RNA–Protein interactions for RNA: YDL088C

ASM4, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene ASM4, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASM4	YDL088C	UTP5	Q04177	643 aa	Known RBP	5.06	□□□□□ -1.6
ASM4	YDL088C	YLR257W	Q06146	321 aa	Known RBP	5.06	□□□□□ -1.6
ASM4	YDL088C	PUS7	Q08647	676 aa	Known RBP	5.06	□□□□□ -1.6
ASM4	YDL088C	RET1	P22276	1149 aa	Known RBP	5.05	□□□□□ -1.6
ASM4	YDL088C	PTC7	P38797	343 aa		5.05	□□□□□ -1.6
ASM4	YDL088C	PEX28	P38848	579 aa		5.05	□□□□□ -1.6
ASM4	YDL088C	WHI5	Q12416	295 aa		5.05	□□□□□ -1.6
ASM4	YDL088C	VMA4	P22203	233 aa	Known RBP	5.04	□□□□□ -1.6
ASM4	YDL088C	GTS1	P40956	396 aa		5.04	□□□□□ -1.6
ASM4	YDL088C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	5.04	□□□□□ -1.6	not detected
ASM4	YDL088C	GAS1	P22146	559 aa	Known RBP	5.04	□□□□□ -1.6
ASM4	YDL088C	RPT1	P33299	467 aa	Known RBP	5.04	□□□□□ -1.6
ASM4	YDL088C	SLD2	P34252	453 aa		5.04	□□□□□ -1.6
ASM4	YDL088C	PEX7	P39108	375 aa		5.04	□□□□□ -1.6
ASM4	YDL088C	PRP43	P53131	767 aa	Known RBP	5.04	□□□□□ -1.6
ASM4	YDL088C	IPL1	P38991	367 aa		5.03	□□□□□ -1.6
ASM4	YDL088C	UBP5	P39944	805 aa		5.03	□□□□□ -1.6
ASM4	YDL088C	TAF7	Q05021	590 aa		5.03	□□□□□ -1.6
ASM4	YDL088C	RSA3	Q05942	220 aa	Known RBP	5.03	□□□□□ -1.6
ASM4	YDL088C	HRK1	Q08732	759 aa	Known RBP	5.03	□□□□□ -1.6
ASM4	YDL088C	YHL012W	P38709	493 aa		5.02	□□□□□ -1.61
ASM4	YDL088C	NIT1	P40447	199 aa		5.02	□□□□□ -1.61
ASM4	YDL088C	ADI1	Q03677	179 aa		5.02	□□□□□ -1.61
ASM4	YDL088C	TOS4	Q06266	489 aa		5.01	□□□□□ -1.61
ASM4	YDL088C	ADD66	P36040	267 aa		5	□□□□□ -1.61
ASM4	YDL088C	FAA3	P39002	694 aa		5	□□□□□ -1.61
ASM4	YDL088C	FOL2	P51601	243 aa	Known RBP	5	□□□□□ -1.61
ASM4	YDL088C	YGL140C	P53120	1219 aa		4.99	□□□□□ -1.61
ASM4	YDL088C	YPL109C	Q02981	657 aa		4.99	□□□□□ -1.61
ASM4	YDL088C	QNS1	P38795	714 aa	Known RBP	4.99	□□□□□ -1.61
ASM4	YDL088C	VPS53	P47061	822 aa		4.99	□□□□□ -1.61
ASM4	YDL088C	ORC3	P54790	616 aa		4.99	□□□□□ -1.61
ASM4	YDL088C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
ASM4	YDL088C	EST2	Q06163	884 aa		4.99	□□□□□ -1.61
ASM4	YDL088C	LPX1	Q12405	387 aa	Known RBP	4.99	□□□□□ -1.61
ASM4	YDL088C	DED1	P06634	604 aa	Known RBP	4.98	□□□□□ -1.61
ASM4	YDL088C	MDL2	P33311	773 aa		4.98	□□□□□ -1.61
ASM4	YDL088C	YJL045W	P47052	634 aa		4.98	□□□□□ -1.61
ASM4	YDL088C	RKM2	Q03942	479 aa		4.98	□□□□□ -1.61
ASM4	YDL088C	HXK1	P04806	485 aa	Known RBP	4.97	□□□□□ -1.61
ASM4	YDL088C	PRE9	P23638	258 aa	Known RBP	4.97	□□□□□ -1.61
ASM4	YDL088C	AIM26	P32858	118 aa		4.97	□□□□□ -1.61
ASM4	YDL088C	RDH54	P38086	958 aa		4.96	□□□□□ -1.62
ASM4	YDL088C	MRPS18	P42847	217 aa		4.96	□□□□□ -1.62
ASM4	YDL088C	SAM35	P14693	329 aa		4.95	□□□□□ -1.62
ASM4	YDL088C	SEC23	P15303	768 aa	Known RBP	4.95	□□□□□ -1.62
ASM4	YDL088C	SEN54	Q02825	467 aa	Predicted RBP	4.95	□□□□□ -1.62
ASM4	YDL088C	NBA1	Q08229	501 aa	Known RBP	4.95	□□□□□ -1.62
ASM4	YDL088C	MGE1	P38523	228 aa		4.95	□□□□□ -1.62
ASM4	YDL088C	ETP1	P38748	585 aa	Known RBP	4.95	□□□□□ -1.62
ASM4	YDL088C	PIC2	P40035	300 aa		4.95	□□□□□ -1.62
ASM4	YDL088C	CDA2	Q06703	312 aa		4.95	□□□□□ -1.62
ASM4	YDL088C	MCD1	Q12158	566 aa		4.95	□□□□□ -1.62
ASM4	YDL088C	PTC5	Q12511	572 aa		4.95	□□□□□ -1.62
ASM4	YDL088C	COQ4	O13525	335 aa		4.94	□□□□□ -1.62
ASM4	YDL088C	HEM13	P11353	328 aa	Known RBP	4.94	□□□□□ -1.62
ASM4	YDL088C	SRO9	P25567	434 aa	Known RBP	4.94	□□□□□ -1.62
ASM4	YDL088C	YGR122W	P53272	402 aa		4.94	□□□□□ -1.62
ASM4	YDL088C	MRPL22	P53881	309 aa		4.94	□□□□□ -1.62
ASM4	YDL088C	YSC84	P32793	468 aa		4.93	□□□□□ -1.62
ASM4	YDL088C	POL32	P47110	350 aa		4.93	□□□□□ -1.62
ASM4	YDL088C	KIP1	P28742	1111 aa		4.92	□□□□□ -1.62
ASM4	YDL088C	TSA1	P34760	196 aa	Known RBP	4.92	□□□□□ -1.62
ASM4	YDL088C	GPB2	P39717	880 aa		4.92	□□□□□ -1.62
ASM4	YDL088C	RPS26A	P39938	119 aa	Known RBP	4.92	□□□□□ -1.62
ASM4	YDL088C	RPS26B	P39939	119 aa	Known RBP	4.92	□□□□□ -1.62
ASM4	YDL088C	SPS1	P08458	490 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	TAF13	P11747	167 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	AFG2	P32794	780 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	YKL222C	P35995	705 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	ALG3	P38179	458 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	CCZ1	P38273	704 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	RSB1	Q08417	382 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	YOR352W	Q08816	343 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	YDL177C	Q12257	170 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	RAD2	P07276	1031 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	AIM3	P38266	947 aa	Known RBP	4.91	□□□□□ -1.62
ASM4	YDL088C	SNO2	P53823	222 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	HDA2	Q06629	674 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	RSC58	Q07979	502 aa		4.91	□□□□□ -1.62
ASM4	YDL088C	TNA1	P53322	534 aa		4.9	□□□□□ -1.63
ASM4	YDL088C	ROD1	Q02805	837 aa		4.9	□□□□□ -1.63
ASM4	YDL088C	HOS3	Q02959	697 aa	Known RBP	4.9	□□□□□ -1.63
ASM4	YDL088C	MCM2	P29469	868 aa		4.89	□□□□□ -1.63
ASM4	YDL088C	MRL1	Q06815	381 aa		4.89	□□□□□ -1.63
ASM4	YDL088C	SPO21	Q12411	609 aa		4.89	□□□□□ -1.63
ASM4	YDL088C	CYC8	P14922	966 aa		4.88	□□□□□ -1.63
ASM4	YDL088C	PRP6	P19735	899 aa	Predicted RBP	4.88	□□□□□ -1.63
ASM4	YDL088C	RAT1	Q02792	1006 aa	Known RBP	4.88	□□□□□ -1.63
ASM4	YDL088C	YML020W	Q03722	664 aa		4.88	□□□□□ -1.63
ASM4	YDL088C	ESC8	Q08119	714 aa		4.88	□□□□□ -1.63
ASM4	YDL088C	YPL260W	Q08977	551 aa		4.88	□□□□□ -1.63
ASM4	YDL088C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
ASM4	YDL088C	PEP7	P32609	515 aa		4.87	□□□□□ -1.63
ASM4	YDL088C	SEC8	P32855	1065 aa		4.87	□□□□□ -1.63
ASM4	YDL088C	RIM8	P53179	542 aa		4.87	□□□□□ -1.63
ASM4	YDL088C	RCL1	Q08096	367 aa	Predicted RBP	4.87	□□□□□ -1.63
ASM4	YDL088C	SIW14	P53965	281 aa		4.87	□□□□□ -1.63
ASM4	YDL088C	ATE1	P16639	503 aa		4.86	□□□□□ -1.63
ASM4	YDL088C	MKK2	P32491	506 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms