RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W NEM1P38757 446 aa5.34□□□□□ -1.55
UPF3YGR072W AIM26P32858 118 aa5.33□□□□□ -1.56
UPF3YGR072W YAR028WP39548 234 aa5.33□□□□□ -1.56
UPF3YGR072W YPT53P36019 220 aa5.32□□□□□ -1.56
UPF3YGR072W SHU2P38957 223 aa5.32□□□□□ -1.56
UPF3YGR072W TAT2P38967 592 aa5.32□□□□□ -1.56
UPF3YGR072W YDR132CQ03900 495 aa5.32□□□□□ -1.56
UPF3YGR072W GPI13Q07830 1017 aa5.32□□□□□ -1.56
UPF3YGR072W NOC3Q07896 663 aaPredicted RBP5.32□□□□□ -1.56
UPF3YGR072W FRT1Q99332 602 aa5.32□□□□□ -1.56
UPF3YGR072W GEF1P37020 779 aa5.31□□□□□ -1.56
UPF3YGR072W MPT5P39016 859 aaKnown RBP RIP-Chip data5.31□□□□□ -1.56not detected
UPF3YGR072W MDJ2P42834 146 aa5.31□□□□□ -1.56
UPF3YGR072W ERP5P38819 212 aa5.3□□□□□ -1.56
UPF3YGR072W MTR4P47047 1073 aaKnown RBP5.29□□□□□ -1.56
UPF3YGR072W SPT20P50875 604 aa5.29□□□□□ -1.56
UPF3YGR072W NOG1Q02892 647 aaKnown RBP5.29□□□□□ -1.56
UPF3YGR072W RSA3Q05942 220 aaKnown RBP5.29□□□□□ -1.56
UPF3YGR072W NUT2Q06213 157 aa5.29□□□□□ -1.56
UPF3YGR072W YBL113CQ7M4S9 792 aa5.29□□□□□ -1.56
UPF3YGR072W SAM37P50110 327 aa5.28□□□□□ -1.56
UPF3YGR072W UBP3Q01477 912 aaKnown RBP RIP-Chip data5.28□□□□□ -1.56not detected
UPF3YGR072W YCS4Q06156 1176 aa5.28□□□□□ -1.56
UPF3YGR072W SRO9P25567 434 aaKnown RBP5.27□□□□□ -1.57
UPF3YGR072W CDC3P32457 520 aaKnown RBP5.27□□□□□ -1.57
UPF3YGR072W CIC1P38779 376 aaKnown RBP5.27□□□□□ -1.57
UPF3YGR072W UTP5Q04177 643 aaKnown RBP5.27□□□□□ -1.57
UPF3YGR072W HRK1Q08732 759 aaKnown RBP5.27□□□□□ -1.57
UPF3YGR072W HSE1P38753 452 aa5.26□□□□□ -1.57
UPF3YGR072W MEF2P39677 819 aa5.26□□□□□ -1.57
UPF3YGR072W YJL045WP47052 634 aa5.26□□□□□ -1.57
UPF3YGR072W SGD1Q06132 899 aa5.26□□□□□ -1.57
UPF3YGR072W PUS9Q12069 462 aa5.26□□□□□ -1.57
UPF3YGR072W MSH3P25336 1018 aa5.25□□□□□ -1.57
UPF3YGR072W LAM1P38851 1228 aa5.25□□□□□ -1.57
UPF3YGR072W XKS1P42826 600 aa5.25□□□□□ -1.57
UPF3YGR072W SLI1P53304 468 aa5.25□□□□□ -1.57
UPF3YGR072W GCN5Q03330 439 aa5.25□□□□□ -1.57
UPF3YGR072W RSC58Q07979 502 aa5.25□□□□□ -1.57
UPF3YGR072W SPS1P08458 490 aa5.24□□□□□ -1.57
UPF3YGR072W TRM2P33753 639 aa5.24□□□□□ -1.57
UPF3YGR072W YOR352WQ08816 343 aa5.24□□□□□ -1.57
UPF3YGR072W LAP2Q10740 671 aa5.24□□□□□ -1.57
UPF3YGR072W YNR063WP53749 607 aa5.23□□□□□ -1.57
UPF3YGR072W PEX13P80667 386 aa5.23□□□□□ -1.57
UPF3YGR072W YML020WQ03722 664 aa5.22□□□□□ -1.57
UPF3YGR072W HAT1Q12341 374 aa5.22□□□□□ -1.57
UPF3YGR072W VMA4P22203 233 aaKnown RBP5.21□□□□□ -1.58
UPF3YGR072W UGA4P32837 571 aa5.21□□□□□ -1.58
UPF3YGR072W PRP40P33203 583 aaKnown RBP5.21□□□□□ -1.58
UPF3YGR072W ATG14P38270 344 aa5.21□□□□□ -1.58
UPF3YGR072W QNS1P38795 714 aaKnown RBP5.21□□□□□ -1.58
UPF3YGR072W RSM26P47141 266 aa5.21□□□□□ -1.58
UPF3YGR072W MSE1P48525 536 aa5.21□□□□□ -1.58
UPF3YGR072W RCL1Q08096 367 aaPredicted RBP5.21□□□□□ -1.58
UPF3YGR072W CYC1P00044 109 aaPredicted RBP5.2□□□□□ -1.58
UPF3YGR072W YSC84P32793 468 aa5.2□□□□□ -1.58
UPF3YGR072W ENV11P53246 860 aa5.2□□□□□ -1.58
UPF3YGR072W ROT1Q03691 256 aa5.2□□□□□ -1.58
UPF3YGR072W SCP160P06105 1222 aaKnown RBP RIP-Chip data5.19□□□□□ -1.58not detected
UPF3YGR072W SLD2P34252 453 aa5.19□□□□□ -1.58
UPF3YGR072W ULP1Q02724 621 aa5.19□□□□□ -1.58
UPF3YGR072W PLB2Q03674 706 aa5.19□□□□□ -1.58
UPF3YGR072W NBA1Q08229 501 aaKnown RBP5.19□□□□□ -1.58
UPF3YGR072W SQT1P35184 431 aa5.18□□□□□ -1.58
UPF3YGR072W SUN4P53616 420 aa5.18□□□□□ -1.58
UPF3YGR072W DUS4Q06063 367 aa5.18□□□□□ -1.58
UPF3YGR072W KAR2P16474 682 aaKnown RBP5.17□□□□□ -1.58
UPF3YGR072W GCD6P32501 712 aaKnown RBP5.17□□□□□ -1.58
UPF3YGR072W VPS35P34110 944 aa5.17□□□□□ -1.58
UPF3YGR072W RDH54P38086 958 aa5.17□□□□□ -1.58
UPF3YGR072W PEX28P38848 579 aa5.17□□□□□ -1.58
UPF3YGR072W RKM2Q03942 479 aa5.17□□□□□ -1.58
UPF3YGR072W DAL4Q04895 635 aa5.17□□□□□ -1.58
UPF3YGR072W NOP8Q08287 484 aaPredicted RBP5.17□□□□□ -1.58
UPF3YGR072W PHO4P07270 312 aaKnown RBP5.16□□□□□ -1.58
UPF3YGR072W PUF4P25339 888 aaKnown RBP RIP-Chip data5.16□□□□□ -1.58not detected
UPF3YGR072W HCM1P25364 564 aa5.16□□□□□ -1.58
UPF3YGR072W ADD66P36040 267 aa5.16□□□□□ -1.58
UPF3YGR072W YHL050CP38721 697 aa5.16□□□□□ -1.58
UPF3YGR072W YHR219WP38900 624 aa5.16□□□□□ -1.58
UPF3YGR072W VPS53P47061 822 aa5.16□□□□□ -1.58
UPF3YGR072W HNT2P49775 206 aa5.16□□□□□ -1.58
UPF3YGR072W DOM34P33309 386 aa5.15□□□□□ -1.59
UPF3YGR072W YML122CQ03207 126 aa5.15□□□□□ -1.59
UPF3YGR072W SPO21Q12411 609 aa5.15□□□□□ -1.59
UPF3YGR072W SEC26P41810 973 aaKnown RBP5.14□□□□□ -1.59
UPF3YGR072W YGL140CP53120 1219 aa5.14□□□□□ -1.59
UPF3YGR072W COQ4O13525 335 aa5.13□□□□□ -1.59
UPF3YGR072W HEM13P11353 328 aaKnown RBP5.13□□□□□ -1.59
UPF3YGR072W LST4P34239 828 aa5.13□□□□□ -1.59
UPF3YGR072W TMA10Q06177 86 aa5.13□□□□□ -1.59
UPF3YGR072W TOS4Q06266 489 aa5.13□□□□□ -1.59
UPF3YGR072W CDC20P26309 610 aa5.12□□□□□ -1.59
UPF3YGR072W KIP1P28742 1111 aa5.12□□□□□ -1.59
UPF3YGR072W CCZ1P38273 704 aa5.12□□□□□ -1.59
UPF3YGR072W DAK2P43550 591 aa5.12□□□□□ -1.59
UPF3YGR072W MCM6P53091 1017 aaKnown RBP5.12□□□□□ -1.59
UPF3YGR072W EST2Q06163 884 aa5.12□□□□□ -1.59
UPF3YGR072W NTO1Q12311 748 aa5.12□□□□□ -1.59
Retrieved 100 of 5,963 RNA–protein pairs in 100.1 ms