RNA–Protein interactions for RNA: YDL122W

UBP1, Transcript of Ubiquitin-specific protease, yeast

Gene UBP1, Length 2,430 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP1	YDL122W	MET13	P53128	600 aa		2.89	□□□□□ -1.95
UBP1	YDL122W	TOM1	Q03280	3268 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	PDC1	P06169	563 aa	Known RBP	2.88	□□□□□ -1.95
UBP1	YDL122W	SWI6	P09959	803 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	ARG8	P18544	423 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	RPS7A	P26786	190 aa	Known RBP	2.88	□□□□□ -1.95
UBP1	YDL122W	PDR3	P33200	976 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	GPT2	P36148	743 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	RPA14	P50106	137 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	ALE1	Q08548	619 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	MET32	Q12041	191 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	PUS1	Q12211	544 aa	Known RBP	2.88	□□□□□ -1.95
UBP1	YDL122W	URK1	P27515	501 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	POT1	P27796	417 aa	Known RBP RIP-Chip data	2.88	□□□□□ -1.95	not detected
UBP1	YDL122W	KTR2	P33550	425 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	HAL5	P38970	855 aa	Known RBP	2.88	□□□□□ -1.95
UBP1	YDL122W	GPB2	P39717	880 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	YGR035C	P53222	116 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	ENV11	P53246	860 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	RPT4	P53549	437 aa	Known RBP	2.88	□□□□□ -1.95
UBP1	YDL122W	YPR097W	Q06839	1073 aa		2.88	□□□□□ -1.95
UBP1	YDL122W	PMA1	P05030	918 aa	Known RBP	2.87	□□□□□ -1.95
UBP1	YDL122W	PPZ1	P26570	692 aa		2.87	□□□□□ -1.95
UBP1	YDL122W	ARP1	P38696	384 aa		2.87	□□□□□ -1.95
UBP1	YDL122W	BIM1	P40013	344 aa		2.87	□□□□□ -1.95
UBP1	YDL122W	FAA4	P47912	694 aa	Known RBP	2.87	□□□□□ -1.95
UBP1	YDL122W	HCR1	Q05775	265 aa	Known RBP	2.87	□□□□□ -1.95
UBP1	YDL122W	ALR1	Q08269	859 aa		2.87	□□□□□ -1.95
UBP1	YDL122W	UGA3	P26370	528 aa		2.87	□□□□□ -1.95
UBP1	YDL122W	CSN12	P47130	423 aa		2.87	□□□□□ -1.95
UBP1	YDL122W	KIP3	P53086	805 aa	Known RBP	2.87	□□□□□ -1.95
UBP1	YDL122W	HST3	P53687	447 aa		2.87	□□□□□ -1.95
UBP1	YDL122W	ORC1	P54784	914 aa	Predicted RBP	2.87	□□□□□ -1.95
UBP1	YDL122W	SYH1	Q02875	849 aa	Known RBP	2.87	□□□□□ -1.95
UBP1	YDL122W	GYL1	Q04322	720 aa		2.87	□□□□□ -1.95
UBP1	YDL122W	WRS1	Q12109	432 aa	Known RBP	2.87	□□□□□ -1.95
UBP1	YDL122W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	2.86	□□□□□ -1.95	RIP-Chip
UBP1	YDL122W	TOM71	P38825	639 aa	Known RBP	2.86	□□□□□ -1.95
UBP1	YDL122W	NOC2	P39744	710 aa	Known RBP	2.86	□□□□□ -1.95
UBP1	YDL122W	FMP10	P40098	244 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	YTA12	P40341	825 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	JJJ2	P46997	583 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	PTK2	P47116	818 aa	Known RBP	2.86	□□□□□ -1.95
UBP1	YDL122W	CAF120	P53836	1060 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	TBF1	Q02457	562 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	SPO71	Q03868	1245 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	MMR1	Q06324	491 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	MMP1	Q12372	583 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	RTP1	Q12751	981 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	SWI1	P09547	1314 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	ECM29	P38737	1868 aa		2.86	□□□□□ -1.95
UBP1	YDL122W	ATG32	P40458	529 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	RPL34B	P40525	121 aa	Known RBP	2.85	□□□□□ -1.95
UBP1	YDL122W	SPO74	P45819	413 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	YJL045W	P47052	634 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	SNU71	P53207	620 aa	Known RBP	2.85	□□□□□ -1.95
UBP1	YDL122W	YPR084W	Q06821	456 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	YDL206W	Q12424	762 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	GCN1	P33892	2672 aa	Known RBP	2.85	□□□□□ -1.95
UBP1	YDL122W	TRM1	P15565	570 aa	Known RBP	2.85	□□□□□ -1.95
UBP1	YDL122W	VMA2	P16140	517 aa	Known RBP	2.85	□□□□□ -1.95
UBP1	YDL122W	BET2	P20133	325 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	SLD2	P34252	453 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	STB5	P38699	743 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	YER158C	P40095	573 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	SKP2	P42843	763 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	PIN2	Q12057	282 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	LAM4	P38800	1345 aa		2.85	□□□□□ -1.95
UBP1	YDL122W	CDC19	P00549	500 aa	Known RBP	2.84	□□□□□ -1.95
UBP1	YDL122W	SNA3	P14359	133 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	SCJ1	P25303	377 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	ADP1	P25371	1049 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	PUP3	P25451	205 aa	Known RBP	2.84	□□□□□ -1.95
UBP1	YDL122W	YUR1	P26725	428 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	NMD3	P38861	518 aa	Known RBP	2.84	□□□□□ -1.95
UBP1	YDL122W	VPS53	P47061	822 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	INP52	P50942	1183 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	2.84	□□□□□ -1.95	not detected
UBP1	YDL122W	LCD1	Q04377	747 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	SPL2	P38839	148 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	ACO2	P39533	789 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	NUG1	P40010	520 aa	Known RBP	2.84	□□□□□ -1.95
UBP1	YDL122W	IOC3	P43596	787 aa		2.84	□□□□□ -1.95
UBP1	YDL122W	DAK1	P54838	584 aa	Known RBP	2.84	□□□□□ -1.95
UBP1	YDL122W	RPL34A	P87262	121 aa	Predicted RBP	2.84	□□□□□ -1.95
UBP1	YDL122W	MLP1	Q02455	1875 aa	Known RBP	2.84	□□□□□ -1.95
UBP1	YDL122W	MRT4	P33201	236 aa	Known RBP	2.83	□□□□□ -1.96
UBP1	YDL122W	CIT3	P43635	486 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	YJR115W	P47152	169 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	YML053C	Q04978	212 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	YPR204W	Q08995	1032 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	SAC3	P46674	1301 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	SEN1	Q00416	2231 aa	Known RBP	2.83	□□□□□ -1.96
UBP1	YDL122W	MBR1	P23493	339 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	APL2	P36000	726 aa	Predicted RBP	2.83	□□□□□ -1.96
UBP1	YDL122W	FMO1	P38866	432 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	FUN12	P39730	1002 aa	Known RBP	2.83	□□□□□ -1.96
UBP1	YDL122W	MSH4	P40965	878 aa	Predicted RBP	2.83	□□□□□ -1.96
UBP1	YDL122W	YGR130C	P53278	816 aa		2.83	□□□□□ -1.96
UBP1	YDL122W	NSE3	Q05541	303 aa		2.83	□□□□□ -1.96

Retrieved 100 of 5,963 RNA–protein pairs in 56.2 ms