RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	YGR161W-C	Q3E744	92 aa		5.51	□□□□□ -1.53
SEC39	YLR440C	LEU1	P07264	779 aa	Known RBP	5.51	□□□□□ -1.53
SEC39	YLR440C	MCM3	P24279	971 aa	Known RBP	5.51	□□□□□ -1.53
SEC39	YLR440C	URA1	P28272	314 aa	Predicted RBP	5.51	□□□□□ -1.53
SEC39	YLR440C	PSE1	P32337	1089 aa	Known RBP	5.51	□□□□□ -1.53
SEC39	YLR440C	YEL1	P34225	687 aa		5.51	□□□□□ -1.53
SEC39	YLR440C	SSZ1	P38788	538 aa	Known RBP	5.51	□□□□□ -1.53
SEC39	YLR440C	SIT1	P39980	628 aa		5.51	□□□□□ -1.53
SEC39	YLR440C	FMP10	P40098	244 aa		5.51	□□□□□ -1.53
SEC39	YLR440C	APL6	P46682	809 aa		5.51	□□□□□ -1.53
SEC39	YLR440C	GIC2	Q06648	383 aa		5.51	□□□□□ -1.53
SEC39	YLR440C	YDL073W	Q07454	984 aa		5.51	□□□□□ -1.53
SEC39	YLR440C	RIO1	Q12196	484 aa	Known RBP	5.51	□□□□□ -1.53
SEC39	YLR440C	SLP1	Q12232	587 aa		5.51	□□□□□ -1.53
SEC39	YLR440C	CDC60	P26637	1090 aa	Known RBP	5.5	□□□□□ -1.53
SEC39	YLR440C	ELM1	P32801	640 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	APL2	P36000	726 aa	Predicted RBP	5.5	□□□□□ -1.53
SEC39	YLR440C	SLX1	P38324	304 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	HSM3	P38348	480 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	GGA2	P38817	585 aa	Known RBP	5.5	□□□□□ -1.53
SEC39	YLR440C	GTT3	P39996	337 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	YIR042C	P40586	236 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	VTC2	P43585	828 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	SDA1	P53313	767 aa	Known RBP	5.5	□□□□□ -1.53
SEC39	YLR440C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.5	□□□□□ -1.53	RIP-Chip
SEC39	YLR440C	MDM36	Q06820	579 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	RAD16	P31244	790 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	ERC1	P38767	581 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	ALG2	P43636	503 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	YJR142W	P47173	342 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	IST1	P53843	298 aa	Predicted RBP	5.5	□□□□□ -1.53
SEC39	YLR440C	ADA2	Q02336	434 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	ERO1	Q03103	563 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	MSB4	Q12317	492 aa		5.5	□□□□□ -1.53
SEC39	YLR440C	DIT1	P21623	536 aa		5.49	□□□□□ -1.53
SEC39	YLR440C	YDJ1	P25491	409 aa	Known RBP	5.49	□□□□□ -1.53
SEC39	YLR440C	PTR2	P32901	601 aa		5.49	□□□□□ -1.53
SEC39	YLR440C	SMY2	P32909	740 aa	Known RBP	5.49	□□□□□ -1.53
SEC39	YLR440C	MRPL40	P36534	297 aa		5.49	□□□□□ -1.53
SEC39	YLR440C	TMN3	P40071	706 aa		5.49	□□□□□ -1.53
SEC39	YLR440C	FUS2	Q05670	677 aa		5.49	□□□□□ -1.53
SEC39	YLR440C	ADE13	Q05911	482 aa	Known RBP	5.49	□□□□□ -1.53
SEC39	YLR440C	UTP13	Q05946	817 aa	Known RBP	5.49	□□□□□ -1.53
SEC39	YLR440C	ESF1	Q06344	628 aa	Known RBP	5.49	□□□□□ -1.53
SEC39	YLR440C	PEX19	Q07418	342 aa		5.49	□□□□□ -1.53
SEC39	YLR440C	NOB1	Q08444	459 aa	Known RBP	5.49	□□□□□ -1.53
SEC39	YLR440C	SUI2	P20459	304 aa	Known RBP	5.48	□□□□□ -1.53
SEC39	YLR440C	BUD31	P25337	157 aa	Predicted RBP	5.48	□□□□□ -1.53
SEC39	YLR440C	YKL091C	P33324	310 aa	Known RBP	5.48	□□□□□ -1.53
SEC39	YLR440C	PEX6	P33760	1030 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	MTC2	P34246	357 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	YHR020W	P38708	688 aa	Known RBP	5.48	□□□□□ -1.53
SEC39	YLR440C	SPC72	P39723	622 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	BUD6	P41697	788 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	DAK2	P43550	591 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	SAP155	P43612	1002 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	5.48	□□□□□ -1.53	not detected
SEC39	YLR440C	KIP2	P28743	706 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	ECM32	P32644	1121 aa	Known RBP	5.48	□□□□□ -1.53
SEC39	YLR440C	YKL050C	P35736	922 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	RTG3	P38165	486 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	ATG1	P53104	897 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	DCP2	P53550	970 aa	Known RBP	5.48	□□□□□ -1.53
SEC39	YLR440C	ECM11	Q04110	302 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	SPO20	Q04359	397 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	5.48	□□□□□ -1.53	not detected
SEC39	YLR440C	YPL277C	Q08989	487 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	MCD1	Q12158	566 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	HAT1	Q12341	374 aa		5.48	□□□□□ -1.53
SEC39	YLR440C	RRP5	Q05022	1729 aa	Known RBP	5.48	□□□□□ -1.53
SEC39	YLR440C	RAD50	P12753	1312 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	PDI1	P17967	522 aa	Known RBP	5.47	□□□□□ -1.53
SEC39	YLR440C	CLB1	P24868	471 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	PRP45	P28004	379 aa	Predicted RBP	5.47	□□□□□ -1.53
SEC39	YLR440C	PAP1	P29468	568 aa	Known RBP	5.47	□□□□□ -1.53
SEC39	YLR440C	GLC3	P32775	704 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	SLA1	P32790	1244 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	RIM101	P33400	625 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	SWH1	P35845	1188 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	UIP5	P36137	443 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	TAF5	P38129	798 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	STN1	P38960	494 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	ILV3	P39522	585 aa	Known RBP	5.47	□□□□□ -1.53
SEC39	YLR440C	ATG32	P40458	529 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	LSC1	P53598	329 aa	Known RBP	5.47	□□□□□ -1.53
SEC39	YLR440C	SPC19	Q03954	165 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	YMR018W	Q04364	514 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	YDR286C	Q05530	114 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	MAG2	Q06436	670 aa	Known RBP	5.47	□□□□□ -1.53
SEC39	YLR440C	ALR1	Q08269	859 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	YOR378W	Q08902	515 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	MIA40	P36046	403 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	MIC60	P36112	540 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	POP2	P39008	433 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	MPH1	P40562	993 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	RET2	P43621	546 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	VPS70	P47161	811 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	PEX14	P53112	341 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	SPO1	P53541	631 aa		5.47	□□□□□ -1.53
SEC39	YLR440C	HST1	P53685	503 aa		5.47	□□□□□ -1.53

Retrieved 100 of 5,963 RNA–protein pairs in 6.9 ms