RNA–Protein interactions for RNA: ENSMUST00000078886.9

Spen-201, Transcript of Msx2-interacting protein, mousemouse

APPRIS ALT2 TSL 5 BASIC

Gene Spen, Length 12,082 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Spen-201ENSMUST00000078886 Rhox8Q6VSS7 320 aa13.93□□□□□ -0.18
Spen-201ENSMUST00000078886 Cngb1E1AZ71 1325 aa13.47□□□□□ -0.25
Spen-201ENSMUST00000078886 Las1lA2BE28 776 aaKnown RBP13.45□□□□□ -0.26
Spen-201ENSMUST00000078886 Rpgrip1Q9EPQ2 1331 aa13.35□□□□□ -0.27
Spen-201ENSMUST00000078886 Pelp1Q9DBD5 1123 aaKnown RBP13.28□□□□□ -0.28
Spen-201ENSMUST00000078886 Amer1Q7TS75 1132 aa13.16□□□□□ -0.3
Spen-201ENSMUST00000078886 Ehmt2Q9Z148 1263 aaKnown RBP12.93□□□□□ -0.34
Spen-201ENSMUST00000078886 Wdr66E9Q743 1299 aa12.85□□□□□ -0.35
Spen-201ENSMUST00000078886 CenpbP27790 599 aa12.76□□□□□ -0.37
Spen-201ENSMUST00000078886 4930567H17RikQ3V0K5 233 aa12.71□□□□□ -0.37
Spen-201ENSMUST00000078886 Zeb1Q64318 1117 aa12.62□□□□□ -0.39
Spen-201ENSMUST00000078886 Ttbk1Q6PCN3 1308 aa12.52□□□□□ -0.4
Spen-201ENSMUST00000078886 Ube2uB1AUC4 352 aa12.38□□□□□ -0.43
Spen-201ENSMUST00000078886 Myt1Q8CFC2 1127 aa12.37□□□□□ -0.43
Spen-201ENSMUST00000078886 4933416C03RikQ3V063 378 aa12.33□□□□□ -0.44
Spen-201ENSMUST00000078886 Rtl1Q7M732 1744 aa12.3□□□□□ -0.44
Spen-201ENSMUST00000078886 Ccdc136Q3TVA9 1136 aa12.29□□□□□ -0.44
Spen-201ENSMUST00000078886 Esf1Q3V1V3 845 aaKnown RBP12.2□□□□□ -0.46
Spen-201ENSMUST00000078886 Gab3Q8BSM5 595 aa12.17□□□□□ -0.46
Spen-201ENSMUST00000078886 DiexfQ8BTT6 772 aaKnown RBP12.16□□□□□ -0.46
Spen-201ENSMUST00000078886 Slc24a1Q91WD8 1130 aa12.14□□□□□ -0.47
Spen-201ENSMUST00000078886 Acin1Q9JIX8 1338 aaKnown RBP12.14□□□□□ -0.47
Spen-201ENSMUST00000078886 Stra8P70278 393 aa12.11□□□□□ -0.47
Spen-201ENSMUST00000078886 NefmP08553 848 aa12.07□□□□□ -0.48
Spen-201ENSMUST00000078886 Trim41Q5NCC3 630 aa12.05□□□□□ -0.48
Spen-201ENSMUST00000078886 Npm2Q80W85 207 aa12.04□□□□□ -0.48
Spen-201ENSMUST00000078886 Myt1lP97500 1187 aa11.98□□□□□ -0.49
Spen-201ENSMUST00000078886 Cdk11bP24788 784 aaKnown RBP11.93□□□□□ -0.5
Spen-201ENSMUST00000078886 Ccdc180J3QNE4 1664 aa11.92□□□□□ -0.5
Spen-201ENSMUST00000078886 UbtfP25976 765 aaKnown RBP11.86□□□□□ -0.51
Spen-201ENSMUST00000078886 Pcgf6Q99NA9 353 aa11.84□□□□□ -0.51
Spen-201ENSMUST00000078886 Tnnt3Q9QZ47 272 aa11.83□□□□□ -0.52
Spen-201ENSMUST00000078886 Rtl5Q5DTT4 599 aa11.81□□□□□ -0.52
Spen-201ENSMUST00000078886 NeflP08551 543 aa11.78□□□□□ -0.52
Spen-201ENSMUST00000078886 Eif5bQ05D44 1216 aaKnown RBP11.74□□□□□ -0.53
Spen-201ENSMUST00000078886 Nop58Q6DFW4 536 aaKnown RBP11.73□□□□□ -0.53
Spen-201ENSMUST00000078886 NrdcQ8BHG1 1161 aa11.73□□□□□ -0.53
Spen-201ENSMUST00000078886 Ythdc1E9Q5K9 736 aaKnown RBP11.71□□□□□ -0.53
Spen-201ENSMUST00000078886 HrcG5E8J6 738 aa11.71□□□□□ -0.54
Spen-201ENSMUST00000078886 DaxxO35613 739 aa11.69□□□□□ -0.54
Spen-201ENSMUST00000078886 CatipB9EKE5 520 aa11.61□□□□□ -0.55
Spen-201ENSMUST00000078886 Anp32bQ9EST5 272 aaKnown RBP11.59□□□□□ -0.55
Spen-201ENSMUST00000078886 NischQ80TM9 1593 aa11.57□□□□□ -0.56
Spen-201ENSMUST00000078886 Ppargc1bQ8VHJ7 1014 aa11.55□□□□□ -0.56
Spen-201ENSMUST00000078886 Supt5hO55201 1082 aaKnown RBP11.54□□□□□ -0.56
Spen-201ENSMUST00000078886 NclP09405 707 aaKnown RBP11.51□□□□□ -0.57
Spen-201ENSMUST00000078886 Anp32aO35381 247 aa11.5□□□□□ -0.57
Spen-201ENSMUST00000078886 Neurod1Q60867 357 aa11.45□□□□□ -0.58
Spen-201ENSMUST00000078886 Fam50aQ9WV03 339 aaKnown RBP11.44□□□□□ -0.58
Spen-201ENSMUST00000078886 Lmod3E9QA62 571 aa11.42□□□□□ -0.58
Spen-201ENSMUST00000078886 TonslQ6NZL6 1363 aa11.41□□□□□ -0.58
Spen-201ENSMUST00000078886 Gm38655A0A286YDK6 273 aa11.39□□□□□ -0.59
Spen-201ENSMUST00000078886 Ap3b1Q9Z1T1 1105 aa11.34□□□□□ -0.59
Spen-201ENSMUST00000078886 ArxO35085 564 aa11.32□□□□□ -0.6
Spen-201ENSMUST00000078886 Il27Q8K3I6 234 aa11.31□□□□□ -0.6
Spen-201ENSMUST00000078886 Upf2A2AT37 1269 aaKnown RBP11.3□□□□□ -0.6
Spen-201ENSMUST00000078886 Os9Q8K2C7 672 aa11.3□□□□□ -0.6
Spen-201ENSMUST00000078886 Mier1Q5UAK0 511 aa11.28□□□□□ -0.6
Spen-201ENSMUST00000078886 ClspnQ80YR7 1315 aa11.26□□□□□ -0.61
Spen-201ENSMUST00000078886 Csrnp3P59055 597 aa11.21□□□□□ -0.61
Spen-201ENSMUST00000078886 Anks4bQ8K3X6 423 aa11.19□□□□□ -0.62
Spen-201ENSMUST00000078886 Ccdc9Q8VC31 543 aaKnown RBP11.17□□□□□ -0.62
Spen-201ENSMUST00000078886 Aplp2Q06335 707 aa11.15□□□□□ -0.62
Spen-201ENSMUST00000078886 Hsp90aa1P07901 733 aaKnown RBP11.12□□□□□ -0.63
Spen-201ENSMUST00000078886 Vsig10D3YX43 558 aa11.11□□□□□ -0.63
Spen-201ENSMUST00000078886 DekQ7TNV0 380 aaKnown RBP11.1□□□□□ -0.63
Spen-201ENSMUST00000078886 Polr3glQ8R0C0 218 aa11.08□□□□□ -0.64
Spen-201ENSMUST00000078886 Bcl11aQ9QYE3 773 aa11.05□□□□□ -0.64
Spen-201ENSMUST00000078886 Nlrp6Q91WS2 869 aa11.04□□□□□ -0.64
Spen-201ENSMUST00000078886 Trim44Q9QXA7 346 aa11.03□□□□□ -0.64
Spen-201ENSMUST00000078886 Ppp4r2Q0VGB7 417 aa11.03□□□□□ -0.64
Spen-201ENSMUST00000078886 Sall2Q9QX96 1004 aa11.03□□□□□ -0.64
Spen-201ENSMUST00000078886 Zcchc6Q5BLK4 1491 aaKnown RBP11.03□□□□□ -0.64
Spen-201ENSMUST00000078886 Calr4Q3TQS0 420 aa11.02□□□□□ -0.65
Spen-201ENSMUST00000078886 Mapk8ip2Q9ERE9 830 aa11.01□□□□□ -0.65
Spen-201ENSMUST00000078886 Plekhg3Q4VAC9 1341 aa10.98□□□□□ -0.65
Spen-201ENSMUST00000078886 Tnnt2P50752 301 aa10.96□□□□□ -0.66
Spen-201ENSMUST00000078886 Zbtb7cQ8VCZ7 619 aa10.96□□□□□ -0.66
Spen-201ENSMUST00000078886 Hnrnpul2Q00PI9 745 aaKnown RBP10.95□□□□□ -0.66
Spen-201ENSMUST00000078886 Chic1Q8CBW7 227 aa10.95□□□□□ -0.66
Spen-201ENSMUST00000078886 Zbtb4Q5F293 982 aa10.94□□□□□ -0.66
Spen-201ENSMUST00000078886 Znf316Q6PGE4 1016 aa10.94□□□□□ -0.66
Spen-201ENSMUST00000078886 Lmod2Q3UHZ5 550 aa10.93□□□□□ -0.66
Spen-201ENSMUST00000078886 Wdr43Q6ZQL4 677 aaKnown RBP10.91□□□□□ -0.66
Spen-201ENSMUST00000078886 Podxl2Q8CAE9 603 aa10.9□□□□□ -0.66
Spen-201ENSMUST00000078886 CanxP35564 591 aaKnown RBP10.9□□□□□ -0.66
Spen-201ENSMUST00000078886 Prdm10Q3UTQ7 1184 aa10.89□□□□□ -0.67
Spen-201ENSMUST00000078886 PtmaP26350 111 aa10.89□□□□□ -0.67
Spen-201ENSMUST00000078886 Eid3Q3V124 375 aa10.87□□□□□ -0.67
Spen-201ENSMUST00000078886 Irx3P81067 507 aa10.86□□□□□ -0.67
Spen-201ENSMUST00000078886 Erich6D3Z6S9 713 aa10.85□□□□□ -0.67
Spen-201ENSMUST00000078886 Dcaf1Q80TR8 1506 aa10.85□□□□□ -0.67
Spen-201ENSMUST00000078886 Fam71e1A1L3C1 212 aa10.85□□□□□ -0.67
Spen-201ENSMUST00000078886 Rangap1P46061 589 aaKnown RBP10.82□□□□□ -0.68
Spen-201ENSMUST00000078886 1700123L14RikQ3V2K7 440 aa10.82□□□□□ -0.68
Spen-201ENSMUST00000078886 Abcc9P70170 1546 aa10.82□□□□□ -0.68
Spen-201ENSMUST00000078886 Ccdc27Q3V036 639 aa10.82□□□□□ -0.68
Spen-201ENSMUST00000078886 Hdac5Q9Z2V6 1113 aa10.82□□□□□ -0.68
Spen-201ENSMUST00000078886 Hsp90ab1P11499 724 aaKnown RBP10.82□□□□□ -0.68
Spen-201ENSMUST00000078886 Ccer2J3QPU5 274 aa10.81□□□□□ -0.68
Retrieved 100 of 22,080 RNA–protein pairs in 44.5 ms