RNA–Protein interactions for RNA: ENST00000293780.4

CHRNE-201, Transcript of cholinergic receptor nicotinic epsilon subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHRNE, Length 2,455 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNE-201ENST00000293780 NISCHQ9Y2I1 1504 aa34.57■■■■□ 3.12
CHRNE-201ENST00000293780 SHROOM4Q9ULL8 1493 aa29.73■■■□□ 2.35
CHRNE-201ENST00000293780 CCDC180Q9P1Z9 1646 aa29.41■■■□□ 2.3
CHRNE-201ENST00000293780 ZCCHC6Q5VYS8 1495 aaKnown RBP29.25■■■□□ 2.27
CHRNE-201ENST00000293780 SUPT5HO00267 1087 aaKnown RBP29.22■■■□□ 2.27
CHRNE-201ENST00000293780 DCAF8L2P0C7V8 631 aa28.79■■■□□ 2.2
CHRNE-201ENST00000293780 CHIC1Q5VXU3 224 aa28.45■■■□□ 2.14
CHRNE-201ENST00000293780 MYO15BQ96JP2 1530 aa28.39■■■□□ 2.13
CHRNE-201ENST00000293780 DCAF1Q9Y4B6 1507 aa28.27■■■□□ 2.12
CHRNE-201ENST00000293780 ABCC9O60706 1549 aa28.14■■■□□ 2.09
CHRNE-201ENST00000293780 HRCP23327 699 aa27.79■■■□□ 2.04
CHRNE-201ENST00000293780 PCGF6Q9BYE7 350 aa27.75■■■□□ 2.03
CHRNE-201ENST00000293780 LOC105371045A0A1W2PR82 267 aa27.69■■■□□ 2.02
CHRNE-201ENST00000293780 SCRIBQ14160 1630 aa27.55■■■□□ 2
CHRNE-201ENST00000293780 NACADO15069 1562 aa27.45■■□□□ 1.99
CHRNE-201ENST00000293780 RSF1Q96T23 1441 aaPredicted RBP27.45■■□□□ 1.99
CHRNE-201ENST00000293780 PPARGC1BQ86YN6 1023 aaKnown RBP27.3■■□□□ 1.96
CHRNE-201ENST00000293780 RB1CC1Q8TDY2 1594 aa27.27■■□□□ 1.96
CHRNE-201ENST00000293780 TRIM41Q8WV44 630 aa27.15■■□□□ 1.94
CHRNE-201ENST00000293780 TRIM26Q12899 539 aaPredicted RBP27.11■■□□□ 1.93
CHRNE-201ENST00000293780 CECR2Q9BXF3 1484 aa27.04■■□□□ 1.92
CHRNE-201ENST00000293780 FAM9AQ8IZU1 332 aaPredicted RBP27.02■■□□□ 1.92
CHRNE-201ENST00000293780 MROH2BQ7Z745 1585 aa26.93■■□□□ 1.9
CHRNE-201ENST00000293780 EHMT2Q96KQ7 1210 aa26.85■■□□□ 1.89
CHRNE-201ENST00000293780 WIZO95785 1651 aa26.8■■□□□ 1.88
CHRNE-201ENST00000293780 UNC13AQ9UPW8 1703 aa26.73■■□□□ 1.87
CHRNE-201ENST00000293780 PABPN1Q86U42 306 aaKnown RBP eCLIP26.59■■□□□ 1.85
CHRNE-201ENST00000293780 BAZ1AQ9NRL2 1556 aaPredicted RBP26.56■■□□□ 1.84
CHRNE-201ENST00000293780 ZEB1P37275 1124 aaPredicted RBP26.51■■□□□ 1.84
CHRNE-201ENST00000293780 BICRAQ9NZM4 1560 aa26.5■■□□□ 1.83
CHRNE-201ENST00000293780 EIF4G1Q04637 1599 aaKnown RBP26.44■■□□□ 1.82
CHRNE-201ENST00000293780 TOP2AP11388 1531 aaKnown RBP26.3■■□□□ 1.8
CHRNE-201ENST00000293780 SMARCA4P51532 1647 aa26.28■■□□□ 1.8
CHRNE-201ENST00000293780 ABCC8Q09428 1581 aa26.28■■□□□ 1.8
CHRNE-201ENST00000293780 CCDC88BA6NC98 1476 aa26.27■■□□□ 1.8
CHRNE-201ENST00000293780 SMARCA2P51531 1590 aa26.2■■□□□ 1.78
CHRNE-201ENST00000293780 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.08■■□□□ 1.77
CHRNE-201ENST00000293780 SOGA1O94964 1423 aa26.07■■□□□ 1.76
CHRNE-201ENST00000293780 TTBK1Q5TCY1 1321 aaPredicted RBP26■■□□□ 1.75
CHRNE-201ENST00000293780 CCER1Q8TC90 406 aaPredicted RBP25.97■■□□□ 1.75
CHRNE-201ENST00000293780 CEP162Q5TB80 1403 aa25.97■■□□□ 1.75
CHRNE-201ENST00000293780 RUSC2Q8N2Y8 1516 aa25.96■■□□□ 1.75
CHRNE-201ENST00000293780 WRNQ14191 1432 aaPredicted RBP eCLIP25.93■■□□□ 1.74
CHRNE-201ENST00000293780 CSRNP3Q8WYN3 585 aa25.92■■□□□ 1.74
CHRNE-201ENST00000293780 TNIKQ9UKE5 1360 aa25.9■■□□□ 1.74
CHRNE-201ENST00000293780 UBTFP17480 764 aaKnown RBP25.86■■□□□ 1.73
CHRNE-201ENST00000293780 EEA1Q15075 1411 aa25.82■■□□□ 1.72
CHRNE-201ENST00000293780 PELP1Q8IZL8 1130 aaKnown RBP25.76■■□□□ 1.71
CHRNE-201ENST00000293780 SCAF1Q9H7N4 1312 aaKnown RBP25.73■■□□□ 1.71
CHRNE-201ENST00000293780 PEG3Q9GZU2 1588 aa25.73■■□□□ 1.71
CHRNE-201ENST00000293780 GOLGA3Q08378 1498 aa25.71■■□□□ 1.71
CHRNE-201ENST00000293780 SYNJ1O43426 1573 aa25.65■■□□□ 1.7
CHRNE-201ENST00000293780 ATAD2BQ9ULI0 1458 aa25.63■■□□□ 1.69
CHRNE-201ENST00000293780 CEP164Q9UPV0 1460 aa25.54■■□□□ 1.68
CHRNE-201ENST00000293780 DIEXFQ68CQ4 756 aaKnown RBP25.54■■□□□ 1.68
CHRNE-201ENST00000293780 BAZ1BQ9UIG0 1483 aaKnown RBP25.53■■□□□ 1.68
CHRNE-201ENST00000293780 KIF21BO75037 1637 aa25.48■■□□□ 1.67
CHRNE-201ENST00000293780 CLIP1P30622 1438 aa25.46■■□□□ 1.67
CHRNE-201ENST00000293780 ACIN1Q9UKV3 1341 aaKnown RBP25.42■■□□□ 1.66
CHRNE-201ENST00000293780 NEUROD1Q13562 356 aa25.41■■□□□ 1.66
CHRNE-201ENST00000293780 HNRNPUL2Q1KMD3 747 aaKnown RBP25.41■■□□□ 1.66
CHRNE-201ENST00000293780 RAPGEF2Q9Y4G8 1499 aa25.4■■□□□ 1.66
CHRNE-201ENST00000293780 RANGAP1P46060 587 aaPredicted RBP25.4■■□□□ 1.66
CHRNE-201ENST00000293780 NCAPD3P42695 1498 aa25.38■■□□□ 1.65
CHRNE-201ENST00000293780 CC2D2AQ9P2K1 1620 aa25.38■■□□□ 1.65
CHRNE-201ENST00000293780 VPS8Q8N3P4 1428 aa25.34■■□□□ 1.65
CHRNE-201ENST00000293780 ZNF316A6NFI3 1004 aaPredicted RBP25.3■■□□□ 1.64
CHRNE-201ENST00000293780 HMGXB3Q12766 1538 aa25.3■■□□□ 1.64
CHRNE-201ENST00000293780 TOP2BQ02880 1626 aa25.27■■□□□ 1.64
CHRNE-201ENST00000293780 APLP2Q06481 763 aa25.26■■□□□ 1.63
CHRNE-201ENST00000293780 CENPBP07199 599 aaPredicted RBP25.18■■□□□ 1.62
CHRNE-201ENST00000293780 BIVM-ERCC5R4GMW8 1640 aa25.16■■□□□ 1.62
CHRNE-201ENST00000293780 GTF3C3Q9Y5Q9 886 aa25.15■■□□□ 1.62
CHRNE-201ENST00000293780 PRXQ9BXM0 1461 aa25.09■■□□□ 1.61
CHRNE-201ENST00000293780 CUX1P39880 1505 aa25.04■■□□□ 1.6
CHRNE-201ENST00000293780 ERICH3Q5RHP9 1530 aa25.04■■□□□ 1.6
CHRNE-201ENST00000293780 ARAP1Q96P48 1450 aa25.04■■□□□ 1.6
CHRNE-201ENST00000293780 KANK4Q5T7N3 995 aaPredicted RBP25.01■■□□□ 1.59
CHRNE-201ENST00000293780 MIER1Q8N108 512 aa25.01■■□□□ 1.59
CHRNE-201ENST00000293780 YTHDC1Q96MU7 727 aaKnown RBP25■■□□□ 1.59
CHRNE-201ENST00000293780 DNAJC5BQ9UF47 199 aa24.96■■□□□ 1.59
CHRNE-201ENST00000293780 KIF27Q86VH2 1401 aa24.94■■□□□ 1.58
CHRNE-201ENST00000293780 CFTRP13569 1480 aa24.9■■□□□ 1.58
CHRNE-201ENST00000293780 DHX57Q6P158 1386 aaKnown RBP24.87■■□□□ 1.57
CHRNE-201ENST00000293780 ARHGAP35Q9NRY4 1499 aa24.8■■□□□ 1.56
CHRNE-201ENST00000293780 CLSPNQ9HAW4 1339 aa24.78■■□□□ 1.56
CHRNE-201ENST00000293780 RRBP1Q9P2E9 1410 aaKnown RBP24.77■■□□□ 1.56
CHRNE-201ENST00000293780 CADPSQ9ULU8 1353 aa24.77■■□□□ 1.56
CHRNE-201ENST00000293780 IGF1RP08069 1367 aa24.71■■□□□ 1.55
CHRNE-201ENST00000293780 CUX2O14529 1486 aa24.71■■□□□ 1.55
CHRNE-201ENST00000293780 ITGAEP38570 1179 aa24.7■■□□□ 1.54
CHRNE-201ENST00000293780 CCNB3Q8WWL7 1395 aa24.69■■□□□ 1.54
CHRNE-201ENST00000293780 NESP48681 1621 aa24.68■■□□□ 1.54
CHRNE-201ENST00000293780 MYT1Q01538 1121 aa24.64■■□□□ 1.54
CHRNE-201ENST00000293780 PRDM2Q13029 1718 aa24.63■■□□□ 1.53
CHRNE-201ENST00000293780 CARMIL1Q5VZK9 1371 aa24.59■■□□□ 1.53
CHRNE-201ENST00000293780 FGD5Q6ZNL6 1462 aa24.57■■□□□ 1.52
CHRNE-201ENST00000293780 TIAM1Q13009 1591 aa24.52■■□□□ 1.52
CHRNE-201ENST00000293780 FANCD2Q9BXW9 1451 aa24.51■■□□□ 1.51
CHRNE-201ENST00000293780 LAMC3Q9Y6N6 1575 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms