RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC40	YDR364C	RRN6	P32786	894 aa		4.97	□□□□□ -1.61
CDC40	YDR364C	OYE3	P41816	400 aa	Predicted RBP	4.97	□□□□□ -1.61
CDC40	YDR364C	SUT1	P53032	299 aa	Known RBP	4.97	□□□□□ -1.61
CDC40	YDR364C	YML020W	Q03722	664 aa		4.97	□□□□□ -1.61
CDC40	YDR364C	MYO2	P19524	1574 aa	Known RBP	4.97	□□□□□ -1.61
CDC40	YDR364C	PEP1	P32319	1579 aa		4.97	□□□□□ -1.61
CDC40	YDR364C	SMC1	P32908	1225 aa		4.96	□□□□□ -1.62
CDC40	YDR364C	GIP4	P39732	760 aa		4.96	□□□□□ -1.62
CDC40	YDR364C	DOT1	Q04089	582 aa	Known RBP	4.96	□□□□□ -1.62
CDC40	YDR364C	YMR074C	Q04773	145 aa		4.96	□□□□□ -1.62
CDC40	YDR364C	LSO1	Q3E827	93 aa		4.96	□□□□□ -1.62
CDC40	YDR364C	YPK9	Q12697	1472 aa		4.95	□□□□□ -1.62
CDC40	YDR364C	PNP1	Q05788	311 aa		4.95	□□□□□ -1.62
CDC40	YDR364C	AIM44	Q99299	758 aa		4.95	□□□□□ -1.62
CDC40	YDR364C	ESP1	Q03018	1630 aa		4.95	□□□□□ -1.62
CDC40	YDR364C	GCV1	P48015	400 aa		4.94	□□□□□ -1.62
CDC40	YDR364C	SSA1	P10591	642 aa	Known RBP	4.93	□□□□□ -1.62
CDC40	YDR364C	ADP1	P25371	1049 aa		4.93	□□□□□ -1.62
CDC40	YDR364C	HDA2	Q06629	674 aa		4.93	□□□□□ -1.62
CDC40	YDR364C	RPS4A	P0CX35	261 aa	Known RBP	4.92	□□□□□ -1.62
CDC40	YDR364C	RPS4B	P0CX36	261 aa	Known RBP	4.92	□□□□□ -1.62
CDC40	YDR364C	PRP6	P19735	899 aa	Predicted RBP	4.92	□□□□□ -1.62
CDC40	YDR364C	RPB10	P22139	70 aa		4.91	□□□□□ -1.62
CDC40	YDR364C	GEF1	P37020	779 aa		4.91	□□□□□ -1.62
CDC40	YDR364C	CTR9	P89105	1077 aa		4.91	□□□□□ -1.62
CDC40	YDR364C	YIG1	Q08956	461 aa		4.91	□□□□□ -1.62
CDC40	YDR364C	POL1	P13382	1468 aa		4.91	□□□□□ -1.62
CDC40	YDR364C	SCC2	Q04002	1493 aa		4.91	□□□□□ -1.62
CDC40	YDR364C	FLR1	P38124	548 aa		4.9	□□□□□ -1.63
CDC40	YDR364C	ALT1	P52893	592 aa		4.9	□□□□□ -1.63
CDC40	YDR364C	MEC3	Q02574	474 aa		4.9	□□□□□ -1.63
CDC40	YDR364C	TRE1	Q08919	783 aa		4.9	□□□□□ -1.63
CDC40	YDR364C	UFD4	P33202	1483 aa		4.89	□□□□□ -1.63
CDC40	YDR364C	HTS1	P07263	546 aa	Known RBP	4.89	□□□□□ -1.63
CDC40	YDR364C	PRP5	P21372	849 aa	Predicted RBP	4.89	□□□□□ -1.63
CDC40	YDR364C	RIM11	P38615	370 aa		4.89	□□□□□ -1.63
CDC40	YDR364C	PEX7	P39108	375 aa		4.89	□□□□□ -1.63
CDC40	YDR364C	MSH4	P40965	878 aa	Predicted RBP	4.89	□□□□□ -1.63
CDC40	YDR364C	SSY1	Q03770	852 aa		4.89	□□□□□ -1.63
CDC40	YDR364C	YML083C	Q04526	418 aa		4.89	□□□□□ -1.63
CDC40	YDR364C	SUB2	Q07478	446 aa	Known RBP	4.89	□□□□□ -1.63
CDC40	YDR364C	LPX1	Q12405	387 aa	Known RBP	4.89	□□□□□ -1.63
CDC40	YDR364C	RPO31	P04051	1460 aa		4.88	□□□□□ -1.63
CDC40	YDR364C	NPR1	P22211	790 aa		4.88	□□□□□ -1.63
CDC40	YDR364C	MSH6	Q03834	1242 aa		4.88	□□□□□ -1.63
CDC40	YDR364C	YVC1	Q12324	675 aa		4.88	□□□□□ -1.63
CDC40	YDR364C	STU1	P38198	1513 aa		4.87	□□□□□ -1.63
CDC40	YDR364C	EAR1	Q03212	550 aa		4.87	□□□□□ -1.63
CDC40	YDR364C	NOP8	Q08287	484 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC40	YDR364C	NOB1	Q08444	459 aa	Known RBP	4.86	□□□□□ -1.63
CDC40	YDR364C	CMR1	Q12510	522 aa	Known RBP	4.86	□□□□□ -1.63
CDC40	YDR364C	COB	P00163	385 aa		4.85	□□□□□ -1.63
CDC40	YDR364C	SSA4	P22202	642 aa	Known RBP	4.85	□□□□□ -1.63
CDC40	YDR364C	TOP2	P06786	1428 aa	Known RBP	4.85	□□□□□ -1.63
CDC40	YDR364C	YOR1	P53049	1477 aa		4.84	□□□□□ -1.63
CDC40	YDR364C	REI1	P38344	393 aa	Predicted RBP	4.84	□□□□□ -1.63
CDC40	YDR364C	RIM8	P53179	542 aa		4.84	□□□□□ -1.63
CDC40	YDR364C	UTP22	P53254	1237 aa	Predicted RBP	4.84	□□□□□ -1.63
CDC40	YDR364C	RSC4	Q02206	625 aa		4.84	□□□□□ -1.63
CDC40	YDR364C	BPT1	P14772	1559 aa		4.83	□□□□□ -1.64
CDC40	YDR364C	RKR1	Q04781	1562 aa		4.83	□□□□□ -1.64
CDC40	YDR364C	FUR4	P05316	633 aa	Known RBP	4.83	□□□□□ -1.64
CDC40	YDR364C	PRO1	P32264	428 aa		4.83	□□□□□ -1.64
CDC40	YDR364C	DUR3	P33413	735 aa		4.83	□□□□□ -1.64
CDC40	YDR364C	AIM3	P38266	947 aa	Known RBP	4.83	□□□□□ -1.64
CDC40	YDR364C	MRPL22	P53881	309 aa		4.83	□□□□□ -1.64
CDC40	YDR364C	RPL34A	P87262	121 aa	Predicted RBP	4.83	□□□□□ -1.64
CDC40	YDR364C	YCF1	P39109	1515 aa	Known RBP	4.83	□□□□□ -1.64
CDC40	YDR364C	YTA7	P40340	1379 aa		4.82	□□□□□ -1.64
CDC40	YDR364C	NFS1	P25374	497 aa		4.82	□□□□□ -1.64
CDC40	YDR364C	ALG6	Q12001	544 aa	Known RBP	4.82	□□□□□ -1.64
CDC40	YDR364C	SMC4	Q12267	1418 aa		4.82	□□□□□ -1.64
CDC40	YDR364C	SMY2	P32909	740 aa	Known RBP	4.81	□□□□□ -1.64
CDC40	YDR364C	SLD2	P34252	453 aa		4.81	□□□□□ -1.64
CDC40	YDR364C	NNK1	P36003	928 aa		4.81	□□□□□ -1.64
CDC40	YDR364C	BOL3	P39724	118 aa		4.81	□□□□□ -1.64
CDC40	YDR364C	YGR045C	P53229	120 aa		4.81	□□□□□ -1.64
CDC40	YDR364C	NOP7	P53261	605 aa	Known RBP	4.81	□□□□□ -1.64
CDC40	YDR364C	GSF2	Q04697	403 aa	Known RBP	4.81	□□□□□ -1.64
CDC40	YDR364C	ARL1	P38116	183 aa	Known RBP	4.8	□□□□□ -1.64
CDC40	YDR364C	ECM2	P38241	364 aa	Known RBP	4.8	□□□□□ -1.64
CDC40	YDR364C	PTC7	P38797	343 aa		4.8	□□□□□ -1.64
CDC40	YDR364C	YDL177C	Q12257	170 aa		4.8	□□□□□ -1.64
CDC40	YDR364C	CHD1	P32657	1468 aa		4.8	□□□□□ -1.64
CDC40	YDR364C	MMS22	Q06164	1454 aa		4.8	□□□□□ -1.64
CDC40	YDR364C	SOD2	P00447	233 aa		4.79	□□□□□ -1.64
CDC40	YDR364C	SAP155	P43612	1002 aa		4.79	□□□□□ -1.64
CDC40	YDR364C	MYO4	P32492	1471 aa		4.79	□□□□□ -1.64
CDC40	YDR364C	ELA1	P53861	379 aa	Predicted RBP	4.78	□□□□□ -1.64
CDC40	YDR364C	GTS1	P40956	396 aa		4.78	□□□□□ -1.64
CDC40	YDR364C	UFD2	P54860	961 aa		4.77	□□□□□ -1.65
CDC40	YDR364C	AVO1	Q08236	1176 aa		4.77	□□□□□ -1.65
CDC40	YDR364C	SPP41	P38904	1435 aa		4.76	□□□□□ -1.65
CDC40	YDR364C	PUS7	Q08647	676 aa	Known RBP	4.76	□□□□□ -1.65
CDC40	YDR364C	YPL277C	Q08989	487 aa		4.76	□□□□□ -1.65
CDC40	YDR364C	TOD6	P34219	525 aa		4.75	□□□□□ -1.65
CDC40	YDR364C	SNU71	P53207	620 aa	Known RBP	4.75	□□□□□ -1.65
CDC40	YDR364C	ORC1	P54784	914 aa	Predicted RBP	4.75	□□□□□ -1.65
CDC40	YDR364C	CDC25	P04821	1589 aa		4.74	□□□□□ -1.65
CDC40	YDR364C	CDC3	P32457	520 aa	Known RBP	4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms