RNA–Protein interactions for RNA: ENST00000175756.9

PTPN18-201, Transcript of protein tyrosine phosphatase, non-receptor type 18, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN18, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN18-201ENST00000175756 NISCHQ9Y2I1 1504 aa32.29■■■□□ 2.76
PTPN18-201ENST00000175756 SHROOM4Q9ULL8 1493 aa29.65■■■□□ 2.34
PTPN18-201ENST00000175756 SUPT5HO00267 1087 aaKnown RBP29.55■■■□□ 2.32
PTPN18-201ENST00000175756 DCAF8L2P0C7V8 631 aa29.29■■■□□ 2.28
PTPN18-201ENST00000175756 PCGF6Q9BYE7 350 aa28.36■■■□□ 2.13
PTPN18-201ENST00000175756 CHIC1Q5VXU3 224 aa27.97■■■□□ 2.07
PTPN18-201ENST00000175756 HRCP23327 699 aa27.93■■■□□ 2.06
PTPN18-201ENST00000175756 EHMT2Q96KQ7 1210 aa27.89■■■□□ 2.06
PTPN18-201ENST00000175756 PPARGC1BQ86YN6 1023 aaKnown RBP27.83■■■□□ 2.05
PTPN18-201ENST00000175756 LOC105371045A0A1W2PR82 267 aa27.74■■■□□ 2.03
PTPN18-201ENST00000175756 FAM9AQ8IZU1 332 aaPredicted RBP27.57■■■□□ 2
PTPN18-201ENST00000175756 MYO15BQ96JP2 1530 aa27.41■■□□□ 1.98
PTPN18-201ENST00000175756 ZCCHC6Q5VYS8 1495 aaKnown RBP27.16■■□□□ 1.94
PTPN18-201ENST00000175756 TRIM41Q8WV44 630 aa27.15■■□□□ 1.94
PTPN18-201ENST00000175756 TRIM26Q12899 539 aaPredicted RBP27.14■■□□□ 1.94
PTPN18-201ENST00000175756 TTBK1Q5TCY1 1321 aaPredicted RBP27■■□□□ 1.91
PTPN18-201ENST00000175756 ZEB1P37275 1124 aaPredicted RBP26.76■■□□□ 1.87
PTPN18-201ENST00000175756 CCER1Q8TC90 406 aaPredicted RBP26.62■■□□□ 1.85
PTPN18-201ENST00000175756 DCAF1Q9Y4B6 1507 aa26.57■■□□□ 1.84
PTPN18-201ENST00000175756 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.47■■□□□ 1.83
PTPN18-201ENST00000175756 CCDC180Q9P1Z9 1646 aa26.47■■□□□ 1.83
PTPN18-201ENST00000175756 RANGAP1P46060 587 aaPredicted RBP26.19■■□□□ 1.78
PTPN18-201ENST00000175756 PELP1Q8IZL8 1130 aaKnown RBP26.17■■□□□ 1.78
PTPN18-201ENST00000175756 YTHDC1Q96MU7 727 aaKnown RBP26.16■■□□□ 1.78
PTPN18-201ENST00000175756 UBTFP17480 764 aaKnown RBP26.15■■□□□ 1.78
PTPN18-201ENST00000175756 SCAF1Q9H7N4 1312 aaKnown RBP26.12■■□□□ 1.77
PTPN18-201ENST00000175756 CENPBP07199 599 aaPredicted RBP26.09■■□□□ 1.77
PTPN18-201ENST00000175756 SCRIBQ14160 1630 aa26.08■■□□□ 1.77
PTPN18-201ENST00000175756 RSF1Q96T23 1441 aaPredicted RBP26.03■■□□□ 1.76
PTPN18-201ENST00000175756 DIEXFQ68CQ4 756 aaKnown RBP26■■□□□ 1.75
PTPN18-201ENST00000175756 ABCC9O60706 1549 aa25.92■■□□□ 1.74
PTPN18-201ENST00000175756 GTF3C3Q9Y5Q9 886 aa25.88■■□□□ 1.73
PTPN18-201ENST00000175756 HNRNPUL2Q1KMD3 747 aaKnown RBP25.87■■□□□ 1.73
PTPN18-201ENST00000175756 APLP2Q06481 763 aa25.85■■□□□ 1.73
PTPN18-201ENST00000175756 NEUROD1Q13562 356 aa25.82■■□□□ 1.72
PTPN18-201ENST00000175756 ACIN1Q9UKV3 1341 aaKnown RBP25.81■■□□□ 1.72
PTPN18-201ENST00000175756 RB1CC1Q8TDY2 1594 aa25.68■■□□□ 1.7
PTPN18-201ENST00000175756 CECR2Q9BXF3 1484 aa25.6■■□□□ 1.69
PTPN18-201ENST00000175756 ZNF316A6NFI3 1004 aaPredicted RBP25.47■■□□□ 1.67
PTPN18-201ENST00000175756 PABPN1Q86U42 306 aaKnown RBP eCLIP25.47■■□□□ 1.672e-6■■□□□ 13.9
PTPN18-201ENST00000175756 CSRNP3Q8WYN3 585 aa25.44■■□□□ 1.66
PTPN18-201ENST00000175756 ITGAEP38570 1179 aa25.36■■□□□ 1.65
PTPN18-201ENST00000175756 MROH2BQ7Z745 1585 aa25.34■■□□□ 1.65
PTPN18-201ENST00000175756 MIER1Q8N108 512 aa25.26■■□□□ 1.63
PTPN18-201ENST00000175756 CEP162Q5TB80 1403 aa25.23■■□□□ 1.63
PTPN18-201ENST00000175756 SOGA1O94964 1423 aa25.15■■□□□ 1.62
PTPN18-201ENST00000175756 ATP1B4Q9UN42 357 aaPredicted RBP25.15■■□□□ 1.62
PTPN18-201ENST00000175756 WIZO95785 1651 aa25.14■■□□□ 1.61
PTPN18-201ENST00000175756 ABCC8Q09428 1581 aa25.11■■□□□ 1.61
PTPN18-201ENST00000175756 CCDC88BA6NC98 1476 aa25.09■■□□□ 1.61
PTPN18-201ENST00000175756 MYT1Q01538 1121 aa24.96■■□□□ 1.59
PTPN18-201ENST00000175756 TNIKQ9UKE5 1360 aa24.96■■□□□ 1.59
PTPN18-201ENST00000175756 NACADO15069 1562 aa24.91■■□□□ 1.58
PTPN18-201ENST00000175756 BCANQ96GW7 911 aa24.89■■□□□ 1.57
PTPN18-201ENST00000175756 RUSC2Q8N2Y8 1516 aa24.89■■□□□ 1.57
PTPN18-201ENST00000175756 CLIP1P30622 1438 aa24.83■■□□□ 1.57
PTPN18-201ENST00000175756 BAZ1AQ9NRL2 1556 aaPredicted RBP24.81■■□□□ 1.56
PTPN18-201ENST00000175756 GOLGA3Q08378 1498 aa24.78■■□□□ 1.56
PTPN18-201ENST00000175756 WRNQ14191 1432 aaPredicted RBP eCLIP24.74■■□□□ 1.55
PTPN18-201ENST00000175756 FAM50AQ14320 339 aaKnown RBP24.7■■□□□ 1.54
PTPN18-201ENST00000175756 EEA1Q15075 1411 aa24.67■■□□□ 1.54
PTPN18-201ENST00000175756 NEFLP07196 543 aa24.65■■□□□ 1.54
PTPN18-201ENST00000175756 P3H3Q8IVL6 736 aa24.61■■□□□ 1.53
PTPN18-201ENST00000175756 HIRIP3Q9BW71 556 aaPredicted RBP24.58■■□□□ 1.52
PTPN18-201ENST00000175756 DDX10Q13206 875 aaKnown RBP24.55■■□□□ 1.52
PTPN18-201ENST00000175756 CEP164Q9UPV0 1460 aa24.54■■□□□ 1.52
PTPN18-201ENST00000175756 TOP2AP11388 1531 aaKnown RBP24.53■■□□□ 1.52
PTPN18-201ENST00000175756 KANK4Q5T7N3 995 aaPredicted RBP24.52■■□□□ 1.52
PTPN18-201ENST00000175756 SUPT16HQ9Y5B9 1047 aaKnown RBP24.46■■□□□ 1.51
PTPN18-201ENST00000175756 FKBP8Q14318 412 aa24.45■■□□□ 1.5
PTPN18-201ENST00000175756 VPS8Q8N3P4 1428 aa24.44■■□□□ 1.5
PTPN18-201ENST00000175756 CNGB1Q14028 1251 aaPredicted RBP24.42■■□□□ 1.5
PTPN18-201ENST00000175756 SMARCA2P51531 1590 aa24.41■■□□□ 1.5
PTPN18-201ENST00000175756 TRIM52Q96A61 297 aa24.4■■□□□ 1.5
PTPN18-201ENST00000175756 RAPGEF2Q9Y4G8 1499 aa24.38■■□□□ 1.49
PTPN18-201ENST00000175756 KCNH8Q96L42 1107 aa24.37■■□□□ 1.49
PTPN18-201ENST00000175756 SMARCA4P51532 1647 aa24.37■■□□□ 1.49
PTPN18-201ENST00000175756 SIN3AQ96ST3 1273 aa24.32■■□□□ 1.48
PTPN18-201ENST00000175756 ERICH6Q7L0X2 663 aa24.31■■□□□ 1.48
PTPN18-201ENST00000175756 ANP32CO43423 234 aa24.28■■□□□ 1.48
PTPN18-201ENST00000175756 BAZ1BQ9UIG0 1483 aaKnown RBP24.25■■□□□ 1.47
PTPN18-201ENST00000175756 DHX57Q6P158 1386 aaKnown RBP24.23■■□□□ 1.47
PTPN18-201ENST00000175756 POLR3GLQ9BT43 218 aa24.16■■□□□ 1.46
PTPN18-201ENST00000175756 CLSPNQ9HAW4 1339 aa24.16■■□□□ 1.46
PTPN18-201ENST00000175756 IRX6P78412 446 aaPredicted RBP24.14■■□□□ 1.46
PTPN18-201ENST00000175756 CCNB3Q8WWL7 1395 aa24.14■■□□□ 1.45
PTPN18-201ENST00000175756 TSHZ2Q9NRE2 1034 aa24.12■■□□□ 1.45
PTPN18-201ENST00000175756 ARID3CA6NKF2 412 aa24.09■■□□□ 1.45
PTPN18-201ENST00000175756 SYNJ1O43426 1573 aa24.07■■□□□ 1.44
PTPN18-201ENST00000175756 HNRNPUQ00839 825 aaKnown RBP eCLIP24.04■■□□□ 1.44
PTPN18-201ENST00000175756 EIF4G1Q04637 1599 aaKnown RBP24.03■■□□□ 1.44
PTPN18-201ENST00000175756 RAB3GAP2Q9H2M9 1393 aa24.03■■□□□ 1.44
PTPN18-201ENST00000175756 KIF27Q86VH2 1401 aa24.02■■□□□ 1.44
PTPN18-201ENST00000175756 KIF21BO75037 1637 aa24.02■■□□□ 1.44
PTPN18-201ENST00000175756 TONSLQ96HA7 1378 aa23.99■■□□□ 1.43
PTPN18-201ENST00000175756 ANP32EQ9BTT0 268 aa23.99■■□□□ 1.43
PTPN18-201ENST00000175756 ATAD2BQ9ULI0 1458 aa23.97■■□□□ 1.43
PTPN18-201ENST00000175756 CHIC2Q9UKJ5 165 aa23.97■■□□□ 1.43
PTPN18-201ENST00000175756 CDK11AQ9UQ88 783 aaPredicted RBP23.9■■□□□ 1.42
PTPN18-201ENST00000175756 FAM9BQ8IZU0 186 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms