RNA–Protein interactions for RNA: ENST00000294172.6

NXF1-201, Transcript of nuclear RNA export factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NXF1, Length 2,346 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-201ENST00000294172 SF3B1O75533 1304 aaKnown RBP eCLIP14.4□□□□□ -0.13e-7■■■■■ 117.6
NXF1-201ENST00000294172 PTBP1P26599 531 aaKnown RBP eCLIP12.66□□□□□ -0.383e-7■■■■■ 65.2
NXF1-201ENST00000294172 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.22■□□□□ 0.034e-6■■■■■ 63.2
NXF1-201ENST00000294172 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.42□□□□□ -0.268e-29■■■■■ 62
NXF1-201ENST00000294172 MATR3P43243 847 aaKnown RBP eCLIP15.26■□□□□ 0.031e-14■■■■■ 51.7
NXF1-201ENST00000294172 EFTUD2Q15029 972 aaKnown RBP eCLIP14.56□□□□□ -0.088e-7■■■■■ 38.2
NXF1-201ENST00000294172 GPKOWQ92917 476 aaPredicted RBP eCLIP16.02■□□□□ 0.152e-6■■■■■ 27.5
NXF1-201ENST00000294172 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.96□□□□□ -0.016e-7■■■■■ 27.2
NXF1-201ENST00000294172 TRA2AQ13595 282 aaKnown RBP eCLIP12.54□□□□□ -0.46e-8■■■■□ 25.7
NXF1-201ENST00000294172 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.58■□□□□ 0.254e-7■■■■□ 25.1
NXF1-201ENST00000294172 SF3A3Q12874 501 aaKnown RBP eCLIP14.63□□□□□ -0.075e-13■■■■□ 24.4
NXF1-201ENST00000294172 GTF2F1P35269 517 aaKnown RBP eCLIP15.8■□□□□ 0.129e-11■■■■□ 23
NXF1-201ENST00000294172 RBM5P52756 815 aaKnown RBP eCLIP15.88■□□□□ 0.134e-6■■■■□ 21.7
NXF1-201ENST00000294172 RBM15Q96T37 977 aaKnown RBP eCLIP14.7□□□□□ -0.064e-6■■■■□ 20.7
NXF1-201ENST00000294172 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.67■□□□□ 0.13e-8■■■■□ 20
NXF1-201ENST00000294172 AQRO60306 1485 aaKnown RBP eCLIP20.89■□□□□ 0.932e-7■■■□□ 19.2
NXF1-201ENST00000294172 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.68■□□□□ 0.12e-9■■■□□ 18.9
NXF1-201ENST00000294172 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.91□□□□□ -0.666e-7■■■□□ 18.9
NXF1-201ENST00000294172 EIF3HO15372 352 aaKnown RBP eCLIP14.82□□□□□ -0.049e-8■■■□□ 18.9
NXF1-201ENST00000294172 U2AF2P26368 475 aaKnown RBP eCLIP16.2■□□□□ 0.185e-10■■■□□ 17.1
NXF1-201ENST00000294172 DDX3XO00571 662 aaKnown RBP eCLIP15.22■□□□□ 0.032e-12■■■□□ 16.8
NXF1-201ENST00000294172 U2AF1Q01081 240 aaKnown RBP eCLIP18.33■□□□□ 0.525e-8■■■□□ 16.5
NXF1-201ENST00000294172 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.58■□□□□ 0.721e-7■■■□□ 16.1
NXF1-201ENST00000294172 PPIGQ13427 754 aaKnown RBP eCLIP13.76□□□□□ -0.217e-8■■■□□ 15.6
NXF1-201ENST00000294172 ZRANB2O95218 330 aaKnown RBP eCLIP15.34■□□□□ 0.057e-6■■■□□ 15
NXF1-201ENST00000294172 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.09■□□□□ 0.013e-8■■■□□ 14.7
NXF1-201ENST00000294172 SF3B4Q15427 424 aaKnown RBP eCLIP12.65□□□□□ -0.392e-6■■□□□ 14.4
NXF1-201ENST00000294172 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.22■□□□□ 0.351e-6■■□□□ 13.7
NXF1-201ENST00000294172 RBM22Q9NW64 420 aaKnown RBP eCLIP14.26□□□□□ -0.134e-6■■□□□ 12.7
NXF1-201ENST00000294172 ZNF622Q969S3 477 aaKnown RBP eCLIP15.96■□□□□ 0.156e-8■■□□□ 11.4
NXF1-201ENST00000294172 NCBP2P52298 156 aaKnown RBP eCLIP13.28□□□□□ -0.282e-6■□□□□ 10.8
NXF1-201ENST00000294172 YBX3P16989 372 aaKnown RBP eCLIP15.04■□□□□ -03e-8■□□□□ 10.5
NXF1-201ENST00000294172 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.23■□□□□ 0.035e-8■□□□□ 10.3
NXF1-201ENST00000294172 PCBP2Q15366 365 aaKnown RBP eCLIP13.79□□□□□ -0.29e-8■□□□□ 10.3
NXF1-201ENST00000294172 PRPF4O43172 522 aaKnown RBP eCLIP14.5□□□□□ -0.094e-7■□□□□ 9.9
NXF1-201ENST00000294172 HNRNPMP52272 730 aaKnown RBP eCLIP19.85■□□□□ 0.772e-7■□□□□ 9.4
NXF1-201ENST00000294172 PABPN1Q86U42 306 aaKnown RBP eCLIP23.19■■□□□ 1.39e-7■□□□□ 8.8
Retrieved 37 of 37 RNA–protein pairs in 9.2 ms