RNA–Protein interactions for RNA: ENST00000262965.9

TCF3-201, Transcript of transcription factor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCF3, Length 4,451 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-201ENST00000262965 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
TCF3-201ENST00000262965 DCAF8L2P0C7V8 631 aa23.37■■□□□ 1.33
TCF3-201ENST00000262965 SUPT5HO00267 1087 aaKnown RBP22.75■■□□□ 1.23
TCF3-201ENST00000262965 SHROOM4Q9ULL8 1493 aa22.33■■□□□ 1.16
TCF3-201ENST00000262965 EHMT2Q96KQ7 1210 aa22.08■■□□□ 1.12
TCF3-201ENST00000262965 PCGF6Q9BYE7 350 aa21.66■■□□□ 1.06
TCF3-201ENST00000262965 FAM9AQ8IZU1 332 aaPredicted RBP21.48■■□□□ 1.03
TCF3-201ENST00000262965 TTBK1Q5TCY1 1321 aaPredicted RBP21.36■■□□□ 1.01
TCF3-201ENST00000262965 PELP1Q8IZL8 1130 aaKnown RBP21.1■□□□□ 0.97
TCF3-201ENST00000262965 APLP2Q06481 763 aa21.03■□□□□ 0.96
TCF3-201ENST00000262965 CCER1Q8TC90 406 aaPredicted RBP20.9■□□□□ 0.94
TCF3-201ENST00000262965 RANGAP1P46060 587 aaPredicted RBP20.86■□□□□ 0.93
TCF3-201ENST00000262965 TRIM41Q8WV44 630 aa20.86■□□□□ 0.93
TCF3-201ENST00000262965 CENPBP07199 599 aaPredicted RBP20.84■□□□□ 0.93
TCF3-201ENST00000262965 ZEB1P37275 1124 aaPredicted RBP20.79■□□□□ 0.92
TCF3-201ENST00000262965 PPARGC1BQ86YN6 1023 aaKnown RBP20.78■□□□□ 0.92
TCF3-201ENST00000262965 YTHDC1Q96MU7 727 aaKnown RBP20.7■□□□□ 0.9
TCF3-201ENST00000262965 HRCP23327 699 aa20.67■□□□□ 0.9
TCF3-201ENST00000262965 LOC105371045A0A1W2PR82 267 aa20.56■□□□□ 0.88
TCF3-201ENST00000262965 UBTFP17480 764 aaKnown RBP20.53■□□□□ 0.88
TCF3-201ENST00000262965 TRIM26Q12899 539 aaPredicted RBP20.48■□□□□ 0.87
TCF3-201ENST00000262965 CHIC1Q5VXU3 224 aa20.42■□□□□ 0.86
TCF3-201ENST00000262965 ERICH6Q7L0X2 663 aa20.41■□□□□ 0.86
TCF3-201ENST00000262965 ATP1B4Q9UN42 357 aaPredicted RBP20.39■□□□□ 0.86
TCF3-201ENST00000262965 ABCC9O60706 1549 aa20.2■□□□□ 0.82
TCF3-201ENST00000262965 NEFLP07196 543 aa20.19■□□□□ 0.82
TCF3-201ENST00000262965 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.09■□□□□ 0.81
TCF3-201ENST00000262965 HNRNPUL2Q1KMD3 747 aaKnown RBP20.08■□□□□ 0.8
TCF3-201ENST00000262965 ITGAEP38570 1179 aa20.06■□□□□ 0.8
TCF3-201ENST00000262965 MYT1Q01538 1121 aa20.06■□□□□ 0.8
TCF3-201ENST00000262965 CCDC180Q9P1Z9 1646 aa19.93■□□□□ 0.78
TCF3-201ENST00000262965 DIEXFQ68CQ4 756 aaKnown RBP19.91■□□□□ 0.78
TCF3-201ENST00000262965 CNGB1Q14028 1251 aaPredicted RBP19.82■□□□□ 0.76
TCF3-201ENST00000262965 ZCCHC6Q5VYS8 1495 aaKnown RBP19.8■□□□□ 0.76
TCF3-201ENST00000262965 POLR3GLQ9BT43 218 aa19.75■□□□□ 0.75
TCF3-201ENST00000262965 GTF3C3Q9Y5Q9 886 aa19.74■□□□□ 0.75
TCF3-201ENST00000262965 PABPN1Q86U42 306 aaKnown RBP eCLIP19.7■□□□□ 0.741e-6■□□□□ 9.3
TCF3-201ENST00000262965 BCANQ96GW7 911 aa19.57■□□□□ 0.72
TCF3-201ENST00000262965 DAXXQ9UER7 740 aaPredicted RBP19.42■□□□□ 0.7
TCF3-201ENST00000262965 ACIN1Q9UKV3 1341 aaKnown RBP19.42■□□□□ 0.7
TCF3-201ENST00000262965 SCRIBQ14160 1630 aa19.41■□□□□ 0.7
TCF3-201ENST00000262965 NEUROD1Q13562 356 aa19.41■□□□□ 0.7
TCF3-201ENST00000262965 FAM50AQ14320 339 aaKnown RBP19.38■□□□□ 0.69
TCF3-201ENST00000262965 ZNF316A6NFI3 1004 aaPredicted RBP19.35■□□□□ 0.69
TCF3-201ENST00000262965 MYT1LQ9UL68 1186 aa19.24■□□□□ 0.67
TCF3-201ENST00000262965 RTL5Q5HYW3 569 aaPredicted RBP19.23■□□□□ 0.67
TCF3-201ENST00000262965 RB1CC1Q8TDY2 1594 aa19.18■□□□□ 0.66
TCF3-201ENST00000262965 TRIM52Q96A61 297 aa19.18■□□□□ 0.66
TCF3-201ENST00000262965 NACADO15069 1562 aa19.15■□□□□ 0.66
TCF3-201ENST00000262965 ANP32CO43423 234 aa19.14■□□□□ 0.65
TCF3-201ENST00000262965 CLSPNQ9HAW4 1339 aa19.12■□□□□ 0.65
TCF3-201ENST00000262965 DCAF1Q9Y4B6 1507 aa19.1■□□□□ 0.65
TCF3-201ENST00000262965 SCAF1Q9H7N4 1312 aaKnown RBP19.1■□□□□ 0.65
TCF3-201ENST00000262965 ZNF326Q5BKZ1 582 aaKnown RBP19.09■□□□□ 0.65
TCF3-201ENST00000262965 SLC4A1APQ9BWU0 796 aaKnown RBP19.08■□□□□ 0.64
TCF3-201ENST00000262965 CDK11AQ9UQ88 783 aaPredicted RBP19.06■□□□□ 0.64
TCF3-201ENST00000262965 CSRNP3Q8WYN3 585 aa19.05■□□□□ 0.64
TCF3-201ENST00000262965 P3H3Q8IVL6 736 aa19■□□□□ 0.63
TCF3-201ENST00000262965 FKBP8Q14318 412 aa18.95■□□□□ 0.62
TCF3-201ENST00000262965 ARID3CA6NKF2 412 aa18.9■□□□□ 0.62
TCF3-201ENST00000262965 MYO15BQ96JP2 1530 aa18.89■□□□□ 0.61
TCF3-201ENST00000262965 DDX10Q13206 875 aaKnown RBP18.87■□□□□ 0.61
TCF3-201ENST00000262965 RSF1Q96T23 1441 aaPredicted RBP18.86■□□□□ 0.61
TCF3-201ENST00000262965 MIER1Q8N108 512 aa18.86■□□□□ 0.61
TCF3-201ENST00000262965 NPM2Q86SE8 214 aaKnown RBP18.79■□□□□ 0.6
TCF3-201ENST00000262965 HNRNPUQ00839 825 aaKnown RBP eCLIP18.77■□□□□ 0.6
TCF3-201ENST00000262965 BCL11AQ9H165 835 aa18.76■□□□□ 0.59
TCF3-201ENST00000262965 HIRIP3Q9BW71 556 aaPredicted RBP18.72■□□□□ 0.59
TCF3-201ENST00000262965 ANP32AP39687 249 aaKnown RBP18.7■□□□□ 0.58
TCF3-201ENST00000262965 FAM9BQ8IZU0 186 aa18.69■□□□□ 0.58
TCF3-201ENST00000262965 IRX6P78412 446 aaPredicted RBP18.66■□□□□ 0.58
TCF3-201ENST00000262965 FBLN2P98095 1184 aa18.66■□□□□ 0.58
TCF3-201ENST00000262965 SALL2Q9Y467 1007 aaPredicted RBP18.65■□□□□ 0.58
TCF3-201ENST00000262965 CECR2Q9BXF3 1484 aa18.63■□□□□ 0.57
TCF3-201ENST00000262965 TONSLQ96HA7 1378 aa18.62■□□□□ 0.57
TCF3-201ENST00000262965 BAZ1AQ9NRL2 1556 aaPredicted RBP18.61■□□□□ 0.57
TCF3-201ENST00000262965 ZNF777Q9ULD5 760 aaPredicted RBP18.61■□□□□ 0.57
TCF3-201ENST00000262965 CANXP27824 592 aaKnown RBP18.6■□□□□ 0.57
TCF3-201ENST00000262965 NBR1Q14596 966 aa18.59■□□□□ 0.57
TCF3-201ENST00000262965 EIF5BO60841 1220 aaKnown RBP18.56■□□□□ 0.56
TCF3-201ENST00000262965 CHIC2Q9UKJ5 165 aa18.53■□□□□ 0.56
TCF3-201ENST00000262965 BAZ1BQ9UIG0 1483 aaKnown RBP18.53■□□□□ 0.56
TCF3-201ENST00000262965 SENP3-EIF4A1A0A087X0R7 540 aa18.48■□□□□ 0.55
TCF3-201ENST00000262965 CCDC136Q96JN2 1154 aa18.48■□□□□ 0.55
TCF3-201ENST00000262965 MRS2Q9HD23 443 aa18.45■□□□□ 0.54
TCF3-201ENST00000262965 ZBTB47Q9UFB7 747 aaPredicted RBP18.44■□□□□ 0.54
TCF3-201ENST00000262965 MROH2BQ7Z745 1585 aa18.42■□□□□ 0.54
TCF3-201ENST00000262965 TMC1Q8TDI8 760 aa18.39■□□□□ 0.54
TCF3-201ENST00000262965 CLIP1P30622 1438 aa18.38■□□□□ 0.53
TCF3-201ENST00000262965 SLC24A1O60721 1099 aa18.37■□□□□ 0.53
TCF3-201ENST00000262965 ARXQ96QS3 562 aa18.36■□□□□ 0.53
TCF3-201ENST00000262965 CEP162Q5TB80 1403 aa18.34■□□□□ 0.53
TCF3-201ENST00000262965 WRNQ14191 1432 aaPredicted RBP eCLIP18.33■□□□□ 0.531e-6■■■■■ 58.5
TCF3-201ENST00000262965 KDM2AQ9Y2K7 1162 aa18.31■□□□□ 0.52
TCF3-201ENST00000262965 SUPT16HQ9Y5B9 1047 aaKnown RBP18.29■□□□□ 0.52
TCF3-201ENST00000262965 ANP32EQ9BTT0 268 aa18.27■□□□□ 0.52
TCF3-201ENST00000262965 RRP7BPQ9NSQ0 103 aa18.27■□□□□ 0.51
TCF3-201ENST00000262965 EEA1Q15075 1411 aa18.26■□□□□ 0.51
TCF3-201ENST00000262965 NEFMP07197 916 aa18.25■□□□□ 0.51
TCF3-201ENST00000262965 CHGAP10645 457 aaKnown RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms