RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeastyeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC42YLR229C SSN3P39073 555 aa5.34□□□□□ -1.55
CDC42YLR229C YFR016CP43597 1233 aaKnown RBP5.34□□□□□ -1.55
CDC42YLR229C VTC4P47075 721 aa5.34□□□□□ -1.55
CDC42YLR229C YJR098CP47139 656 aa5.34□□□□□ -1.55
CDC42YLR229C SUT1P53032 299 aaKnown RBP5.34□□□□□ -1.55
CDC42YLR229C SEN54Q02825 467 aaPredicted RBP5.34□□□□□ -1.55
CDC42YLR229C MSC6Q08818 692 aaKnown RBP5.34□□□□□ -1.55
CDC42YLR229C RPP1AP05318 106 aaPredicted RBP5.33□□□□□ -1.56
CDC42YLR229C RAD2P07276 1031 aa5.33□□□□□ -1.56
CDC42YLR229C IRE1P32361 1115 aa5.33□□□□□ -1.56
CDC42YLR229C AKL1P38080 1108 aaKnown RBP5.33□□□□□ -1.56
CDC42YLR229C HXT5P38695 592 aa5.33□□□□□ -1.56
CDC42YLR229C PPX1P38698 397 aa5.33□□□□□ -1.56
CDC42YLR229C MTO1P53070 669 aa5.33□□□□□ -1.56
CDC42YLR229C HEF3P53978 1044 aaKnown RBP5.33□□□□□ -1.56
CDC42YLR229C TCB1Q12466 1186 aa5.33□□□□□ -1.56
CDC42YLR229C SMC1P32908 1225 aa5.32□□□□□ -1.56
CDC42YLR229C MDJ2P42834 146 aa5.32□□□□□ -1.56
CDC42YLR229C RTT109Q07794 436 aa5.32□□□□□ -1.56
CDC42YLR229C SIR4P11978 1358 aa5.31□□□□□ -1.56
CDC42YLR229C QCR6P00127 147 aa5.31□□□□□ -1.56
CDC42YLR229C PRP5P21372 849 aaPredicted RBP5.31□□□□□ -1.56
CDC42YLR229C VMA3P25515 160 aa5.31□□□□□ -1.56
CDC42YLR229C PRP45P28004 379 aaPredicted RBP5.31□□□□□ -1.56
CDC42YLR229C SNF7P39929 240 aaKnown RBP5.31□□□□□ -1.56
CDC42YLR229C YIR014WP40570 242 aa5.31□□□□□ -1.56
CDC42YLR229C HXT8P40886 569 aa5.31□□□□□ -1.56
CDC42YLR229C BUD27P43573 796 aaKnown RBP RIP-Chip data5.31□□□□□ -1.56not detected
CDC42YLR229C DSD1P53095 428 aa5.31□□□□□ -1.56
CDC42YLR229C SNU71P53207 620 aaKnown RBP5.31□□□□□ -1.56
CDC42YLR229C TRS120Q04183 1289 aa5.31□□□□□ -1.56
CDC42YLR229C DAL5P15365 543 aa5.3□□□□□ -1.56
CDC42YLR229C OPY1P38271 328 aa5.3□□□□□ -1.56
CDC42YLR229C MGE1P38523 228 aa5.3□□□□□ -1.56
CDC42YLR229C QDR2P40474 542 aa5.3□□□□□ -1.56
CDC42YLR229C YIL092WP40497 633 aa5.3□□□□□ -1.56
CDC42YLR229C UBP15P50101 1230 aa5.3□□□□□ -1.56
CDC42YLR229C SCW11P53189 542 aa5.3□□□□□ -1.56
CDC42YLR229C YNL050CP53952 270 aa5.3□□□□□ -1.56
CDC42YLR229C NUT2Q06213 157 aa5.3□□□□□ -1.56
CDC42YLR229C YRF1-4O13559 1382 aa5.29□□□□□ -1.56
CDC42YLR229C RPB10P22139 70 aa5.29□□□□□ -1.56
CDC42YLR229C KAP122P32767 1081 aa5.29□□□□□ -1.56
CDC42YLR229C YNL165WP53891 406 aa5.29□□□□□ -1.56
CDC42YLR229C SLM3Q12093 417 aa5.29□□□□□ -1.56
CDC42YLR229C TY4B-HP0C2J7 1802 aa5.29□□□□□ -1.56
CDC42YLR229C TY4B-JP47024 1803 aa5.29□□□□□ -1.56
CDC42YLR229C APC1P53886 1748 aa5.28□□□□□ -1.56
CDC42YLR229C YRF1-2P40105 1681 aa5.28□□□□□ -1.56
CDC42YLR229C PDC6P26263 563 aaKnown RBP5.28□□□□□ -1.56
CDC42YLR229C HSP104P31539 908 aaKnown RBP5.28□□□□□ -1.56
CDC42YLR229C GCD6P32501 712 aaKnown RBP5.28□□□□□ -1.56
CDC42YLR229C BOI1P38041 980 aaKnown RBP5.28□□□□□ -1.56
CDC42YLR229C ISW1P38144 1129 aa5.28□□□□□ -1.56
CDC42YLR229C MAM1P40065 302 aa5.28□□□□□ -1.56
CDC42YLR229C POL32P47110 350 aa5.28□□□□□ -1.56
CDC42YLR229C GYP7P48365 746 aa5.28□□□□□ -1.56
CDC42YLR229C ZDS1P50111 915 aaKnown RBP5.28□□□□□ -1.56
CDC42YLR229C CTF4Q01454 927 aa5.28□□□□□ -1.56
CDC42YLR229C OPT2Q06593 877 aa5.28□□□□□ -1.56
CDC42YLR229C AOS1Q06624 347 aa5.28□□□□□ -1.56
CDC42YLR229C APC11Q12157 165 aa5.28□□□□□ -1.56
CDC42YLR229C RRT14P40470 206 aa5.27□□□□□ -1.57
CDC42YLR229C FRT1Q99332 602 aa5.27□□□□□ -1.57
CDC42YLR229C SLA1P32790 1244 aa5.26□□□□□ -1.57
CDC42YLR229C SHM1P37292 490 aaPredicted RBP5.26□□□□□ -1.57
CDC42YLR229C GLY1P37303 387 aaKnown RBP5.26□□□□□ -1.57
CDC42YLR229C GIP1P38229 639 aa5.26□□□□□ -1.57
CDC42YLR229C RAD55P38953 406 aa5.26□□□□□ -1.57
CDC42YLR229C XKS1P42826 600 aa5.26□□□□□ -1.57
CDC42YLR229C YDR444WQ04093 687 aa5.26□□□□□ -1.57
CDC42YLR229C PSH1Q12161 406 aa5.26□□□□□ -1.57
CDC42YLR229C RRP5Q05022 1729 aaKnown RBP5.26□□□□□ -1.57
CDC42YLR229C VPS24P36095 224 aaKnown RBP5.25□□□□□ -1.57
CDC42YLR229C ECM2P38241 364 aaKnown RBP5.25□□□□□ -1.57
CDC42YLR229C SAM37P50110 327 aa5.25□□□□□ -1.57
CDC42YLR229C YNL011CP53980 444 aa5.25□□□□□ -1.57
CDC42YLR229C SRC1Q03707 834 aa5.25□□□□□ -1.57
CDC42YLR229C TY1A-DR3Q12441 440 aa5.25□□□□□ -1.57
CDC42YLR229C EDE1P34216 1381 aa5.25□□□□□ -1.57
CDC42YLR229C YIL177CP40434 1758 aa5.24□□□□□ -1.57
CDC42YLR229C YJL225CP40889 1758 aa5.24□□□□□ -1.57
CDC42YLR229C ROX1P25042 368 aa5.24□□□□□ -1.57
CDC42YLR229C NCL1P38205 684 aaKnown RBP5.24□□□□□ -1.57
CDC42YLR229C OSH7P38755 437 aa5.24□□□□□ -1.57
CDC42YLR229C SRT1Q03175 343 aa5.24□□□□□ -1.57
CDC42YLR229C NSE3Q05541 303 aa5.24□□□□□ -1.57
CDC42YLR229C YOR296WQ08748 1289 aa5.24□□□□□ -1.57
CDC42YLR229C BMS1Q08965 1183 aaKnown RBP5.24□□□□□ -1.57
CDC42YLR229C WHI5Q12416 295 aa5.24□□□□□ -1.57
CDC42YLR229C STB3Q12427 513 aa5.24□□□□□ -1.57
CDC42YLR229C RPS31P05759 152 aaKnown RBP5.23□□□□□ -1.57
CDC42YLR229C LEU1P07264 779 aaKnown RBP5.23□□□□□ -1.57
CDC42YLR229C RGP1P16664 663 aa5.23□□□□□ -1.57
CDC42YLR229C MSN1P22148 382 aa5.23□□□□□ -1.57
CDC42YLR229C KCC4P25389 1037 aa5.23□□□□□ -1.57
CDC42YLR229C GBP2P25555 427 aaKnown RBP RIP-Chip data5.23□□□□□ -1.57not detected
CDC42YLR229C CIC1P38779 376 aaKnown RBP5.23□□□□□ -1.57
CDC42YLR229C CDC55Q00362 526 aa5.23□□□□□ -1.57
CDC42YLR229C CUS1Q02554 436 aaPredicted RBP5.23□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms