RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 AEBP2Q6ZN18 517 aaPredicted RBP23.48■■□□□ 1.35
UPF3A-205ENST00000479712 CHIC1Q5VXU3 224 aa21.89■■□□□ 1.09
UPF3A-205ENST00000479712 SENP3Q9H4L4 574 aaPredicted RBP20.03■□□□□ 0.8
UPF3A-205ENST00000479712 PHF23Q9BUL5 403 aaPredicted RBP19.76■□□□□ 0.75
UPF3A-205ENST00000479712 FOXD1Q16676 465 aa18.76■□□□□ 0.59
UPF3A-205ENST00000479712 PLPPR3Q6T4P5 718 aa17.95■□□□□ 0.46
UPF3A-205ENST00000479712 POTEDQ86YR6 584 aa17.95■□□□□ 0.46
UPF3A-205ENST00000479712 MSH5O43196 834 aa17.66■□□□□ 0.42
UPF3A-205ENST00000479712 PIAS4Q8N2W9 510 aaPredicted RBP17.4■□□□□ 0.38
UPF3A-205ENST00000479712 PPP6R1Q9UPN7 881 aa17.27■□□□□ 0.36
UPF3A-205ENST00000479712 ADRA2BP18089 450 aa17.17■□□□□ 0.34
UPF3A-205ENST00000479712 KCNA4P22459 653 aa16.13■□□□□ 0.17
UPF3A-205ENST00000479712 MAPK8IP2Q13387 824 aaPredicted RBP15.9■□□□□ 0.14
UPF3A-205ENST00000479712 PPP4R3CPQ6ZMV5 832 aa15.88■□□□□ 0.13
UPF3A-205ENST00000479712 DMRT2Q9Y5R5 561 aa15.85■□□□□ 0.13
UPF3A-205ENST00000479712 EHMT2Q96KQ7 1210 aa15.67■□□□□ 0.1
UPF3A-205ENST00000479712 SCAF1Q9H7N4 1312 aaKnown RBP15.67■□□□□ 0.1
UPF3A-205ENST00000479712 NCBP3Q53F19 620 aaKnown RBP15.63■□□□□ 0.09
UPF3A-205ENST00000479712 SLC4A1APQ9BWU0 796 aaKnown RBP15.47■□□□□ 0.07
UPF3A-205ENST00000479712 NPM3O75607 178 aaKnown RBP15.4■□□□□ 0.06
UPF3A-205ENST00000479712 CACNB1Q02641 598 aaPredicted RBP15.4■□□□□ 0.06
UPF3A-205ENST00000479712 CNKSR2Q8WXI2 1034 aa15.32■□□□□ 0.04
UPF3A-205ENST00000479712 CSRNP3Q8WYN3 585 aa15.2■□□□□ 0.02
UPF3A-205ENST00000479712 DCAF8L1A6NGE4 600 aa15.17■□□□□ 0.02
UPF3A-205ENST00000479712 HOXD11P31277 338 aaPredicted RBP15.13■□□□□ 0.01
UPF3A-205ENST00000479712 RNF39Q9H2S5 420 aa15.06■□□□□ 0
UPF3A-205ENST00000479712 RNF216Q9NWF9 866 aaPredicted RBP14.89□□□□□ -0.03
UPF3A-205ENST00000479712 ZBTB22O15209 634 aa14.85□□□□□ -0.03
UPF3A-205ENST00000479712 DNAJC5BQ9UF47 199 aa14.83□□□□□ -0.04
UPF3A-205ENST00000479712 C1QBPQ07021 282 aaKnown RBP14.81□□□□□ -0.04
UPF3A-205ENST00000479712 FOXD4L1Q9NU39 408 aa14.69□□□□□ -0.06
UPF3A-205ENST00000479712 SLC4A2P04920 1241 aa14.39□□□□□ -0.11
UPF3A-205ENST00000479712 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.36□□□□□ -0.118e-9■□□□□ 9.1
UPF3A-205ENST00000479712 MYCNP04198 464 aaPredicted RBP14.23□□□□□ -0.13
UPF3A-205ENST00000479712 ATXN8OSP0DMR3 200 aa14.12□□□□□ -0.15
UPF3A-205ENST00000479712 U3KPZ7 1027 aaPredicted RBP14.05□□□□□ -0.16
UPF3A-205ENST00000479712 DSG3P32926 999 aa13.99□□□□□ -0.17
UPF3A-205ENST00000479712 POTEHQ6S545 545 aa13.98□□□□□ -0.17
UPF3A-205ENST00000479712 SPINK5Q9NQ38 1064 aaPredicted RBP13.97□□□□□ -0.17
UPF3A-205ENST00000479712 CAPN15O75808 1086 aa13.93□□□□□ -0.18
UPF3A-205ENST00000479712 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.85□□□□□ -0.19
UPF3A-205ENST00000479712 HNRNPUL2Q1KMD3 747 aaKnown RBP13.85□□□□□ -0.19
UPF3A-205ENST00000479712 SAMD1Q6SPF0 538 aaPredicted RBP13.82□□□□□ -0.2
UPF3A-205ENST00000479712 ATF5Q9Y2D1 282 aaPredicted RBP13.79□□□□□ -0.2
UPF3A-205ENST00000479712 FKBP8Q14318 412 aa13.73□□□□□ -0.21
UPF3A-205ENST00000479712 TRHP20396 242 aaPredicted RBP13.62□□□□□ -0.23
UPF3A-205ENST00000479712 ABCB7O75027 752 aa13.58□□□□□ -0.24
UPF3A-205ENST00000479712 APLP2Q06481 763 aa13.58□□□□□ -0.24
UPF3A-205ENST00000479712 ZNF219Q9P2Y4 722 aaPredicted RBP13.56□□□□□ -0.24
UPF3A-205ENST00000479712 AMER1Q5JTC6 1135 aaPredicted RBP13.46□□□□□ -0.25
UPF3A-205ENST00000479712 RTN4Q9NQC3 1192 aaKnown RBP13.44□□□□□ -0.26
UPF3A-205ENST00000479712 RBM42Q9BTD8 480 aaKnown RBP13.3□□□□□ -0.28
UPF3A-205ENST00000479712 MKRN4PQ13434 485 aaPredicted RBP13.22□□□□□ -0.29
UPF3A-205ENST00000479712 SPDYE4A6NLX3 237 aa13.2□□□□□ -0.3
UPF3A-205ENST00000479712 FBLN2P98095 1184 aa13.2□□□□□ -0.3
UPF3A-205ENST00000479712 POLA2Q14181 598 aa13.19□□□□□ -0.3
UPF3A-205ENST00000479712 CHRDL2Q6WN34 429 aa13.19□□□□□ -0.3
UPF3A-205ENST00000479712 FBXO3Q9UK99 471 aa13.1□□□□□ -0.31
UPF3A-205ENST00000479712 PROM2Q8N271 834 aa13.04□□□□□ -0.32
UPF3A-205ENST00000479712 SLC24A1O60721 1099 aa13.03□□□□□ -0.32
UPF3A-205ENST00000479712 ZBTB12Q9Y330 459 aaPredicted RBP13.02□□□□□ -0.33
UPF3A-205ENST00000479712 AKT1S1Q96B36 256 aa12.95□□□□□ -0.34
UPF3A-205ENST00000479712 SP7Q8TDD2 431 aaPredicted RBP12.92□□□□□ -0.34
UPF3A-205ENST00000479712 VASPP50552 380 aaPredicted RBP12.9□□□□□ -0.34
UPF3A-205ENST00000479712 REM2Q8IYK8 340 aaPredicted RBP12.83□□□□□ -0.36
UPF3A-205ENST00000479712 PIP4P2Q8N4L2 257 aa12.81□□□□□ -0.36
UPF3A-205ENST00000479712 IFNLR1Q8IU57 520 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-205ENST00000479712 OSCARQ8IYS5 282 aa12.75□□□□□ -0.37
UPF3A-205ENST00000479712 ZNF692Q9BU19 519 aaPredicted RBP12.74□□□□□ -0.37
UPF3A-205ENST00000479712 SPDYE2BA6NHP3 402 aa12.7□□□□□ -0.38
UPF3A-205ENST00000479712 SPDYE6P0CI01 402 aa12.7□□□□□ -0.38
UPF3A-205ENST00000479712 SPDYE2Q495Y8 402 aa12.7□□□□□ -0.38
UPF3A-205ENST00000479712 PITPNM1O00562 1244 aa12.69□□□□□ -0.38
UPF3A-205ENST00000479712 FXR2P51116 673 aaKnown RBP eCLIP12.69□□□□□ -0.38
UPF3A-205ENST00000479712 HAX1O00165 279 aa12.67□□□□□ -0.38
UPF3A-205ENST00000479712 SSUH2Q9Y2M2 353 aa12.65□□□□□ -0.38
UPF3A-205ENST00000479712 STAG3Q9UJ98 1225 aa12.6□□□□□ -0.39
UPF3A-205ENST00000479712 PABPN1Q86U42 306 aaKnown RBP eCLIP12.59□□□□□ -0.39
UPF3A-205ENST00000479712 KLHL34Q8N239 644 aa12.57□□□□□ -0.4
UPF3A-205ENST00000479712 EVX2Q03828 476 aa12.54□□□□□ -0.4
UPF3A-205ENST00000479712 PKD2Q13563 968 aa12.53□□□□□ -0.4
UPF3A-205ENST00000479712 SPOCK2Q92563 424 aa12.53□□□□□ -0.4
UPF3A-205ENST00000479712 DCAF8L2P0C7V8 631 aa12.52□□□□□ -0.41
UPF3A-205ENST00000479712 PLCD3Q8N3E9 789 aa12.52□□□□□ -0.41
UPF3A-205ENST00000479712 MIER1Q8N108 512 aa12.46□□□□□ -0.41
UPF3A-205ENST00000479712 PLCB2Q00722 1185 aa12.43□□□□□ -0.42
UPF3A-205ENST00000479712 ECM2O94769 699 aaPredicted RBP12.38□□□□□ -0.43
UPF3A-205ENST00000479712 PLEKHG5O94827 1062 aa12.38□□□□□ -0.43
UPF3A-205ENST00000479712 PRKAR2AP13861 404 aaKnown RBP12.36□□□□□ -0.43
UPF3A-205ENST00000479712 ZBTB47Q9UFB7 747 aaPredicted RBP12.33□□□□□ -0.44
UPF3A-205ENST00000479712 CLEC11AQ9Y240 323 aa12.32□□□□□ -0.44
UPF3A-205ENST00000479712 SPDYE1Q8NFV5 336 aaPredicted RBP12.31□□□□□ -0.44
UPF3A-205ENST00000479712 C19orf67A6NJJ6 358 aa12.29□□□□□ -0.44
UPF3A-205ENST00000479712 HAP1P54257 671 aaPredicted RBP12.27□□□□□ -0.45
UPF3A-205ENST00000479712 ABCC9O60706 1549 aa12.27□□□□□ -0.45
UPF3A-205ENST00000479712 CIZ1Q9ULV3 898 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-205ENST00000479712 RGL2O15211 777 aa12.23□□□□□ -0.45
UPF3A-205ENST00000479712 DNAJC5Q9H3Z4 198 aa12.23□□□□□ -0.45
UPF3A-205ENST00000479712 GABBR2O75899 941 aa12.21□□□□□ -0.45
UPF3A-205ENST00000479712 BBXQ8WY36 941 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms