RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 NISCHQ9Y2I1 1504 aa16.97■□□□□ 0.31
PTPN3-201ENST00000262539 CCDC180Q9P1Z9 1646 aa14.59□□□□□ -0.07
PTPN3-201ENST00000262539 DCAF8L2P0C7V8 631 aa14.3□□□□□ -0.12
PTPN3-201ENST00000262539 ZCCHC6Q5VYS8 1495 aaKnown RBP14.26□□□□□ -0.13
PTPN3-201ENST00000262539 DCAF1Q9Y4B6 1507 aa14.24□□□□□ -0.13
PTPN3-201ENST00000262539 MYO15BQ96JP2 1530 aa14.1□□□□□ -0.15
PTPN3-201ENST00000262539 SHROOM4Q9ULL8 1493 aa13.86□□□□□ -0.19
PTPN3-201ENST00000262539 NACADO15069 1562 aa13.81□□□□□ -0.2
PTPN3-201ENST00000262539 SUPT5HO00267 1087 aaKnown RBP13.78□□□□□ -0.2
PTPN3-201ENST00000262539 ABCC9O60706 1549 aa13.69□□□□□ -0.22
PTPN3-201ENST00000262539 RB1CC1Q8TDY2 1594 aa13.63□□□□□ -0.23
PTPN3-201ENST00000262539 SCRIBQ14160 1630 aa13.29□□□□□ -0.28
PTPN3-201ENST00000262539 BAZ1AQ9NRL2 1556 aaPredicted RBP13.26□□□□□ -0.29
PTPN3-201ENST00000262539 RSF1Q96T23 1441 aaPredicted RBP13.26□□□□□ -0.29
PTPN3-201ENST00000262539 CHIC1Q5VXU3 224 aa13.25□□□□□ -0.29
PTPN3-201ENST00000262539 TRIM41Q8WV44 630 aa13.17□□□□□ -0.3
PTPN3-201ENST00000262539 EEA1Q15075 1411 aa13□□□□□ -0.33
PTPN3-201ENST00000262539 PABPN1Q86U42 306 aaKnown RBP eCLIP12.96□□□□□ -0.33
PTPN3-201ENST00000262539 SMARCA2P51531 1590 aa12.96□□□□□ -0.33
PTPN3-201ENST00000262539 CECR2Q9BXF3 1484 aa12.95□□□□□ -0.34
PTPN3-201ENST00000262539 MROH2BQ7Z745 1585 aa12.9□□□□□ -0.34
PTPN3-201ENST00000262539 TOP2AP11388 1531 aaKnown RBP12.88□□□□□ -0.35
PTPN3-201ENST00000262539 BAZ1BQ9UIG0 1483 aaKnown RBP12.86□□□□□ -0.35
PTPN3-201ENST00000262539 EHMT2Q96KQ7 1210 aa12.82□□□□□ -0.36
PTPN3-201ENST00000262539 SMARCA4P51532 1647 aa12.82□□□□□ -0.36
PTPN3-201ENST00000262539 NCAPD3P42695 1498 aa12.81□□□□□ -0.36
PTPN3-201ENST00000262539 ATAD2BQ9ULI0 1458 aa12.79□□□□□ -0.36
PTPN3-201ENST00000262539 APLP2Q06481 763 aa12.76□□□□□ -0.37
PTPN3-201ENST00000262539 PEG3Q9GZU2 1588 aa12.75□□□□□ -0.37
PTPN3-201ENST00000262539 CSRNP3Q8WYN3 585 aa12.73□□□□□ -0.37
PTPN3-201ENST00000262539 FAM9AQ8IZU1 332 aaPredicted RBP12.72□□□□□ -0.37
PTPN3-201ENST00000262539 WRNQ14191 1432 aaPredicted RBP eCLIP12.71□□□□□ -0.37
PTPN3-201ENST00000262539 ZEB1P37275 1124 aaPredicted RBP12.7□□□□□ -0.38
PTPN3-201ENST00000262539 HMGXB3Q12766 1538 aa12.7□□□□□ -0.38
PTPN3-201ENST00000262539 CCDC88BA6NC98 1476 aa12.67□□□□□ -0.38
PTPN3-201ENST00000262539 BICRAQ9NZM4 1560 aa12.67□□□□□ -0.38
PTPN3-201ENST00000262539 UBTFP17480 764 aaKnown RBP12.63□□□□□ -0.39
PTPN3-201ENST00000262539 TRIM26Q12899 539 aaPredicted RBP12.62□□□□□ -0.39
PTPN3-201ENST00000262539 CADPSQ9ULU8 1353 aa12.57□□□□□ -0.4
PTPN3-201ENST00000262539 TNIKQ9UKE5 1360 aa12.56□□□□□ -0.4
PTPN3-201ENST00000262539 CEP164Q9UPV0 1460 aa12.55□□□□□ -0.4
PTPN3-201ENST00000262539 WIZO95785 1651 aa12.54□□□□□ -0.4
PTPN3-201ENST00000262539 EIF4G1Q04637 1599 aaKnown RBP12.54□□□□□ -0.4
PTPN3-201ENST00000262539 GOLGA3Q08378 1498 aa12.53□□□□□ -0.4
PTPN3-201ENST00000262539 KIF27Q86VH2 1401 aa12.53□□□□□ -0.4
PTPN3-201ENST00000262539 ABCC8Q09428 1581 aa12.52□□□□□ -0.4
PTPN3-201ENST00000262539 CFTRP13569 1480 aa12.48□□□□□ -0.41
PTPN3-201ENST00000262539 PDS5BQ9NTI5 1447 aa12.48□□□□□ -0.41
PTPN3-201ENST00000262539 LOC105371045A0A1W2PR82 267 aa12.46□□□□□ -0.42
PTPN3-201ENST00000262539 PELP1Q8IZL8 1130 aaKnown RBP12.42□□□□□ -0.42
PTPN3-201ENST00000262539 PCGF6Q9BYE7 350 aa12.4□□□□□ -0.42
PTPN3-201ENST00000262539 ACIN1Q9UKV3 1341 aaKnown RBP12.36□□□□□ -0.43
PTPN3-201ENST00000262539 CLIP1P30622 1438 aa12.35□□□□□ -0.43
PTPN3-201ENST00000262539 ATP1B4Q9UN42 357 aaPredicted RBP12.33□□□□□ -0.44
PTPN3-201ENST00000262539 TTBK1Q5TCY1 1321 aaPredicted RBP12.33□□□□□ -0.44
PTPN3-201ENST00000262539 CEP162Q5TB80 1403 aa12.33□□□□□ -0.44
PTPN3-201ENST00000262539 RANGAP1P46060 587 aaPredicted RBP12.32□□□□□ -0.44
PTPN3-201ENST00000262539 HRCP23327 699 aa12.32□□□□□ -0.44
PTPN3-201ENST00000262539 ERICH3Q5RHP9 1530 aa12.26□□□□□ -0.45
PTPN3-201ENST00000262539 SOGA1O94964 1423 aa12.25□□□□□ -0.45
PTPN3-201ENST00000262539 FHAD1B1AJZ9 1412 aa12.25□□□□□ -0.45
PTPN3-201ENST00000262539 FANCD2Q9BXW9 1451 aa12.25□□□□□ -0.45
PTPN3-201ENST00000262539 UNC13AQ9UPW8 1703 aa12.25□□□□□ -0.45
PTPN3-201ENST00000262539 VPS8Q8N3P4 1428 aa12.24□□□□□ -0.45
PTPN3-201ENST00000262539 CARMIL1Q5VZK9 1371 aa12.23□□□□□ -0.45
PTPN3-201ENST00000262539 CUX2O14529 1486 aa12.23□□□□□ -0.45
PTPN3-201ENST00000262539 TOP2BQ02880 1626 aa12.23□□□□□ -0.45
PTPN3-201ENST00000262539 LAMC3Q9Y6N6 1575 aa12.2□□□□□ -0.46
PTPN3-201ENST00000262539 PRXQ9BXM0 1461 aa12.19□□□□□ -0.46
PTPN3-201ENST00000262539 KIF21BO75037 1637 aa12.19□□□□□ -0.46
PTPN3-201ENST00000262539 RAPGEF2Q9Y4G8 1499 aa12.19□□□□□ -0.46
PTPN3-201ENST00000262539 CDK11AQ9UQ88 783 aaPredicted RBP12.17□□□□□ -0.46
PTPN3-201ENST00000262539 CC2D2AQ9P2K1 1620 aa12.16□□□□□ -0.46
PTPN3-201ENST00000262539 CLSPNQ9HAW4 1339 aa12.16□□□□□ -0.46
PTPN3-201ENST00000262539 MYT1LQ9UL68 1186 aa12.15□□□□□ -0.46
PTPN3-201ENST00000262539 CCER1Q8TC90 406 aaPredicted RBP12.14□□□□□ -0.47
PTPN3-201ENST00000262539 IGF1RP08069 1367 aa12.12□□□□□ -0.47
PTPN3-201ENST00000262539 FMN1Q68DA7 1419 aa12.11□□□□□ -0.47
PTPN3-201ENST00000262539 ABCA10Q8WWZ4 1543 aa12.11□□□□□ -0.47
PTPN3-201ENST00000262539 DNMBPQ6XZF7 1577 aa12.11□□□□□ -0.47
PTPN3-201ENST00000262539 FGD5Q6ZNL6 1462 aa12.1□□□□□ -0.47
PTPN3-201ENST00000262539 SYNJ1O43426 1573 aa12.09□□□□□ -0.47
PTPN3-201ENST00000262539 BIVM-ERCC5R4GMW8 1640 aa12.07□□□□□ -0.48
PTPN3-201ENST00000262539 ERICH6Q7L0X2 663 aa12.06□□□□□ -0.48
PTPN3-201ENST00000262539 TOPBP1Q92547 1522 aa12.06□□□□□ -0.48
PTPN3-201ENST00000262539 CUX1P39880 1505 aa12.05□□□□□ -0.48
PTPN3-201ENST00000262539 IFT140Q96RY7 1462 aa12.03□□□□□ -0.48
PTPN3-201ENST00000262539 ERCC6Q03468 1493 aa12.03□□□□□ -0.48
PTPN3-201ENST00000262539 MRC2Q9UBG0 1479 aa12.03□□□□□ -0.48
PTPN3-201ENST00000262539 EFCAB5A4FU69 1503 aa12.01□□□□□ -0.49
PTPN3-201ENST00000262539 POLA1P09884 1462 aaPredicted RBP12.01□□□□□ -0.49
PTPN3-201ENST00000262539 GAPVD1Q14C86 1478 aa11.99□□□□□ -0.49
PTPN3-201ENST00000262539 MAP3K1Q13233 1512 aa11.99□□□□□ -0.49
PTPN3-201ENST00000262539 TIMELESSQ9UNS1 1208 aa11.98□□□□□ -0.49
PTPN3-201ENST00000262539 GRIN2BQ13224 1484 aa11.98□□□□□ -0.49
PTPN3-201ENST00000262539 CARMIL2Q6F5E8 1435 aa11.97□□□□□ -0.49
PTPN3-201ENST00000262539 MTUS2Q5JR59 1369 aa11.97□□□□□ -0.49
PTPN3-201ENST00000262539 CHMP7Q8WUX9 453 aaPredicted RBP11.96□□□□□ -0.49
PTPN3-201ENST00000262539 RUSC2Q8N2Y8 1516 aa11.95□□□□□ -0.5
PTPN3-201ENST00000262539 TDRD9Q8NDG6 1382 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms