RNA–Protein interactions for RNA: ENST00000338910.8

PSPC1-201, Transcript of paraspeckle component 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PSPC1, Length 2,407 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-201ENST00000338910 ZNF853P0CG23 659 aa23.53■■□□□ 1.36
PSPC1-201ENST00000338910 PSME1Q06323 249 aa23.53■■□□□ 1.36
PSPC1-201ENST00000338910 ITPRIPQ8IWB1 547 aa23.53■■□□□ 1.36
PSPC1-201ENST00000338910 SPRYD3Q8NCJ5 442 aa23.53■■□□□ 1.36
PSPC1-201ENST00000338910 ORAI2Q96SN7 254 aa23.53■■□□□ 1.36
PSPC1-201ENST00000338910 RWDD1Q9H446 243 aaPredicted RBP23.53■■□□□ 1.36
PSPC1-201ENST00000338910 NWD1Q149M9 1564 aa23.52■■□□□ 1.36
PSPC1-201ENST00000338910 VAMP4O75379 141 aa23.52■■□□□ 1.36
PSPC1-201ENST00000338910 MRE11P49959 708 aa23.52■■□□□ 1.36
PSPC1-201ENST00000338910 ALDH1L2Q3SY69 923 aa23.52■■□□□ 1.36
PSPC1-201ENST00000338910 HSPA2P54652 639 aa23.51■■□□□ 1.35
PSPC1-201ENST00000338910 GLIPR1L2Q4G1C9 344 aa23.51■■□□□ 1.35
PSPC1-201ENST00000338910 CFAP44Q96MT7 982 aa23.51■■□□□ 1.35
PSPC1-201ENST00000338910 IPO8O15397 1037 aaKnown RBP23.51■■□□□ 1.35
PSPC1-201ENST00000338910 KIF16BQ96L93 1317 aa23.5■■□□□ 1.35
PSPC1-201ENST00000338910 MARF1Q9Y4F3 1742 aaKnown RBP23.5■■□□□ 1.35
PSPC1-201ENST00000338910 TMEM57Q8N5G2 664 aa23.49■■□□□ 1.35
PSPC1-201ENST00000338910 FOXO3O43524 673 aa23.49■■□□□ 1.35
PSPC1-201ENST00000338910 C22orf23Q9BZE7 217 aa23.49■■□□□ 1.35
PSPC1-201ENST00000338910 DLG5Q8TDM6 1919 aa23.49■■□□□ 1.35
PSPC1-201ENST00000338910 C8orf58Q8NAV2 365 aa23.48■■□□□ 1.35
PSPC1-201ENST00000338910 XPCQ01831 940 aaPredicted RBP23.47■■□□□ 1.35
PSPC1-201ENST00000338910 MCM10Q7L590 875 aa23.47■■□□□ 1.35
PSPC1-201ENST00000338910 ZNF428Q96B54 188 aa23.47■■□□□ 1.35
PSPC1-201ENST00000338910 DDX19BQ9UMR2 479 aa23.47■■□□□ 1.35
PSPC1-201ENST00000338910 RGPD1P0DJD0 1748 aa23.47■■□□□ 1.35
PSPC1-201ENST00000338910 TWISTNBQ3B726 338 aaPredicted RBP23.46■■□□□ 1.35
PSPC1-201ENST00000338910 HOXC9P31274 260 aa23.45■■□□□ 1.35
PSPC1-201ENST00000338910 C19orf44Q9H6X5 657 aa23.45■■□□□ 1.35
PSPC1-201ENST00000338910 RRP9O43818 475 aaKnown RBP23.45■■□□□ 1.34
PSPC1-201ENST00000338910 EYA1Q99502 592 aa23.45■■□□□ 1.34
PSPC1-201ENST00000338910 ISY1Q9ULR0 285 aaKnown RBP23.45■■□□□ 1.34
PSPC1-201ENST00000338910 HSP90AA1P07900 732 aaKnown RBP23.44■■□□□ 1.34
PSPC1-201ENST00000338910 GRPEL1Q9HAV7 217 aa23.44■■□□□ 1.34
PSPC1-201ENST00000338910 DDX11L8A8MPP1 907 aa23.44■■□□□ 1.34
PSPC1-201ENST00000338910 MRPL50Q8N5N7 158 aaKnown RBP23.44■■□□□ 1.34
PSPC1-201ENST00000338910 ARHGEF10O15013 1369 aa23.43■■□□□ 1.34
PSPC1-201ENST00000338910 USP54Q70EL1 1684 aa23.43■■□□□ 1.34
PSPC1-201ENST00000338910 HSP90AA2PQ14568 343 aaPredicted RBP23.43■■□□□ 1.34
PSPC1-201ENST00000338910 MFAP1P55081 439 aaKnown RBP23.42■■□□□ 1.34
PSPC1-201ENST00000338910 BRPF1P55201 1214 aaPredicted RBP23.42■■□□□ 1.34
PSPC1-201ENST00000338910 PKNOX2Q96KN3 472 aa23.42■■□□□ 1.34
PSPC1-201ENST00000338910 NCOA3Q9Y6Q9 1424 aa23.42■■□□□ 1.34
PSPC1-201ENST00000338910 ESPNB1AK53 854 aa23.41■■□□□ 1.34
PSPC1-201ENST00000338910 LTV1Q96GA3 475 aaPredicted RBP23.41■■□□□ 1.34
PSPC1-201ENST00000338910 TMEM94Q12767 1356 aa23.41■■□□□ 1.34
PSPC1-201ENST00000338910 IGSF1Q8N6C5 1336 aa23.4■■□□□ 1.34
PSPC1-201ENST00000338910 KDM4FA0A1W2PPD8 638 aa23.4■■□□□ 1.34
PSPC1-201ENST00000338910 PLEKHG5O94827 1062 aa23.4■■□□□ 1.34
PSPC1-201ENST00000338910 DDIT3P35638 169 aa23.4■■□□□ 1.34
PSPC1-201ENST00000338910 MTHFSDQ2M296 383 aaKnown RBP23.4■■□□□ 1.34
PSPC1-201ENST00000338910 ZBTB40Q9NUA8 1239 aa23.4■■□□□ 1.34
PSPC1-201ENST00000338910 KIF24Q5T7B8 1368 aa23.4■■□□□ 1.34
PSPC1-201ENST00000338910 KDRP35968 1356 aa23.39■■□□□ 1.34
PSPC1-201ENST00000338910 KRT24Q2M2I5 525 aa23.39■■□□□ 1.34
PSPC1-201ENST00000338910 ERBB4Q15303 1308 aa23.39■■□□□ 1.33
PSPC1-201ENST00000338910 STRCP1A6NGW2 1772 aa23.39■■□□□ 1.33
PSPC1-201ENST00000338910 C1orf167Q5SNV9 1468 aa23.39■■□□□ 1.33
PSPC1-201ENST00000338910 LMOD2Q6P5Q4 547 aa23.39■■□□□ 1.33
PSPC1-201ENST00000338910 HSCBQ8IWL3 235 aa23.38■■□□□ 1.33
PSPC1-201ENST00000338910 CHL1O00533 1208 aa23.38■■□□□ 1.33
PSPC1-201ENST00000338910 ATF3P18847 181 aa23.37■■□□□ 1.33
PSPC1-201ENST00000338910 ARHGAP45Q92619 1136 aa23.37■■□□□ 1.33
PSPC1-201ENST00000338910 MIS18AQ9NYP9 233 aa23.37■■□□□ 1.33
PSPC1-201ENST00000338910 ZBTB7CA1YPR0 619 aa23.36■■□□□ 1.33
PSPC1-201ENST00000338910 HDAC1Q13547 482 aaPredicted RBP23.35■■□□□ 1.33
PSPC1-201ENST00000338910 KRT28Q7Z3Y7 464 aa23.35■■□□□ 1.33
PSPC1-201ENST00000338910 KCNH5Q8NCM2 988 aa23.35■■□□□ 1.33
PSPC1-201ENST00000338910 RTF1Q92541 710 aaKnown RBP23.35■■□□□ 1.33
PSPC1-201ENST00000338910 LTN1O94822 1766 aa23.35■■□□□ 1.33
PSPC1-201ENST00000338910 NFAT5O94916 1531 aa23.35■■□□□ 1.33
PSPC1-201ENST00000338910 VSIG10Q8N0Z9 540 aa23.34■■□□□ 1.33
PSPC1-201ENST00000338910 IP6K1Q92551 441 aa23.34■■□□□ 1.33
PSPC1-201ENST00000338910 RTL1A6NKG5 1358 aa23.32■■□□□ 1.32
PSPC1-201ENST00000338910 GCP02774 474 aa23.32■■□□□ 1.32
PSPC1-201ENST00000338910 ZBTB7BO15156 539 aaPredicted RBP23.32■■□□□ 1.32
PSPC1-201ENST00000338910 SNX21Q969T3 373 aa23.32■■□□□ 1.32
PSPC1-201ENST00000338910 RBM25P49756 843 aaKnown RBP23.31■■□□□ 1.32
PSPC1-201ENST00000338910 USHBP1Q8N6Y0 703 aa23.31■■□□□ 1.32
PSPC1-201ENST00000338910 ZMYND15Q9H091 742 aa23.31■■□□□ 1.32
PSPC1-201ENST00000338910 GAS2L3Q86XJ1 694 aa23.31■■□□□ 1.32
PSPC1-201ENST00000338910 DDX17Q92841 729 aaKnown RBP23.31■■□□□ 1.32
PSPC1-201ENST00000338910 MST1RQ04912 1400 aa23.31■■□□□ 1.32
PSPC1-201ENST00000338910 CRB1P82279 1406 aa23.3■■□□□ 1.32
PSPC1-201ENST00000338910 SMC5Q8IY18 1101 aa23.3■■□□□ 1.32
PSPC1-201ENST00000338910 GAS2L2Q8NHY3 880 aa23.3■■□□□ 1.32
PSPC1-201ENST00000338910 TNPO1Q92973 898 aaKnown RBP23.3■■□□□ 1.32
PSPC1-201ENST00000338910 LMTK3Q96Q04 1460 aa23.3■■□□□ 1.32
PSPC1-201ENST00000338910 CIZ1Q9ULV3 898 aaPredicted RBP23.29■■□□□ 1.32
PSPC1-201ENST00000338910 C1orf115Q9H7X2 142 aa23.29■■□□□ 1.32
PSPC1-201ENST00000338910 TRIM44Q96DX7 344 aaPredicted RBP23.28■■□□□ 1.32
PSPC1-201ENST00000338910 API5Q9BZZ5 524 aaKnown RBP23.28■■□□□ 1.32
PSPC1-201ENST00000338910 ABCC4O15439 1325 aa23.28■■□□□ 1.32
PSPC1-201ENST00000338910 KIF1AQ12756 1690 aa23.28■■□□□ 1.32
PSPC1-201ENST00000338910 TSPYL4Q9UJ04 414 aa23.28■■□□□ 1.32
PSPC1-201ENST00000338910 TRPM3Q9HCF6 1732 aaPredicted RBP23.27■■□□□ 1.32
PSPC1-201ENST00000338910 NBPF6Q5VWK0 638 aa23.27■■□□□ 1.31
PSPC1-201ENST00000338910 CADPS2Q86UW7 1296 aa23.27■■□□□ 1.31
PSPC1-201ENST00000338910 NBPF4Q96M43 638 aa23.27■■□□□ 1.31
PSPC1-201ENST00000338910 DCCP43146 1447 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms