□ 1.06
NXF1-201ENST00000294172 PRXQ9BXM0 1461 aa21.61■■□□□ 1.05
NXF1-201ENST00000294172 ZEB1P37275 1124 aaPredicted RBP21.58■■□□□ 1.05
NXF1-201ENST00000294172 FANCD2Q9BXW9 1451 aa21.57■■□□□ 1.04
NXF1-201ENST00000294172 ERICH3Q5RHP9 1530 aa21.56■■□□□ 1.04
NXF1-201ENST00000294172 NESP48681 1621 aa21.53■■□□□ 1.04
NXF1-201ENST00000294172 CUX2O14529 1486 aa21.53■■□□□ 1.04
NXF1-201ENST00000294172 FGD5Q6ZNL6 1462 aa21.52■■□□□ 1.04
NXF1-201ENST00000294172 VPS8Q8N3P4 1428 aa21.52■■□□□ 1.03
NXF1-201ENST00000294172 APLP2Q06481 763 aa21.46■■□□□ 1.03
NXF1-201ENST00000294172 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.45■■□□□ 1.02
NXF1-201ENST00000294172 DNAJC5BQ9UF47 199 aa21.45■■□□□ 1.02
NXF1-201ENST00000294172 IGF1RP08069 1367 aa21.44■■□□□ 1.02
NXF1-201ENST00000294172 CCER1Q8TC90 406 aaPredicted RBP21.4■■□□□ 1.02
NXF1-201ENST00000294172 DNMBPQ6XZF7 1577 aa21.38■■□□□ 1.01
NXF1-201ENST00000294172 TOPBP1Q92547 1522 aa21.37■■□□□ 1.01
NXF1-201ENST00000294172 LAMC3Q9Y6N6 1575 aa21.36■■□□□ 1.01
NXF1-201ENST00000294172 CARMIL1Q5VZK9 1371 aa21.36■■□□□ 1.01
NXF1-201ENST00000294172 ARAP1Q96P48 1450 aa21.36■■□□□ 1.01
NXF1-201ENST00000294172 RAD54L2Q9Y4B4 1467 aa21.36■■□□□ 1.01
NXF1-201ENST00000294172 POLA1P09884 1462 aaPredicted RBP21.33■■□□□ 1
NXF1-201ENST00000294172 PDS5BQ9NTI5 1447 aa21.27■■□□□ 1
NXF1-201ENST00000294172 ABCA10Q8WWZ4 1543 aa21.26■□□□□ 0.99
NXF1-201ENST00000294172 URB2Q14146 1524 aaKnown RBP21.26■□□□□ 0.99
NXF1-201ENST00000294172 ARHGAP35Q9NRY4 1499 aa21.26■□□□□ 0.99
NXF1-201ENST00000294172 HNRNPUL2Q1KMD3 747 aaKnown RBP21.24■□□□□ 0.99
NXF1-201ENST00000294172 KANK4Q5T7N3 995 aaPredicted RBP21.19■□□□□ 0.98
NXF1-201ENST00000294172 KIF21AQ7Z4S6 1674 aa21.14■□□□□ 0.98
NXF1-201ENST00000294172 TDRD9Q8NDG6 1382 aaKnown RBP21.14■□□□□ 0.97
NXF1-201ENST00000294172 P3H3Q8IVL6 736 aa21.1■□□□□ 0.97
NXF1-201ENST00000294172 CUL7Q14999 1698 aa21.07■□□□□ 0.96
NXF1-201ENST00000294172 WDR97A6NE52 1622 aa21.07■□□□□ 0.96
NXF1-201ENST00000294172 GAPVD1Q14C86 1478 aa21.05■□□□□ 0.96
NXF1-201ENST00000294172 ABCA5Q8WWZ7 1642 aa21.02■□□□□ 0.96
NXF1-201ENST00000294172 ATP1B4Q9UN42 357 aaPredicted RBP21■□□□□ 0.95
NXF1-201ENST00000294172 FHAD1B1AJZ9 1412 aa20.98■□□□□ 0.95
NXF1-201ENST00000294172 FHOD3Q2V2M9 1422 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms