RNA–Protein interactions for RNA: ENSMUST00000002043.9

Ccdc47-201, Transcript of Coiled-coil domain-containing protein 47, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc47, Length 5,193 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc47-201ENSMUST00000002043 Rhox8Q6VSS7 320 aa15.82■□□□□ 0.12
Ccdc47-201ENSMUST00000002043 Rpgrip1Q9EPQ2 1331 aa15.14■□□□□ 0.01
Ccdc47-201ENSMUST00000002043 Cngb1E1AZ71 1325 aa14.72□□□□□ -0.05
Ccdc47-201ENSMUST00000002043 Las1lA2BE28 776 aaKnown RBP14.57□□□□□ -0.08
Ccdc47-201ENSMUST00000002043 Pelp1Q9DBD5 1123 aaKnown RBP14.43□□□□□ -0.1
Ccdc47-201ENSMUST00000002043 Wdr66E9Q743 1299 aa13.97□□□□□ -0.17
Ccdc47-201ENSMUST00000002043 Esf1Q3V1V3 845 aaKnown RBP13.97□□□□□ -0.17
Ccdc47-201ENSMUST00000002043 Trim41Q5NCC3 630 aa13.97□□□□□ -0.17
Ccdc47-201ENSMUST00000002043 Ube2uB1AUC4 352 aa13.88□□□□□ -0.19
Ccdc47-201ENSMUST00000002043 Ehmt2Q9Z148 1263 aaKnown RBP13.83□□□□□ -0.2
Ccdc47-201ENSMUST00000002043 Ccdc136Q3TVA9 1136 aa13.81□□□□□ -0.2
Ccdc47-201ENSMUST00000002043 Stra8P70278 393 aa13.8□□□□□ -0.2
Ccdc47-201ENSMUST00000002043 Zeb1Q64318 1117 aa13.75□□□□□ -0.21
Ccdc47-201ENSMUST00000002043 CenpbP27790 599 aa13.74□□□□□ -0.21
Ccdc47-201ENSMUST00000002043 NefmP08553 848 aa13.73□□□□□ -0.21
Ccdc47-201ENSMUST00000002043 Npm2Q80W85 207 aa13.73□□□□□ -0.21
Ccdc47-201ENSMUST00000002043 Gab3Q8BSM5 595 aa13.6□□□□□ -0.23
Ccdc47-201ENSMUST00000002043 Myt1Q8CFC2 1127 aa13.54□□□□□ -0.24
Ccdc47-201ENSMUST00000002043 Acin1Q9JIX8 1338 aaKnown RBP13.53□□□□□ -0.24
Ccdc47-201ENSMUST00000002043 Myt1lP97500 1187 aa13.47□□□□□ -0.25
Ccdc47-201ENSMUST00000002043 Amer1Q7TS75 1132 aa13.46□□□□□ -0.25
Ccdc47-201ENSMUST00000002043 4930567H17RikQ3V0K5 233 aa13.42□□□□□ -0.26
Ccdc47-201ENSMUST00000002043 HrcG5E8J6 738 aa13.38□□□□□ -0.27
Ccdc47-201ENSMUST00000002043 Anp32bQ9EST5 272 aaKnown RBP13.35□□□□□ -0.27
Ccdc47-201ENSMUST00000002043 NischQ80TM9 1593 aa13.34□□□□□ -0.27
Ccdc47-201ENSMUST00000002043 Tnnt3Q9QZ47 272 aa13.34□□□□□ -0.27
Ccdc47-201ENSMUST00000002043 Cdk11bP24788 784 aaKnown RBP13.25□□□□□ -0.29
Ccdc47-201ENSMUST00000002043 UbtfP25976 765 aaKnown RBP13.23□□□□□ -0.29
Ccdc47-201ENSMUST00000002043 NrdcQ8BHG1 1161 aa13.19□□□□□ -0.3
Ccdc47-201ENSMUST00000002043 Ccdc180J3QNE4 1664 aa13.18□□□□□ -0.3
Ccdc47-201ENSMUST00000002043 Rtl5Q5DTT4 599 aa13.16□□□□□ -0.3
Ccdc47-201ENSMUST00000002043 NeflP08551 543 aa13.15□□□□□ -0.3
Ccdc47-201ENSMUST00000002043 Slc24a1Q91WD8 1130 aa13.07□□□□□ -0.32
Ccdc47-201ENSMUST00000002043 4933416C03RikQ3V063 378 aa13.03□□□□□ -0.32
Ccdc47-201ENSMUST00000002043 Nop58Q6DFW4 536 aaKnown RBP13.02□□□□□ -0.33
Ccdc47-201ENSMUST00000002043 Rtl1Q7M732 1744 aa13□□□□□ -0.33
Ccdc47-201ENSMUST00000002043 NclP09405 707 aaKnown RBP12.96□□□□□ -0.33
Ccdc47-201ENSMUST00000002043 Pcgf6Q99NA9 353 aa12.93□□□□□ -0.34
Ccdc47-201ENSMUST00000002043 Fam50aQ9WV03 339 aaKnown RBP12.89□□□□□ -0.35
Ccdc47-201ENSMUST00000002043 Neurod1Q60867 357 aa12.88□□□□□ -0.35
Ccdc47-201ENSMUST00000002043 Il27Q8K3I6 234 aa12.87□□□□□ -0.35
Ccdc47-201ENSMUST00000002043 TonslQ6NZL6 1363 aa12.85□□□□□ -0.35
Ccdc47-201ENSMUST00000002043 Os9Q8K2C7 672 aa12.84□□□□□ -0.35
Ccdc47-201ENSMUST00000002043 Hdac5Q9Z2V6 1113 aa12.81□□□□□ -0.36
Ccdc47-201ENSMUST00000002043 Ttbk1Q6PCN3 1308 aa12.75□□□□□ -0.37
Ccdc47-201ENSMUST00000002043 Eif5bQ05D44 1216 aaKnown RBP12.71□□□□□ -0.37
Ccdc47-201ENSMUST00000002043 Anp32aO35381 247 aa12.68□□□□□ -0.38
Ccdc47-201ENSMUST00000002043 Zcchc6Q5BLK4 1491 aaKnown RBP12.67□□□□□ -0.38
Ccdc47-201ENSMUST00000002043 ClspnQ80YR7 1315 aa12.65□□□□□ -0.39
Ccdc47-201ENSMUST00000002043 Ccer2J3QPU5 274 aa12.61□□□□□ -0.39
Ccdc47-201ENSMUST00000002043 Ap3b1Q9Z1T1 1105 aa12.61□□□□□ -0.39
Ccdc47-201ENSMUST00000002043 Npm1Q61937 292 aaKnown RBP12.56□□□□□ -0.4
Ccdc47-201ENSMUST00000002043 Supt5hO55201 1082 aaKnown RBP12.55□□□□□ -0.4
Ccdc47-201ENSMUST00000002043 Mier1Q5UAK0 511 aa12.55□□□□□ -0.4
Ccdc47-201ENSMUST00000002043 Upf2A2AT37 1269 aaKnown RBP12.54□□□□□ -0.4
Ccdc47-201ENSMUST00000002043 DaxxO35613 739 aa12.49□□□□□ -0.41
Ccdc47-201ENSMUST00000002043 Ccdc9Q8VC31 543 aaKnown RBP12.48□□□□□ -0.41
Ccdc47-201ENSMUST00000002043 Nlrp6Q91WS2 869 aa12.44□□□□□ -0.42
Ccdc47-201ENSMUST00000002043 DiexfQ8BTT6 772 aaKnown RBP12.42□□□□□ -0.42
Ccdc47-201ENSMUST00000002043 Gm13697A2AK42 830 aa12.41□□□□□ -0.42
Ccdc47-201ENSMUST00000002043 Hnrnpul2Q00PI9 745 aaKnown RBP12.4□□□□□ -0.42
Ccdc47-201ENSMUST00000002043 Anks4bQ8K3X6 423 aa12.37□□□□□ -0.43
Ccdc47-201ENSMUST00000002043 Aplp2Q06335 707 aa12.36□□□□□ -0.43
Ccdc47-201ENSMUST00000002043 Lmod2Q3UHZ5 550 aa12.34□□□□□ -0.43
Ccdc47-201ENSMUST00000002043 Clstn2Q9ER65 966 aa12.33□□□□□ -0.44
Ccdc47-201ENSMUST00000002043 Abcc9P70170 1546 aa12.32□□□□□ -0.44
Ccdc47-201ENSMUST00000002043 Ppargc1bQ8VHJ7 1014 aa12.32□□□□□ -0.44
Ccdc47-201ENSMUST00000002043 Brd4Q9ESU6 1400 aaKnown RBP12.31□□□□□ -0.44
Ccdc47-201ENSMUST00000002043 Plekhg3Q4VAC9 1341 aa12.29□□□□□ -0.44
Ccdc47-201ENSMUST00000002043 Clip1Q922J3 1391 aa12.27□□□□□ -0.44
Ccdc47-201ENSMUST00000002043 Dcaf1Q80TR8 1506 aa12.25□□□□□ -0.45
Ccdc47-201ENSMUST00000002043 Cep164Q5DU05 1446 aa12.24□□□□□ -0.45
Ccdc47-201ENSMUST00000002043 Atp1b4Q99ME6 356 aa12.24□□□□□ -0.45
Ccdc47-201ENSMUST00000002043 Gm13695A2AK44 830 aa12.22□□□□□ -0.45
Ccdc47-201ENSMUST00000002043 Zbtb7cQ8VCZ7 619 aa12.22□□□□□ -0.45
Ccdc47-201ENSMUST00000002043 Calr4Q3TQS0 420 aa12.22□□□□□ -0.45
Ccdc47-201ENSMUST00000002043 Erich6D3Z6S9 713 aa12.21□□□□□ -0.45
Ccdc47-201ENSMUST00000002043 Polr3glQ8R0C0 218 aa12.2□□□□□ -0.46
Ccdc47-201ENSMUST00000002043 Ythdc1E9Q5K9 736 aaKnown RBP12.2□□□□□ -0.46
Ccdc47-201ENSMUST00000002043 Hsp90aa1P07901 733 aaKnown RBP12.19□□□□□ -0.46
Ccdc47-201ENSMUST00000002043 Wdr43Q6ZQL4 677 aaKnown RBP12.17□□□□□ -0.46
Ccdc47-201ENSMUST00000002043 CatipB9EKE5 520 aa12.16□□□□□ -0.46
Ccdc47-201ENSMUST00000002043 Zfp777B9EKF4 885 aa12.13□□□□□ -0.47
Ccdc47-201ENSMUST00000002043 Sall2Q9QX96 1004 aa12.11□□□□□ -0.47
Ccdc47-201ENSMUST00000002043 Ppp4r2Q0VGB7 417 aa12.1□□□□□ -0.47
Ccdc47-201ENSMUST00000002043 Trim44Q9QXA7 346 aa12.09□□□□□ -0.47
Ccdc47-201ENSMUST00000002043 Chic1Q8CBW7 227 aa12.08□□□□□ -0.47
Ccdc47-201ENSMUST00000002043 Eid3Q3V124 375 aa12.08□□□□□ -0.48
Ccdc47-201ENSMUST00000002043 Mrs2Q5NCE8 434 aa12.08□□□□□ -0.48
Ccdc47-201ENSMUST00000002043 Chmp4bQ9D8B3 224 aaKnown RBP12.08□□□□□ -0.48
Ccdc47-201ENSMUST00000002043 Gm35339A0A140LHH9 1649 aa12.07□□□□□ -0.48
Ccdc47-201ENSMUST00000002043 Htatsf1Q8BGC0 757 aa12.06□□□□□ -0.48
Ccdc47-201ENSMUST00000002043 Fgd1P52734 960 aa12.05□□□□□ -0.48
Ccdc47-201ENSMUST00000002043 Zbtb4Q5F293 982 aa12.05□□□□□ -0.48
Ccdc47-201ENSMUST00000002043 Cwc22Q8C5N3 908 aaKnown RBP12□□□□□ -0.49
Ccdc47-201ENSMUST00000002043 Ifnlr1Q8CGK5 535 aa11.99□□□□□ -0.49
Ccdc47-201ENSMUST00000002043 Abcc8B2RUS7 1588 aa11.99□□□□□ -0.49
Ccdc47-201ENSMUST00000002043 BlmO88700 1416 aa11.99□□□□□ -0.49
Ccdc47-201ENSMUST00000002043 Ppm1gQ61074 542 aa11.98□□□□□ -0.49
Ccdc47-201ENSMUST00000002043 ArxO35085 564 aa11.97□□□□□ -0.49
Retrieved 100 of 22,080 RNA–protein pairs in 8.9 ms