RNA–Protein interactions for RNA: ENST00000480484.5

COMMD4-203, Transcript of COMM domain containing 4, humanhuman

TSL 1 (best)

Gene COMMD4, Length 3,225 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-203ENST00000480484 U2AF1Q01081 240 aaKnown RBP eCLIP12.58□□□□□ -0.4
COMMD4-203ENST00000480484 ISY1Q9ULR0 285 aaKnown RBP12.58□□□□□ -0.4
COMMD4-203ENST00000480484 ANKRD36BQ8N2N9 1353 aa12.58□□□□□ -0.4
COMMD4-203ENST00000480484 MSNP26038 577 aaKnown RBP12.58□□□□□ -0.4
COMMD4-203ENST00000480484 EXOSC9Q06265 439 aaKnown RBP12.58□□□□□ -0.4
COMMD4-203ENST00000480484 LNPKQ9C0E8 428 aa12.58□□□□□ -0.4
COMMD4-203ENST00000480484 CARNS1A5YM72 827 aa12.57□□□□□ -0.4
COMMD4-203ENST00000480484 RUNDC1Q96C34 613 aa12.57□□□□□ -0.4
COMMD4-203ENST00000480484 THUMPD2Q9BTF0 503 aaKnown RBP12.57□□□□□ -0.4
COMMD4-203ENST00000480484 SLC52A1Q9NWF4 448 aa12.57□□□□□ -0.4
COMMD4-203ENST00000480484 STRCP1A6NGW2 1772 aa12.57□□□□□ -0.4
COMMD4-203ENST00000480484 NASPP49321 788 aaPredicted RBP12.57□□□□□ -0.4
COMMD4-203ENST00000480484 ITPRIPQ8IWB1 547 aa12.57□□□□□ -0.4
COMMD4-203ENST00000480484 ELL2O00472 640 aaPredicted RBP12.56□□□□□ -0.4
COMMD4-203ENST00000480484 U2SURPO15042 1029 aaKnown RBP12.56□□□□□ -0.4
COMMD4-203ENST00000480484 TRIM27P14373 513 aa12.56□□□□□ -0.4
COMMD4-203ENST00000480484 SSH1Q8WYL5 1049 aa12.56□□□□□ -0.4
COMMD4-203ENST00000480484 R3HCC1Q9Y3T6 440 aaKnown RBP12.56□□□□□ -0.4
COMMD4-203ENST00000480484 AK9Q5TCS8 1911 aa12.56□□□□□ -0.4
COMMD4-203ENST00000480484 ATAD2Q6PL18 1390 aa12.56□□□□□ -0.4
COMMD4-203ENST00000480484 TEX2Q8IWB9 1127 aa12.55□□□□□ -0.4
COMMD4-203ENST00000480484 USP32Q8NFA0 1604 aa12.55□□□□□ -0.4
COMMD4-203ENST00000480484 USP54Q70EL1 1684 aa12.55□□□□□ -0.4
COMMD4-203ENST00000480484 STAG3Q9UJ98 1225 aa12.55□□□□□ -0.4
COMMD4-203ENST00000480484 CCDC173Q0VFZ6 552 aa12.54□□□□□ -0.4
COMMD4-203ENST00000480484 ZSCAN30Q86W11 494 aa12.54□□□□□ -0.4
COMMD4-203ENST00000480484 NCLP19338 710 aaKnown RBP12.54□□□□□ -0.4
COMMD4-203ENST00000480484 MVPQ14764 893 aaKnown RBP12.54□□□□□ -0.4
COMMD4-203ENST00000480484 TMEM57Q8N5G2 664 aa12.54□□□□□ -0.4
COMMD4-203ENST00000480484 POM121Q96HA1 1249 aa12.54□□□□□ -0.4
COMMD4-203ENST00000480484 SMC4Q9NTJ3 1288 aa12.54□□□□□ -0.4
COMMD4-203ENST00000480484 YTHDC2Q9H6S0 1430 aaKnown RBP12.54□□□□□ -0.4
COMMD4-203ENST00000480484 KDM4FA0A1W2PPD8 638 aa12.54□□□□□ -0.4
COMMD4-203ENST00000480484 SKOR2Q2VWA4 1001 aaPredicted RBP12.54□□□□□ -0.4
COMMD4-203ENST00000480484 NOB1Q9ULX3 412 aaKnown RBP12.54□□□□□ -0.4
COMMD4-203ENST00000480484 LTBP4Q8N2S1 1624 aa12.54□□□□□ -0.4
COMMD4-203ENST00000480484 ADGRB2O60241 1585 aa12.53□□□□□ -0.4
COMMD4-203ENST00000480484 AAMPQ13685 434 aa12.53□□□□□ -0.4
COMMD4-203ENST00000480484 WAPLQ7Z5K2 1190 aa12.53□□□□□ -0.4
COMMD4-203ENST00000480484 CFAP53Q96M91 514 aa12.53□□□□□ -0.4
COMMD4-203ENST00000480484 DDX49Q9Y6V7 483 aaKnown RBP12.53□□□□□ -0.4
COMMD4-203ENST00000480484 DZIP1LQ8IYY4 767 aaKnown RBP12.52□□□□□ -0.4
COMMD4-203ENST00000480484 CNPY4Q8N129 248 aa12.52□□□□□ -0.4
COMMD4-203ENST00000480484 NGEFQ8N5V2 710 aa12.52□□□□□ -0.4
COMMD4-203ENST00000480484 CD163L1Q9NR16 1453 aa12.52□□□□□ -0.4
COMMD4-203ENST00000480484 FYB1O15117 783 aa12.52□□□□□ -0.41
COMMD4-203ENST00000480484 ZKSCAN2Q63HK3 967 aa12.52□□□□□ -0.41
COMMD4-203ENST00000480484 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.52□□□□□ -0.41
COMMD4-203ENST00000480484 CCDC97Q96F63 343 aaPredicted RBP12.52□□□□□ -0.41
COMMD4-203ENST00000480484 ABCC11Q96J66 1382 aa12.52□□□□□ -0.41
COMMD4-203ENST00000480484 GOLGA6L22H0YM25 854 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 OFD1O75665 1012 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 RIPK4P57078 832 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 RAB3GAP1Q15042 981 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 CDK19Q9BWU1 502 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 IGSF5Q9NSI5 407 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 LOC102724159A0A0B4J2E5 919 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 PLEKHG3A1L390 1219 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 SSFA2P28290 1259 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 FLIIQ13045 1269 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 PWP2Q15269 919 aaKnown RBP12.51□□□□□ -0.41
COMMD4-203ENST00000480484 NOL8Q76FK4 1167 aaKnown RBP12.51□□□□□ -0.41
COMMD4-203ENST00000480484 CABP1Q9NZU7 370 aa12.51□□□□□ -0.41
COMMD4-203ENST00000480484 A6NJR5 290 aa12.5□□□□□ -0.41
COMMD4-203ENST00000480484 ZMYM3Q14202 1370 aa12.5□□□□□ -0.41
COMMD4-203ENST00000480484 CALD1Q05682 793 aaKnown RBP12.5□□□□□ -0.41
COMMD4-203ENST00000480484 DDIT3P35638 169 aa12.5□□□□□ -0.41
COMMD4-203ENST00000480484 PKP1Q13835 747 aa12.5□□□□□ -0.41
COMMD4-203ENST00000480484 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.5□□□□□ -0.41
COMMD4-203ENST00000480484 SMC5Q8IY18 1101 aa12.5□□□□□ -0.41
COMMD4-203ENST00000480484 TRIM35Q9UPQ4 493 aa12.5□□□□□ -0.41
COMMD4-203ENST00000480484 ARIH1Q9Y4X5 557 aaPredicted RBP12.5□□□□□ -0.41
COMMD4-203ENST00000480484 XPCQ01831 940 aaPredicted RBP12.49□□□□□ -0.41
COMMD4-203ENST00000480484 CPS1P31327 1500 aa12.49□□□□□ -0.41
COMMD4-203ENST00000480484 DTNBO60941 627 aa12.49□□□□□ -0.41
COMMD4-203ENST00000480484 NSD2O96028 1365 aa12.49□□□□□ -0.41
COMMD4-203ENST00000480484 PPP1R9BQ96SB3 815 aa12.48□□□□□ -0.41
COMMD4-203ENST00000480484 KIF2CQ99661 725 aa12.48□□□□□ -0.41
COMMD4-203ENST00000480484 SNX21Q969T3 373 aa12.48□□□□□ -0.41
COMMD4-203ENST00000480484 UQCRHLA0A096LP55 91 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 UQCRHP07919 91 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 TSPYL6Q8N831 410 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 COL3A1P02461 1466 aaPredicted RBP12.47□□□□□ -0.41
COMMD4-203ENST00000480484 TESPA1A2RU30 521 aaPredicted RBP12.47□□□□□ -0.41
COMMD4-203ENST00000480484 PTMSP20962 102 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 CAVIN1Q6NZI2 390 aaKnown RBP12.47□□□□□ -0.41
COMMD4-203ENST00000480484 WDR63Q8IWG1 891 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 PLEKHF1Q96S99 279 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 TERF2IPQ9NYB0 399 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 DLC1Q96QB1 1528 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 NCKAP5LQ9HCH0 1330 aa12.47□□□□□ -0.41
COMMD4-203ENST00000480484 NCOA3Q9Y6Q9 1424 aa12.46□□□□□ -0.41
COMMD4-203ENST00000480484 PDE4DQ08499 809 aa12.46□□□□□ -0.41
COMMD4-203ENST00000480484 MCTP1Q6DN14 999 aa12.46□□□□□ -0.41
COMMD4-203ENST00000480484 MPNDQ8N594 471 aa12.46□□□□□ -0.41
COMMD4-203ENST00000480484 PRDM4Q9UKN5 801 aa12.46□□□□□ -0.41
COMMD4-203ENST00000480484 STK25O00506 426 aa12.46□□□□□ -0.42
COMMD4-203ENST00000480484 C16orf71Q8IYS4 520 aaPredicted RBP12.46□□□□□ -0.42
COMMD4-203ENST00000480484 SIRT1Q96EB6 747 aa12.46□□□□□ -0.42
COMMD4-203ENST00000480484 K7ELQ4 463 aaPredicted RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 148.9 ms