RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB5	YLR260W	MAD1	P40957	749 aa		4.27	□□□□□ -1.73
LCB5	YLR260W	ATG1	P53104	897 aa		4.27	□□□□□ -1.73
LCB5	YLR260W	BDF2	Q07442	638 aa		4.27	□□□□□ -1.73
LCB5	YLR260W	ERP4	Q12450	207 aa		4.27	□□□□□ -1.73
LCB5	YLR260W	LPD1	P09624	499 aa	Known RBP	4.26	□□□□□ -1.73
LCB5	YLR260W	KIP2	P28743	706 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	RPN12	P32496	274 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	IXR1	P33417	597 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	SOH1	P38633	127 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	GLO3	P38682	493 aa	Known RBP	4.26	□□□□□ -1.73
LCB5	YLR260W	FOL1	P53848	824 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	UTP13	Q05946	817 aa	Known RBP	4.26	□□□□□ -1.73
LCB5	YLR260W	THI22	Q06490	572 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	YOR131C	Q12486	218 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	FRT1	Q99332	602 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	FIG2	P25653	1609 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	COQ4	O13525	335 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	PRD1	P25375	712 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	PFF1	P38244	976 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	YNL050C	P53952	270 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	SYH1	Q02875	849 aa	Known RBP	4.26	□□□□□ -1.73
LCB5	YLR260W	NUT2	Q06213	157 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	NHA1	Q99271	985 aa		4.26	□□□□□ -1.73
LCB5	YLR260W	ICL1	P28240	557 aa	Predicted RBP	4.25	□□□□□ -1.73
LCB5	YLR260W	RTR1	P40084	226 aa	Predicted RBP	4.25	□□□□□ -1.73
LCB5	YLR260W	MSH4	P40965	878 aa	Predicted RBP	4.25	□□□□□ -1.73
LCB5	YLR260W	MTO1	P53070	669 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	RTT109	Q07794	436 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	TAF13	P11747	167 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	GAL2	P13181	574 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	AMS1	P22855	1083 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	UGA3	P26370	528 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	YBR287W	P38355	427 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	HAL5	P38970	855 aa	Known RBP	4.25	□□□□□ -1.73
LCB5	YLR260W	BOL3	P39724	118 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	RRT14	P40470	206 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	MEH1	Q02205	184 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	UBP16	Q02863	499 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	ERO1	Q03103	563 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	UTP14	Q04500	899 aa	Known RBP	4.25	□□□□□ -1.73
LCB5	YLR260W	SPR28	Q04921	423 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	SSP2	Q08646	371 aa		4.25	□□□□□ -1.73
LCB5	YLR260W	BLI1	P35727	113 aa		4.24	□□□□□ -1.73
LCB5	YLR260W	BOI1	P38041	980 aa	Known RBP	4.24	□□□□□ -1.73
LCB5	YLR260W	EMW1	P42842	904 aa	Known RBP	4.24	□□□□□ -1.73
LCB5	YLR260W	ISR1	Q06098	443 aa	Known RBP	4.24	□□□□□ -1.73
LCB5	YLR260W	PSH1	Q12161	406 aa		4.24	□□□□□ -1.73
LCB5	YLR260W	RAD27	P26793	382 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	MCM2	P29469	868 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	NUP82	P40368	713 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	DAK2	P43550	591 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	RAT1	Q02792	1006 aa	Known RBP	4.23	□□□□□ -1.73
LCB5	YLR260W	VPS64	Q03944	604 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	ATG20	Q07528	640 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	PSK2	Q08217	1101 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	BMS1	Q08965	1183 aa	Known RBP	4.23	□□□□□ -1.73
LCB5	YLR260W	SNU66	Q12420	587 aa	Predicted RBP	4.23	□□□□□ -1.73
LCB5	YLR260W	LYS2	P07702	1392 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	OPI1	P21957	404 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	MAL31	P38156	614 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	CRP1	P38845	465 aa	Known RBP	4.23	□□□□□ -1.73
LCB5	YLR260W	PEX8	P53248	589 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	HEF3	P53978	1044 aa	Known RBP	4.23	□□□□□ -1.73
LCB5	YLR260W	FCP1	Q03254	732 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	MTC5	Q03897	1148 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	YOR378W	Q08902	515 aa		4.23	□□□□□ -1.73
LCB5	YLR260W	MIP1	P15801	1254 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	PHO87	P25360	923 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	DPB3	P27344	201 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	TAT2	P38967	592 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	HOS4	P40480	1083 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	HUL5	P53119	910 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	PNP1	Q05788	311 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	SWI1	P09547	1314 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	YLR278C	Q05854	1341 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	DUR1,2	P32528	1835 aa	Known RBP	4.22	□□□□□ -1.73
LCB5	YLR260W	CLN2	P20438	545 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	SRM1	P21827	482 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	FRD1	P32614	470 aa	Known RBP	4.22	□□□□□ -1.73
LCB5	YLR260W	MRT4	P33201	236 aa	Known RBP	4.22	□□□□□ -1.73
LCB5	YLR260W	QDR1	P40475	563 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	CLA4	P48562	842 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	ACS2	P52910	683 aa	Known RBP	4.22	□□□□□ -1.73
LCB5	YLR260W	SRC1	Q03707	834 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	ATG16	Q03818	150 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	HED1	Q03937	162 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	SPO20	Q04359	397 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	PUF6	Q04373	656 aa	Known RBP	4.22	□□□□□ -1.73
LCB5	YLR260W	ESF1	Q06344	628 aa	Known RBP	4.22	□□□□□ -1.73
LCB5	YLR260W	IRC3	Q06683	689 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	PPM2	Q08282	695 aa		4.22	□□□□□ -1.73
LCB5	YLR260W	RAS1	P01119	309 aa		4.21	□□□□□ -1.74
LCB5	YLR260W	RET1	P22276	1149 aa	Known RBP	4.21	□□□□□ -1.74
LCB5	YLR260W	MRC1	P25588	1096 aa		4.21	□□□□□ -1.74
LCB5	YLR260W	TIM23	P32897	222 aa		4.21	□□□□□ -1.74
LCB5	YLR260W	YGR021W	P53212	290 aa		4.21	□□□□□ -1.74
LCB5	YLR260W	VMS1	Q04311	632 aa	Known RBP	4.21	□□□□□ -1.74
LCB5	YLR260W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
LCB5	YLR260W	SSK22	P25390	1331 aa	Predicted RBP	4.2	□□□□□ -1.74
LCB5	YLR260W	CDC11	P32458	415 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 9.5 ms