RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 NME9Q86XW9 330 aa22.77■■□□□ 1.24
CCDC3-201ENST00000378825 SDSP20132 328 aa22.76■■□□□ 1.23
CCDC3-201ENST00000378825 ZNF428Q96B54 188 aa22.76■■□□□ 1.23
CCDC3-201ENST00000378825 DCTPP1Q9H773 170 aa22.76■■□□□ 1.23
CCDC3-201ENST00000378825 IFT57Q9NWB7 429 aa22.76■■□□□ 1.23
CCDC3-201ENST00000378825 ANP32BQ92688 251 aaKnown RBP22.75■■□□□ 1.23
CCDC3-201ENST00000378825 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.75■■□□□ 1.23
CCDC3-201ENST00000378825 METP08581 1390 aa22.75■■□□□ 1.23
CCDC3-201ENST00000378825 MSNP26038 577 aaKnown RBP22.75■■□□□ 1.23
CCDC3-201ENST00000378825 ZNF445P59923 1031 aa22.75■■□□□ 1.23
CCDC3-201ENST00000378825 XPCQ01831 940 aaPredicted RBP22.75■■□□□ 1.23
CCDC3-201ENST00000378825 RRS1Q15050 365 aaKnown RBP22.74■■□□□ 1.23
CCDC3-201ENST00000378825 OFD1O75665 1012 aa22.74■■□□□ 1.23
CCDC3-201ENST00000378825 TPM2P07951 284 aa22.74■■□□□ 1.23
CCDC3-201ENST00000378825 ESF1Q9H501 851 aaKnown RBP22.74■■□□□ 1.23
CCDC3-201ENST00000378825 IL13P35225 146 aa22.73■■□□□ 1.23
CCDC3-201ENST00000378825 MAP2P11137 1827 aaKnown RBP22.73■■□□□ 1.23
CCDC3-201ENST00000378825 R3HCC1Q9Y3T6 440 aaKnown RBP22.73■■□□□ 1.23
CCDC3-201ENST00000378825 IBTKQ9P2D0 1353 aaPredicted RBP22.73■■□□□ 1.23
CCDC3-201ENST00000378825 NUCB2P80303 420 aa22.72■■□□□ 1.23
CCDC3-201ENST00000378825 CFAP44Q96MT7 982 aa22.72■■□□□ 1.23
CCDC3-201ENST00000378825 TMEM63CQ9P1W3 806 aa22.72■■□□□ 1.23
CCDC3-201ENST00000378825 WASLO00401 505 aaPredicted RBP22.71■■□□□ 1.23
CCDC3-201ENST00000378825 CHMP4BQ9H444 224 aaKnown RBP22.71■■□□□ 1.23
CCDC3-201ENST00000378825 NUTM2FA1L443 756 aa22.71■■□□□ 1.23
CCDC3-201ENST00000378825 TSHZ3Q63HK5 1081 aa22.71■■□□□ 1.23
CCDC3-201ENST00000378825 API5Q9BZZ5 524 aaKnown RBP22.71■■□□□ 1.23
CCDC3-201ENST00000378825 CDC42BPGQ6DT37 1551 aa22.7■■□□□ 1.22
CCDC3-201ENST00000378825 ATP10DQ9P241 1426 aa22.7■■□□□ 1.22
CCDC3-201ENST00000378825 SYCE3A1L190 88 aa22.7■■□□□ 1.22
CCDC3-201ENST00000378825 MEIS3Q99687 375 aa22.7■■□□□ 1.22
CCDC3-201ENST00000378825 KIF20BQ96Q89 1820 aa22.7■■□□□ 1.22
CCDC3-201ENST00000378825 INTS3Q68E01 1043 aaKnown RBP22.69■■□□□ 1.22
CCDC3-201ENST00000378825 RNF214Q8ND24 703 aa22.69■■□□□ 1.22
CCDC3-201ENST00000378825 CEP85Q6P2H3 762 aa22.69■■□□□ 1.22
CCDC3-201ENST00000378825 ZBTB7CA1YPR0 619 aa22.68■■□□□ 1.22
CCDC3-201ENST00000378825 NUDT16Q96DE0 195 aaKnown RBP22.68■■□□□ 1.22
CCDC3-201ENST00000378825 NOL8Q76FK4 1167 aaKnown RBP22.68■■□□□ 1.22
CCDC3-201ENST00000378825 AEBP1Q8IUX7 1158 aa22.68■■□□□ 1.22
CCDC3-201ENST00000378825 ANKRD44Q8N8A2 993 aa22.68■■□□□ 1.22
CCDC3-201ENST00000378825 PPP6R1Q9UPN7 881 aa22.68■■□□□ 1.22
CCDC3-201ENST00000378825 DLG5Q8TDM6 1919 aa22.68■■□□□ 1.22
CCDC3-201ENST00000378825 PLPPR3Q6T4P5 718 aa22.67■■□□□ 1.22
CCDC3-201ENST00000378825 ARID3AQ99856 593 aa22.67■■□□□ 1.22
CCDC3-201ENST00000378825 FOXD4L6Q3SYB3 417 aaPredicted RBP22.67■■□□□ 1.22
CCDC3-201ENST00000378825 FOXD4L3Q6VB84 417 aaPredicted RBP22.67■■□□□ 1.22
CCDC3-201ENST00000378825 SPATA31D1Q6ZQQ2 1576 aa22.67■■□□□ 1.22
CCDC3-201ENST00000378825 MSH6P52701 1360 aa22.66■■□□□ 1.22
CCDC3-201ENST00000378825 PDLIM2Q96JY6 352 aa22.66■■□□□ 1.22
CCDC3-201ENST00000378825 AGLP35573 1532 aa22.66■■□□□ 1.22
CCDC3-201ENST00000378825 FAM13BQ9NYF5 915 aa22.66■■□□□ 1.22
CCDC3-201ENST00000378825 MPNDQ8N594 471 aa22.65■■□□□ 1.22
CCDC3-201ENST00000378825 NOL7Q9UMY1 257 aaKnown RBP22.65■■□□□ 1.22
CCDC3-201ENST00000378825 RGS12O14924 1447 aa22.64■■□□□ 1.22
CCDC3-201ENST00000378825 PDCL3Q9H2J4 239 aa22.64■■□□□ 1.22
CCDC3-201ENST00000378825 ST18O60284 1047 aa22.64■■□□□ 1.21
CCDC3-201ENST00000378825 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.64■■□□□ 1.21
CCDC3-201ENST00000378825 MCM10Q7L590 875 aa22.64■■□□□ 1.21
CCDC3-201ENST00000378825 MIS18AQ9NYP9 233 aa22.63■■□□□ 1.21
CCDC3-201ENST00000378825 ATP7BP35670 1465 aa22.62■■□□□ 1.21
CCDC3-201ENST00000378825 RTL1A6NKG5 1358 aa22.62■■□□□ 1.21
CCDC3-201ENST00000378825 NEK4P51957 841 aa22.62■■□□□ 1.21
CCDC3-201ENST00000378825 DLC1Q96QB1 1528 aa22.61■■□□□ 1.21
CCDC3-201ENST00000378825 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.61■■□□□ 1.21
CCDC3-201ENST00000378825 COG3Q96JB2 828 aa22.61■■□□□ 1.21
CCDC3-201ENST00000378825 CCDC61Q9Y6R9 512 aa22.61■■□□□ 1.21
CCDC3-201ENST00000378825 SETD1AO15047 1707 aaKnown RBP22.61■■□□□ 1.21
CCDC3-201ENST00000378825 F6X3S4 739 aa22.6■■□□□ 1.21
CCDC3-201ENST00000378825 CWC22Q9HCG8 908 aaKnown RBP22.6■■□□□ 1.21
CCDC3-201ENST00000378825 SOX12O15370 315 aa22.6■■□□□ 1.21
CCDC3-201ENST00000378825 TMX3Q96JJ7 454 aa22.6■■□□□ 1.21
CCDC3-201ENST00000378825 GDPD2Q9HCC8 539 aa22.6■■□□□ 1.21
CCDC3-201ENST00000378825 PALD1Q9ULE6 856 aa22.6■■□□□ 1.21
CCDC3-201ENST00000378825 REREQ9P2R6 1566 aa22.6■■□□□ 1.21
CCDC3-201ENST00000378825 NRXN3Q9Y4C0 1643 aa22.6■■□□□ 1.21
CCDC3-201ENST00000378825 TPRNQ4KMQ1 711 aa22.59■■□□□ 1.21
CCDC3-201ENST00000378825 CPSF1Q10570 1443 aaKnown RBP22.59■■□□□ 1.21
CCDC3-201ENST00000378825 PRR36Q9H6K5 1346 aa22.59■■□□□ 1.21
CCDC3-201ENST00000378825 LRSAM1Q6UWE0 723 aa22.59■■□□□ 1.21
CCDC3-201ENST00000378825 CPS1P31327 1500 aa22.59■■□□□ 1.21
CCDC3-201ENST00000378825 EDC4Q6P2E9 1401 aaKnown RBP22.59■■□□□ 1.21
CCDC3-201ENST00000378825 UQCRHLA0A096LP55 91 aa22.58■■□□□ 1.21
CCDC3-201ENST00000378825 ZNF500O60304 480 aaPredicted RBP22.58■■□□□ 1.21
CCDC3-201ENST00000378825 UQCRHP07919 91 aa22.58■■□□□ 1.21
CCDC3-201ENST00000378825 SLC4A10Q6U841 1118 aa22.58■■□□□ 1.21
CCDC3-201ENST00000378825 ZKSCAN5Q9Y2L8 839 aa22.58■■□□□ 1.21
CCDC3-201ENST00000378825 ERC2O15083 957 aa22.58■■□□□ 1.2
CCDC3-201ENST00000378825 G2E3Q7L622 706 aa22.58■■□□□ 1.2
CCDC3-201ENST00000378825 RPAP2Q8IXW5 612 aaPredicted RBP22.58■■□□□ 1.2
CCDC3-201ENST00000378825 CASC1Q6TDU7 716 aa22.57■■□□□ 1.2
CCDC3-201ENST00000378825 EXOC6BQ9Y2D4 811 aa22.57■■□□□ 1.2
CCDC3-201ENST00000378825 CEBPAP49715 358 aaPredicted RBP22.57■■□□□ 1.2
CCDC3-201ENST00000378825 SULT6B1Q6IMI4 303 aa22.57■■□□□ 1.2
CCDC3-201ENST00000378825 JARID2Q92833 1246 aaPredicted RBP22.57■■□□□ 1.2
CCDC3-201ENST00000378825 REC8O95072 547 aa22.56■■□□□ 1.2
CCDC3-201ENST00000378825 PDE1AP54750 535 aa22.55■■□□□ 1.2
CCDC3-201ENST00000378825 LMOD3Q0VAK6 560 aa22.55■■□□□ 1.2
CCDC3-201ENST00000378825 ROBO2Q9HCK4 1378 aa22.55■■□□□ 1.2
CCDC3-201ENST00000378825 SLC4A2P04920 1241 aa22.55■■□□□ 1.2
CCDC3-201ENST00000378825 HS1BP3Q53T59 392 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms