RNA–Protein interactions for RNA: ENST00000265354.5

SRF-201, Transcript of serum response factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRF, Length 4,202 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRF-201ENST00000265354 NISCHQ9Y2I1 1504 aa29.96■■■□□ 2.39
SRF-201ENST00000265354 SUPT5HO00267 1087 aaKnown RBP29.18■■■□□ 2.26
SRF-201ENST00000265354 DCAF8L2P0C7V8 631 aa29.1■■■□□ 2.25
SRF-201ENST00000265354 SHROOM4Q9ULL8 1493 aa28.92■■■□□ 2.22
SRF-201ENST00000265354 PCGF6Q9BYE7 350 aa28.2■■■□□ 2.11
SRF-201ENST00000265354 EHMT2Q96KQ7 1210 aa28.01■■■□□ 2.07
SRF-201ENST00000265354 PPARGC1BQ86YN6 1023 aaKnown RBP27.51■■□□□ 1.99
SRF-201ENST00000265354 HRCP23327 699 aa27.43■■□□□ 1.98
SRF-201ENST00000265354 FAM9AQ8IZU1 332 aaPredicted RBP27.39■■□□□ 1.98
SRF-201ENST00000265354 PELP1Q8IZL8 1130 aaKnown RBP27.28■■□□□ 1.96
SRF-201ENST00000265354 LOC105371045A0A1W2PR82 267 aa27.14■■□□□ 1.93
SRF-201ENST00000265354 TTBK1Q5TCY1 1321 aaPredicted RBP27.1■■□□□ 1.93
SRF-201ENST00000265354 CHIC1Q5VXU3 224 aa27.04■■□□□ 1.92
SRF-201ENST00000265354 MYT1Q01538 1121 aa26.71■■□□□ 1.87
SRF-201ENST00000265354 TRIM26Q12899 539 aaPredicted RBP26.65■■□□□ 1.86
SRF-201ENST00000265354 TRIM41Q8WV44 630 aa26.64■■□□□ 1.86
SRF-201ENST00000265354 CCER1Q8TC90 406 aaPredicted RBP26.58■■□□□ 1.85
SRF-201ENST00000265354 ZEB1P37275 1124 aaPredicted RBP26.52■■□□□ 1.84
SRF-201ENST00000265354 YTHDC1Q96MU7 727 aaKnown RBP26.44■■□□□ 1.82
SRF-201ENST00000265354 CENPBP07199 599 aaPredicted RBP26.31■■□□□ 1.8
SRF-201ENST00000265354 RANGAP1P46060 587 aaPredicted RBP26.21■■□□□ 1.79
SRF-201ENST00000265354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.18■■□□□ 1.78
SRF-201ENST00000265354 MYO15BQ96JP2 1530 aa25.98■■□□□ 1.75
SRF-201ENST00000265354 APLP2Q06481 763 aa25.9■■□□□ 1.74
SRF-201ENST00000265354 UBTFP17480 764 aaKnown RBP25.88■■□□□ 1.73
SRF-201ENST00000265354 GTF3C3Q9Y5Q9 886 aa25.85■■□□□ 1.73
SRF-201ENST00000265354 DIEXFQ68CQ4 756 aaKnown RBP25.82■■□□□ 1.72
SRF-201ENST00000265354 SCAF1Q9H7N4 1312 aaKnown RBP25.76■■□□□ 1.71
SRF-201ENST00000265354 HNRNPUL2Q1KMD3 747 aaKnown RBP25.67■■□□□ 1.7
SRF-201ENST00000265354 ACIN1Q9UKV3 1341 aaKnown RBP25.56■■□□□ 1.68
SRF-201ENST00000265354 NEUROD1Q13562 356 aa25.52■■□□□ 1.68
SRF-201ENST00000265354 DCAF1Q9Y4B6 1507 aa25.35■■□□□ 1.65
SRF-201ENST00000265354 ERICH6Q7L0X2 663 aa25.33■■□□□ 1.65
SRF-201ENST00000265354 ITGAEP38570 1179 aa25.32■■□□□ 1.64
SRF-201ENST00000265354 ATP1B4Q9UN42 357 aaPredicted RBP25.22■■□□□ 1.63
SRF-201ENST00000265354 BCANQ96GW7 911 aa25.12■■□□□ 1.61
SRF-201ENST00000265354 ZNF316A6NFI3 1004 aaPredicted RBP25.11■■□□□ 1.61
SRF-201ENST00000265354 ZCCHC6Q5VYS8 1495 aaKnown RBP25.06■■□□□ 1.6
SRF-201ENST00000265354 NEFLP07196 543 aa25.02■■□□□ 1.6
SRF-201ENST00000265354 MIER1Q8N108 512 aa24.88■■□□□ 1.57
SRF-201ENST00000265354 CNGB1Q14028 1251 aaPredicted RBP24.81■■□□□ 1.56
SRF-201ENST00000265354 CSRNP3Q8WYN3 585 aa24.63■■□□□ 1.53
SRF-201ENST00000265354 CCDC180Q9P1Z9 1646 aa24.59■■□□□ 1.53
SRF-201ENST00000265354 PABPN1Q86U42 306 aaKnown RBP eCLIP24.54■■□□□ 1.52
SRF-201ENST00000265354 ABCC9O60706 1549 aa24.51■■□□□ 1.51
SRF-201ENST00000265354 POLR3GLQ9BT43 218 aa24.47■■□□□ 1.51
SRF-201ENST00000265354 FAM50AQ14320 339 aaKnown RBP24.44■■□□□ 1.5
SRF-201ENST00000265354 FKBP8Q14318 412 aa24.44■■□□□ 1.5
SRF-201ENST00000265354 RSF1Q96T23 1441 aaPredicted RBP24.44■■□□□ 1.5
SRF-201ENST00000265354 SCRIBQ14160 1630 aa24.41■■□□□ 1.5
SRF-201ENST00000265354 BCL11AQ9H165 835 aa24.36■■□□□ 1.49
SRF-201ENST00000265354 HIRIP3Q9BW71 556 aaPredicted RBP24.35■■□□□ 1.49
SRF-201ENST00000265354 DDX10Q13206 875 aaKnown RBP24.34■■□□□ 1.49
SRF-201ENST00000265354 TRIM52Q96A61 297 aa24.32■■□□□ 1.48
SRF-201ENST00000265354 ANP32CO43423 234 aa24.2■■□□□ 1.46
SRF-201ENST00000265354 P3H3Q8IVL6 736 aa24.19■■□□□ 1.46
SRF-201ENST00000265354 IRX6P78412 446 aaPredicted RBP24.15■■□□□ 1.46
SRF-201ENST00000265354 CEP162Q5TB80 1403 aa24.15■■□□□ 1.46
SRF-201ENST00000265354 SUPT16HQ9Y5B9 1047 aaKnown RBP24.12■■□□□ 1.45
SRF-201ENST00000265354 CDK11AQ9UQ88 783 aaPredicted RBP24.08■■□□□ 1.44
SRF-201ENST00000265354 EIF5BO60841 1220 aaKnown RBP24.02■■□□□ 1.44
SRF-201ENST00000265354 HNRNPUQ00839 825 aaKnown RBP eCLIP23.98■■□□□ 1.43
SRF-201ENST00000265354 ANP32EQ9BTT0 268 aa23.98■■□□□ 1.43
SRF-201ENST00000265354 CECR2Q9BXF3 1484 aa23.97■■□□□ 1.43
SRF-201ENST00000265354 RB1CC1Q8TDY2 1594 aa23.96■■□□□ 1.43
SRF-201ENST00000265354 RTL5Q5HYW3 569 aaPredicted RBP23.95■■□□□ 1.42
SRF-201ENST00000265354 SOGA1O94964 1423 aa23.91■■□□□ 1.42
SRF-201ENST00000265354 SENP3-EIF4A1A0A087X0R7 540 aa23.91■■□□□ 1.42
SRF-201ENST00000265354 CLIP1P30622 1438 aa23.89■■□□□ 1.42
SRF-201ENST00000265354 ZNF326Q5BKZ1 582 aaKnown RBP23.86■■□□□ 1.41
SRF-201ENST00000265354 KCNH8Q96L42 1107 aa23.85■■□□□ 1.41
SRF-201ENST00000265354 ARID3CA6NKF2 412 aa23.85■■□□□ 1.41
SRF-201ENST00000265354 NBR1Q14596 966 aa23.83■■□□□ 1.41
SRF-201ENST00000265354 FAM9BQ8IZU0 186 aa23.83■■□□□ 1.41
SRF-201ENST00000265354 CLSPNQ9HAW4 1339 aa23.82■■□□□ 1.4
SRF-201ENST00000265354 SIN3AQ96ST3 1273 aa23.81■■□□□ 1.4
SRF-201ENST00000265354 TSHZ2Q9NRE2 1034 aa23.8■■□□□ 1.4
SRF-201ENST00000265354 TNIKQ9UKE5 1360 aa23.79■■□□□ 1.4
SRF-201ENST00000265354 NPM2Q86SE8 214 aaKnown RBP23.74■■□□□ 1.39
SRF-201ENST00000265354 DAXXQ9UER7 740 aaPredicted RBP23.72■■□□□ 1.39
SRF-201ENST00000265354 CCDC88BA6NC98 1476 aa23.7■■□□□ 1.38
SRF-201ENST00000265354 ABCC8Q09428 1581 aa23.66■■□□□ 1.38
SRF-201ENST00000265354 SALL2Q9Y467 1007 aaPredicted RBP23.65■■□□□ 1.38
SRF-201ENST00000265354 RBM19Q9Y4C8 960 aaKnown RBP23.64■■□□□ 1.37
SRF-201ENST00000265354 KANK4Q5T7N3 995 aaPredicted RBP23.63■■□□□ 1.37
SRF-201ENST00000265354 TONSLQ96HA7 1378 aa23.63■■□□□ 1.37
SRF-201ENST00000265354 GOLGA3Q08378 1498 aa23.62■■□□□ 1.37
SRF-201ENST00000265354 CHIC2Q9UKJ5 165 aa23.62■■□□□ 1.37
SRF-201ENST00000265354 MROH2BQ7Z745 1585 aa23.6■■□□□ 1.37
SRF-201ENST00000265354 WRNQ14191 1432 aaPredicted RBP eCLIP23.51■■□□□ 1.35
SRF-201ENST00000265354 RUSC2Q8N2Y8 1516 aa23.5■■□□□ 1.35
SRF-201ENST00000265354 MRS2Q9HD23 443 aa23.5■■□□□ 1.35
SRF-201ENST00000265354 ANP32AP39687 249 aaKnown RBP23.5■■□□□ 1.35
SRF-201ENST00000265354 RTN4Q9NQC3 1192 aaKnown RBP23.46■■□□□ 1.35
SRF-201ENST00000265354 B4GALNT3Q6L9W6 998 aa23.45■■□□□ 1.34
SRF-201ENST00000265354 CCDC136Q96JN2 1154 aa23.43■■□□□ 1.34
SRF-201ENST00000265354 PRKCSHP14314 528 aaPredicted RBP23.43■■□□□ 1.34
SRF-201ENST00000265354 EEA1Q15075 1411 aa23.4■■□□□ 1.34
SRF-201ENST00000265354 RRP7BPQ9NSQ0 103 aa23.38■■□□□ 1.33
SRF-201ENST00000265354 CEP164Q9UPV0 1460 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms