RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	KNS1	P32350	737 aa	Predicted RBP	4.11	□□□□□ -1.75
LCB4	YOR171C	MRPS18	P42847	217 aa		4.11	□□□□□ -1.75
LCB4	YOR171C	LSB6	P42951	607 aa		4.11	□□□□□ -1.75
LCB4	YOR171C	YNR065C	P53751	1116 aa		4.11	□□□□□ -1.75
LCB4	YOR171C	VPS16	Q03308	798 aa		4.11	□□□□□ -1.75
LCB4	YOR171C	HPF1	Q05164	967 aa		4.11	□□□□□ -1.75
LCB4	YOR171C	BUD21	Q08492	214 aa	Predicted RBP	4.11	□□□□□ -1.75
LCB4	YOR171C	TOA1	P32773	286 aa		4.1	□□□□□ -1.75
LCB4	YOR171C	PET112	P33893	541 aa		4.1	□□□□□ -1.75
LCB4	YOR171C	CWC22	P53333	577 aa	Known RBP	4.1	□□□□□ -1.75
LCB4	YOR171C	HEM13	P11353	328 aa	Known RBP	4.09	□□□□□ -1.75
LCB4	YOR171C	NAR1	P23503	491 aa	Known RBP	4.09	□□□□□ -1.75
LCB4	YOR171C	FET4	P40988	552 aa		4.09	□□□□□ -1.75
LCB4	YOR171C	RSM26	P47141	266 aa		4.09	□□□□□ -1.75
LCB4	YOR171C	HAS1	Q03532	505 aa	Known RBP	4.09	□□□□□ -1.75
LCB4	YOR171C	GIS4	Q04233	774 aa		4.09	□□□□□ -1.75
LCB4	YOR171C	PIN2	Q12057	282 aa		4.09	□□□□□ -1.75
LCB4	YOR171C	GUP1	P53154	560 aa		4.09	□□□□□ -1.76
LCB4	YOR171C	SOK2	P53438	785 aa	Predicted RBP	4.09	□□□□□ -1.76
LCB4	YOR171C	ALD6	P54115	500 aa	Known RBP	4.09	□□□□□ -1.76
LCB4	YOR171C	NOG1	Q02892	647 aa	Known RBP	4.09	□□□□□ -1.76
LCB4	YOR171C	DPH6	Q12429	685 aa		4.09	□□□□□ -1.76
LCB4	YOR171C	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-DR6	P0CX70	440 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-ER1	P0CX71	440 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-LR2	P0CX72	440 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-PL	P0CX73	440 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-JR1	P0CX74	440 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-LR3	P0CX75	440 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-ML2	P0CX76	440 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	DUT1	P33317	147 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	SQT1	P35184	431 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	MNR2	P35724	969 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	PEX28	P38848	579 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
LCB4	YOR171C	TY1A-GR1	Q12085	440 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	HIF1	Q12373	385 aa		4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.08	□□□□□ -1.76
LCB4	YOR171C	TY1A-OL	Q92392	440 aa	Known RBP	4.08	□□□□□ -1.76
LCB4	YOR171C	GCR1	P07261	785 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	HTS1	P07263	546 aa	Known RBP	4.07	□□□□□ -1.76
LCB4	YOR171C	SEC23	P15303	768 aa	Known RBP	4.07	□□□□□ -1.76
LCB4	YOR171C	CLN2	P20438	545 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	MSH3	P25336	1018 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	EXO5	P38289	585 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	VAC8	P39968	578 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	NEO1	P40527	1151 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	MAD1	P40957	749 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	XKS1	P42826	600 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	GNP1	P48813	663 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	YGL140C	P53120	1219 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	PGM2	P37012	569 aa	Known RBP	4.07	□□□□□ -1.76
LCB4	YOR171C	ALG14	P38242	237 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	OCA5	P38738	679 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	GIP2	P40036	548 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	TED1	P40533	473 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	PEX13	P80667	386 aa		4.07	□□□□□ -1.76
LCB4	YOR171C	CDC34	P14682	295 aa		4.06	□□□□□ -1.76
LCB4	YOR171C	PAN5	P38787	379 aa		4.06	□□□□□ -1.76
LCB4	YOR171C	LEM3	P42838	414 aa		4.06	□□□□□ -1.76
LCB4	YOR171C	ZDS1	P50111	915 aa	Known RBP	4.06	□□□□□ -1.76
LCB4	YOR171C	YIG1	Q08956	461 aa		4.06	□□□□□ -1.76
LCB4	YOR171C	SLP1	Q12232	587 aa		4.06	□□□□□ -1.76
LCB4	YOR171C	RDH54	P38086	958 aa		4.05	□□□□□ -1.76
LCB4	YOR171C	SHU2	P38957	223 aa		4.05	□□□□□ -1.76
LCB4	YOR171C	FAA4	P47912	694 aa	Known RBP	4.05	□□□□□ -1.76
LCB4	YOR171C	MRL1	Q06815	381 aa		4.05	□□□□□ -1.76
LCB4	YOR171C	REC8	Q12188	680 aa		4.05	□□□□□ -1.76
LCB4	YOR171C	NEM1	P38757	446 aa		4.05	□□□□□ -1.76
LCB4	YOR171C	KIP3	P53086	805 aa	Known RBP	4.05	□□□□□ -1.76
LCB4	YOR171C	SPO71	Q03868	1245 aa		4.05	□□□□□ -1.76
LCB4	YOR171C	HDA2	Q06629	674 aa		4.05	□□□□□ -1.76
LCB4	YOR171C	YKL077W	P36081	392 aa		4.04	□□□□□ -1.76
LCB4	YOR171C	HXT13	P39924	564 aa		4.04	□□□□□ -1.76
LCB4	YOR171C	POL5	P39985	1022 aa	Known RBP	4.04	□□□□□ -1.76
LCB4	YOR171C	UTP22	P53254	1237 aa	Predicted RBP	4.04	□□□□□ -1.76
LCB4	YOR171C	HXT17	P53631	564 aa		4.04	□□□□□ -1.76
LCB4	YOR171C	HXT15	P54854	567 aa		4.04	□□□□□ -1.76
LCB4	YOR171C	RTT10	Q08924	1013 aa		4.04	□□□□□ -1.76
LCB4	YOR171C	SLS1	P42900	643 aa		4.03	□□□□□ -1.76
LCB4	YOR171C	GDE1	Q02979	1223 aa		4.03	□□□□□ -1.76
LCB4	YOR171C	UBX5	Q06682	500 aa		4.03	□□□□□ -1.76
LCB4	YOR171C	RLP24	Q07915	199 aa	Known RBP	4.03	□□□□□ -1.76
LCB4	YOR171C	NHA1	Q99271	985 aa		4.03	□□□□□ -1.76
LCB4	YOR171C	TY4B-P	A0A0B7P3V8	1104 aa		4.03	□□□□□ -1.77
LCB4	YOR171C	TAF13	P11747	167 aa		4.03	□□□□□ -1.77
LCB4	YOR171C	VMA4	P22203	233 aa	Known RBP	4.03	□□□□□ -1.77
LCB4	YOR171C	SBE2	P42223	864 aa	Known RBP	4.03	□□□□□ -1.77
LCB4	YOR171C	GCV1	P48015	400 aa		4.03	□□□□□ -1.77
LCB4	YOR171C	CWC24	P53769	259 aa		4.03	□□□□□ -1.77
LCB4	YOR171C	SIW14	P53965	281 aa		4.03	□□□□□ -1.77
LCB4	YOR171C	EEB1	Q02891	456 aa		4.03	□□□□□ -1.77
LCB4	YOR171C	UTP5	Q04177	643 aa	Known RBP	4.03	□□□□□ -1.77
LCB4	YOR171C	SSF2	Q12153	453 aa	Predicted RBP	4.03	□□□□□ -1.77
LCB4	YOR171C	TY4A-H	Q6Q5P6	413 aa		4.03	□□□□□ -1.77
LCB4	YOR171C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.02	□□□□□ -1.77	not detected
LCB4	YOR171C	ERS1	P17261	260 aa		4.02	□□□□□ -1.77
LCB4	YOR171C	TOM20	P35180	183 aa		4.02	□□□□□ -1.77
LCB4	YOR171C	YGR053C	P53234	283 aa		4.02	□□□□□ -1.77
LCB4	YOR171C	MEC3	Q02574	474 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms