RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 CRTC2Q53ET0 693 aaPredicted RBP9.15□□□□□ -0.94
UPF3A-205ENST00000479712 TMEM164Q5U3C3 297 aa9.15□□□□□ -0.94
UPF3A-205ENST00000479712 LARP1Q6PKG0 1096 aaKnown RBP9.15□□□□□ -0.94
UPF3A-205ENST00000479712 STK32AQ8WU08 396 aa9.15□□□□□ -0.94
UPF3A-205ENST00000479712 SLC10A4Q96EP9 437 aa9.15□□□□□ -0.94
UPF3A-205ENST00000479712 CHIC2Q9UKJ5 165 aa9.15□□□□□ -0.94
UPF3A-205ENST00000479712 TOP2BQ02880 1626 aa9.15□□□□□ -0.94
UPF3A-205ENST00000479712 TARBP1Q13395 1621 aaKnown RBP9.15□□□□□ -0.94
UPF3A-205ENST00000479712 TOPBP1Q92547 1522 aa9.15□□□□□ -0.95
UPF3A-205ENST00000479712 RASA1P20936 1047 aa9.14□□□□□ -0.95
UPF3A-205ENST00000479712 C4orf48Q5BLP8 95 aa9.14□□□□□ -0.95
UPF3A-205ENST00000479712 DOLKQ9UPQ8 538 aa9.14□□□□□ -0.95
UPF3A-205ENST00000479712 MROH2BQ7Z745 1585 aa9.13□□□□□ -0.95
UPF3A-205ENST00000479712 TRAF7Q6Q0C0 670 aa9.13□□□□□ -0.95
UPF3A-205ENST00000479712 PPEF1O14829 653 aaPredicted RBP9.12□□□□□ -0.95
UPF3A-205ENST00000479712 GIGYF1O75420 1035 aaPredicted RBP9.12□□□□□ -0.95
UPF3A-205ENST00000479712 SH3BP2P78314 561 aa9.12□□□□□ -0.95
UPF3A-205ENST00000479712 KCNC4Q03721 635 aa9.12□□□□□ -0.95
UPF3A-205ENST00000479712 PTK7Q13308 1070 aa9.12□□□□□ -0.95
UPF3A-205ENST00000479712 TSGA10IPQ3SY00 556 aa9.12□□□□□ -0.95
UPF3A-205ENST00000479712 TMCO4Q5TGY1 634 aa9.12□□□□□ -0.95
UPF3A-205ENST00000479712 B4GALNT3Q6L9W6 998 aa9.12□□□□□ -0.95
UPF3A-205ENST00000479712 PCF11O94913 1555 aaKnown RBP9.12□□□□□ -0.95
UPF3A-205ENST00000479712 ZBTB24O43167 697 aaPredicted RBP9.11□□□□□ -0.95
UPF3A-205ENST00000479712 NBPF20Q3BBV1 942 aa9.11□□□□□ -0.95
UPF3A-205ENST00000479712 RNF20Q5VTR2 975 aa9.11□□□□□ -0.95
UPF3A-205ENST00000479712 TRIM50Q86XT4 487 aa9.11□□□□□ -0.95
UPF3A-205ENST00000479712 CCDC85AQ96PX6 553 aaPredicted RBP9.11□□□□□ -0.95
UPF3A-205ENST00000479712 C1QTNF2Q9BXJ5 285 aa9.11□□□□□ -0.95
UPF3A-205ENST00000479712 NOD1Q9Y239 953 aa9.11□□□□□ -0.95
UPF3A-205ENST00000479712 HSPA2P54652 639 aa9.1□□□□□ -0.95
UPF3A-205ENST00000479712 OXLD1Q5BKU9 147 aa9.1□□□□□ -0.95
UPF3A-205ENST00000479712 OGFOD1Q8N543 542 aa9.1□□□□□ -0.95
UPF3A-205ENST00000479712 FAM200AQ8TCP9 573 aa9.1□□□□□ -0.95
UPF3A-205ENST00000479712 TDRD9Q8NDG6 1382 aaKnown RBP9.1□□□□□ -0.95
UPF3A-205ENST00000479712 COL17A1Q9UMD9 1497 aaPredicted RBP9.09□□□□□ -0.95
UPF3A-205ENST00000479712 LCE2BO14633 110 aa9.09□□□□□ -0.95
UPF3A-205ENST00000479712 ATP1A2P50993 1020 aa9.09□□□□□ -0.95
UPF3A-205ENST00000479712 ANKMY2Q8IV38 441 aa9.09□□□□□ -0.95
UPF3A-205ENST00000479712 DNAAF2Q9NVR5 837 aaKnown RBP9.09□□□□□ -0.95
UPF3A-205ENST00000479712 CDV3Q9UKY7 258 aaKnown RBP9.09□□□□□ -0.95
UPF3A-205ENST00000479712 IVNS1ABPQ9Y6Y0 642 aa9.09□□□□□ -0.95
UPF3A-205ENST00000479712 RNF223E7ERA6 249 aa9.08□□□□□ -0.96
UPF3A-205ENST00000479712 GGCXP38435 758 aa9.08□□□□□ -0.96
UPF3A-205ENST00000479712 CLDN10P78369 228 aa9.08□□□□□ -0.96
UPF3A-205ENST00000479712 TRIM32Q13049 653 aa9.08□□□□□ -0.96
UPF3A-205ENST00000479712 TRMT44Q8IYL2 757 aaKnown RBP9.08□□□□□ -0.96
UPF3A-205ENST00000479712 ZNF594Q96JF6 807 aaPredicted RBP9.08□□□□□ -0.96
UPF3A-205ENST00000479712 CDCA7Q9BWT1 371 aaPredicted RBP9.08□□□□□ -0.96
UPF3A-205ENST00000479712 MAPKBP1O60336 1514 aa9.08□□□□□ -0.96
UPF3A-205ENST00000479712 CEP170Q5SW79 1584 aa9.07□□□□□ -0.96
UPF3A-205ENST00000479712 ANKLE1Q8NAG6 615 aa9.07□□□□□ -0.96
UPF3A-205ENST00000479712 ESPNB1AK53 854 aa9.06□□□□□ -0.96
UPF3A-205ENST00000479712 GTF2IP78347 998 aa9.06□□□□□ -0.96
UPF3A-205ENST00000479712 DPYDQ12882 1025 aa9.06□□□□□ -0.96
UPF3A-205ENST00000479712 SEPT12Q8IYM1 358 aa9.06□□□□□ -0.96
UPF3A-205ENST00000479712 LARGE2Q8N3Y3 721 aa9.06□□□□□ -0.96
UPF3A-205ENST00000479712 PCDHB11Q9Y5F2 797 aa9.06□□□□□ -0.96
UPF3A-205ENST00000479712 PPRC1Q5VV67 1664 aaKnown RBP9.05□□□□□ -0.96
UPF3A-205ENST00000479712 MFAP1P55081 439 aaKnown RBP9.05□□□□□ -0.96
UPF3A-205ENST00000479712 LAPTM4AQ15012 233 aa9.05□□□□□ -0.96
UPF3A-205ENST00000479712 PLA2G2CQ5R387 149 aa9.05□□□□□ -0.96
UPF3A-205ENST00000479712 CCDC125Q86Z20 511 aa9.05□□□□□ -0.96
UPF3A-205ENST00000479712 SIRT1Q96EB6 747 aa9.05□□□□□ -0.96
UPF3A-205ENST00000479712 MED1Q15648 1581 aaPredicted RBP9.04□□□□□ -0.96
UPF3A-205ENST00000479712 RAD54L2Q9Y4B4 1467 aa9.04□□□□□ -0.96
UPF3A-205ENST00000479712 VARSP26640 1264 aaKnown RBP9.04□□□□□ -0.96
UPF3A-205ENST00000479712 WNT7BP56706 349 aa9.04□□□□□ -0.96
UPF3A-205ENST00000479712 RAB15P59190 212 aa9.04□□□□□ -0.96
UPF3A-205ENST00000479712 NPM2Q86SE8 214 aaKnown RBP9.04□□□□□ -0.96
UPF3A-205ENST00000479712 SIX5Q8N196 739 aa9.04□□□□□ -0.96
UPF3A-205ENST00000479712 CLP1Q92989 425 aaKnown RBP9.04□□□□□ -0.96
UPF3A-205ENST00000479712 KCTD15Q96SI1 283 aaPredicted RBP9.04□□□□□ -0.96
UPF3A-205ENST00000479712 KIAA1024Q9UPX6 916 aa9.04□□□□□ -0.96
UPF3A-205ENST00000479712 RBM19Q9Y4C8 960 aaKnown RBP9.04□□□□□ -0.96
UPF3A-205ENST00000479712 PTPRMP28827 1452 aa9.03□□□□□ -0.96
UPF3A-205ENST00000479712 SKOR1P84550 965 aa9.03□□□□□ -0.96
UPF3A-205ENST00000479712 PSME1Q06323 249 aa9.03□□□□□ -0.96
UPF3A-205ENST00000479712 USP4Q13107 963 aa9.03□□□□□ -0.96
UPF3A-205ENST00000479712 SWI5Q1ZZU3 235 aa9.03□□□□□ -0.96
UPF3A-205ENST00000479712 SLAIN2Q9P270 581 aa9.03□□□□□ -0.96
UPF3A-205ENST00000479712 GNEQ9Y223 722 aaKnown RBP9.03□□□□□ -0.96
UPF3A-205ENST00000479712 MAGI1Q96QZ7 1491 aaPredicted RBP9.02□□□□□ -0.96
UPF3A-205ENST00000479712 ZBTB7BO15156 539 aaPredicted RBP9.02□□□□□ -0.97
UPF3A-205ENST00000479712 GFRA3O60609 400 aa9.02□□□□□ -0.97
UPF3A-205ENST00000479712 SSFA2P28290 1259 aa9.02□□□□□ -0.97
UPF3A-205ENST00000479712 RANGAP1P46060 587 aaPredicted RBP9.02□□□□□ -0.97
UPF3A-205ENST00000479712 PHLDB3Q6NSJ2 640 aa9.02□□□□□ -0.97
UPF3A-205ENST00000479712 VASH1Q7L8A9 365 aaPredicted RBP9.02□□□□□ -0.97
UPF3A-205ENST00000479712 DKK1O94907 266 aa9.01□□□□□ -0.97
UPF3A-205ENST00000479712 RPIAP49247 311 aa9.01□□□□□ -0.97
UPF3A-205ENST00000479712 SEC13P55735 322 aa9.01□□□□□ -0.97
UPF3A-205ENST00000479712 CCDC102BQ68D86 513 aa9.01□□□□□ -0.97
UPF3A-205ENST00000479712 PPP1R18Q6NYC8 613 aa9.01□□□□□ -0.97
UPF3A-205ENST00000479712 TPCN2Q8NHX9 752 aa9.01□□□□□ -0.97
UPF3A-205ENST00000479712 CCER1Q8TC90 406 aaPredicted RBP9.01□□□□□ -0.97
UPF3A-205ENST00000479712 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.01□□□□□ -0.97
UPF3A-205ENST00000479712 MAP4K5Q9Y4K4 846 aa9.01□□□□□ -0.97
UPF3A-205ENST00000479712 MYCP01106 439 aaPredicted RBP9□□□□□ -0.97
UPF3A-205ENST00000479712 ATP2B4P23634 1241 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms