RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W IOC2Q12072 812 aa2.6□□□□□ -1.99
SIR4YDR227W NOP53Q12080 455 aaKnown RBP2.6□□□□□ -1.99
SIR4YDR227W MMP1Q12372 583 aa2.6□□□□□ -1.99
SIR4YDR227W ENO2P00925 437 aaKnown RBP2.6□□□□□ -1.99
SIR4YDR227W NUP42P49686 430 aaKnown RBP2.6□□□□□ -1.99
SIR4YDR227W SKY1Q03656 742 aa2.6□□□□□ -1.99
SIR4YDR227W FAP7Q12055 197 aaPredicted RBP2.6□□□□□ -1.99
SIR4YDR227W STB3Q12427 513 aa2.6□□□□□ -1.99
SIR4YDR227W OCA5P38738 679 aa2.6□□□□□ -1.99
SIR4YDR227W CSM2P40465 213 aa2.6□□□□□ -1.99
SIR4YDR227W DAP1Q12091 152 aa2.6□□□□□ -1.99
SIR4YDR227W YLR278CQ05854 1341 aa2.6□□□□□ -1.99
SIR4YDR227W HOM3P10869 527 aa2.59□□□□□ -1.99
SIR4YDR227W TPD3P31383 635 aa2.59□□□□□ -1.99
SIR4YDR227W RTG1P32607 177 aa2.59□□□□□ -1.99
SIR4YDR227W MOT2P34909 587 aaKnown RBP2.59□□□□□ -1.99
SIR4YDR227W VPS27P40343 622 aaKnown RBP2.59□□□□□ -1.99
SIR4YDR227W SET4P42948 560 aa2.59□□□□□ -1.99
SIR4YDR227W RSC8P43609 557 aaKnown RBP2.59□□□□□ -1.99
SIR4YDR227W ATG16Q03818 150 aa2.59□□□□□ -1.99
SIR4YDR227W IRC3Q06683 689 aa2.59□□□□□ -1.99
SIR4YDR227W FAL1Q12099 399 aaKnown RBP2.59□□□□□ -1.99
SIR4YDR227W LYS2P07702 1392 aa2.59□□□□□ -1.99
SIR4YDR227W THS1P04801 734 aaKnown RBP2.59□□□□□ -1.99
SIR4YDR227W YKL133CP36066 463 aa2.59□□□□□ -1.99
SIR4YDR227W FMO1P38866 432 aa2.59□□□□□ -1.99
SIR4YDR227W IOC3P43596 787 aa2.59□□□□□ -1.99
SIR4YDR227W YJR120WP47157 116 aa2.59□□□□□ -1.99
SIR4YDR227W YGR125WP53273 1036 aa2.59□□□□□ -1.99
SIR4YDR227W SAM3Q08986 587 aa2.59□□□□□ -1.99
SIR4YDR227W OSH2Q12451 1283 aa2.59□□□□□ -1.99
SIR4YDR227W LDB19Q12502 818 aa2.59□□□□□ -1.99
SIR4YDR227W GSC2P40989 1895 aa2.59□□□□□ -1.99
SIR4YDR227W TUS1Q06412 1307 aa2.59□□□□□ -1.99
SIR4YDR227W TY4B-PA0A0B7P3V8 1104 aa2.59□□□□□ -2
SIR4YDR227W SPT2P06843 333 aaPredicted RBP2.59□□□□□ -2
SIR4YDR227W SLY41P22215 453 aa2.59□□□□□ -2
SIR4YDR227W STE5P32917 917 aa2.59□□□□□ -2
SIR4YDR227W PXA2P34230 853 aa2.59□□□□□ -2
SIR4YDR227W PTC4P38089 393 aa2.59□□□□□ -2
SIR4YDR227W RTG3P38165 486 aa2.59□□□□□ -2
SIR4YDR227W PRE3P38624 215 aa2.59□□□□□ -2
SIR4YDR227W NPR2P39923 615 aa2.59□□□□□ -2
SIR4YDR227W MXR1P40029 184 aa2.59□□□□□ -2
SIR4YDR227W CIT3P43635 486 aa2.59□□□□□ -2
SIR4YDR227W PIB2P53191 635 aa2.59□□□□□ -2
SIR4YDR227W TY4A-HQ6Q5P6 413 aa2.59□□□□□ -2
SIR4YDR227W CUP1-1P0CX80 61 aa2.58□□□□□ -2
SIR4YDR227W CUP1-2P0CX81 61 aa2.58□□□□□ -2
SIR4YDR227W ARE1P25628 610 aa2.58□□□□□ -2
SIR4YDR227W RAD54P32863 898 aa2.58□□□□□ -2
SIR4YDR227W TOS1P38288 455 aa2.58□□□□□ -2
SIR4YDR227W SLN1P39928 1220 aaPredicted RBP2.58□□□□□ -2
SIR4YDR227W YPL034WQ03083 165 aa2.58□□□□□ -2
SIR4YDR227W PRP45P28004 379 aaPredicted RBP2.58□□□□□ -2
SIR4YDR227W UBS1P38290 277 aa2.58□□□□□ -2
SIR4YDR227W SUT1P53032 299 aaKnown RBP2.58□□□□□ -2
SIR4YDR227W SEN54Q02825 467 aaPredicted RBP2.58□□□□□ -2
SIR4YDR227W SPO20Q04359 397 aa2.58□□□□□ -2
SIR4YDR227W BRE1Q07457 700 aaKnown RBP2.58□□□□□ -2
SIR4YDR227W PSK2Q08217 1101 aa2.58□□□□□ -2
SIR4YDR227W PDI1P17967 522 aaKnown RBP2.58□□□□□ -2
SIR4YDR227W MSH2P25847 964 aa2.58□□□□□ -2
SIR4YDR227W SFB3P38810 929 aa2.58□□□□□ -2
SIR4YDR227W HIR1P32479 840 aa2.58□□□□□ -2
SIR4YDR227W CCT3P39077 534 aaKnown RBP2.58□□□□□ -2
SIR4YDR227W MMF1P40185 145 aaKnown RBP2.58□□□□□ -2
SIR4YDR227W DOT5P40553 215 aa2.58□□□□□ -2
SIR4YDR227W ROG3P43602 733 aa2.58□□□□□ -2
SIR4YDR227W KEL2P50090 882 aa2.58□□□□□ -2
SIR4YDR227W LIF1P53150 421 aa2.58□□□□□ -2
SIR4YDR227W SGT2Q12118 346 aaKnown RBP2.58□□□□□ -2
SIR4YDR227W SPS1P08458 490 aa2.57□□□□□ -2
SIR4YDR227W FRD1P32614 470 aaKnown RBP2.57□□□□□ -2
SIR4YDR227W NDE1P40215 560 aa2.57□□□□□ -2
SIR4YDR227W EMP47P43555 445 aa2.57□□□□□ -2
SIR4YDR227W BTN2P53286 410 aa2.57□□□□□ -2
SIR4YDR227W YDL129WQ07555 291 aa2.57□□□□□ -2
SIR4YDR227W FUR1P18562 216 aaKnown RBP2.57□□□□□ -2
SIR4YDR227W CLN2P20438 545 aa2.57□□□□□ -2
SIR4YDR227W RAM1P22007 431 aa2.57□□□□□ -2
SIR4YDR227W ATH1P48016 1211 aa2.57□□□□□ -2
SIR4YDR227W YNR061CP53747 219 aa2.57□□□□□ -2
SIR4YDR227W YRF1-3P0CX14 1859 aa2.57□□□□□ -2
SIR4YDR227W YRF1-7P0CX15 1859 aa2.57□□□□□ -2
SIR4YDR227W YRF1-6P53819 1859 aa2.57□□□□□ -2
SIR4YDR227W RPL40AP0CH08 128 aaKnown RBP2.57□□□□□ -2
SIR4YDR227W RPL40BP0CH09 128 aaKnown RBP2.57□□□□□ -2
SIR4YDR227W KTR1P27810 393 aaKnown RBP2.57□□□□□ -2
SIR4YDR227W PET112P33893 541 aa2.57□□□□□ -2
SIR4YDR227W DCW1P36091 449 aa2.57□□□□□ -2
SIR4YDR227W MTR4P47047 1073 aaKnown RBP2.57□□□□□ -2
SIR4YDR227W PUS6P53294 404 aa2.57□□□□□ -2
SIR4YDR227W YPR172WQ06608 200 aa2.57□□□□□ -2
SIR4YDR227W SSK22P25390 1331 aaPredicted RBP2.57□□□□□ -2
SIR4YDR227W IXR1P33417 597 aa2.56□□□□□ -2
SIR4YDR227W CHS7P38843 316 aa2.56□□□□□ -2
SIR4YDR227W PSF2P40359 213 aa2.56□□□□□ -2
SIR4YDR227W YMR1P47147 688 aaKnown RBP RIP-Chip data2.56□□□□□ -2not detected
SIR4YDR227W VTI1Q04338 217 aa2.56□□□□□ -2
Retrieved 100 of 5,963 RNA–protein pairs in 42 ms